Wall clock time and date at job start Mon Mar 30 2020 08:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.01598 * 2 1 4 4 C 1.50699 * 109.47261 * 58.61059 * 3 2 1 5 5 O 1.21281 * 119.99723 * 7.31289 * 4 3 2 6 6 N 1.34772 * 120.00181 * 187.31108 * 4 3 2 7 7 C 1.46503 * 120.00003 * 184.78418 * 6 4 3 8 8 C 1.52997 * 109.47208 * 184.98791 * 7 6 4 9 9 C 1.50703 * 115.55149 * 65.00375 * 8 7 6 10 10 H 1.07996 * 120.00270 * 269.03644 * 9 8 7 11 11 C 1.37880 * 119.99369 * 89.03672 * 9 8 7 12 12 N 1.31517 * 119.99787 * 180.37592 * 11 9 8 13 13 Si 1.86799 * 120.00308 * 0.37833 * 11 9 8 14 14 H 1.48495 * 109.47177 * 92.32274 * 13 11 9 15 15 H 1.48500 * 109.47099 * 212.31928 * 13 11 9 16 16 H 1.48498 * 109.46933 * 332.31906 * 13 11 9 17 17 C 1.53003 * 117.49841 * 279.34127 * 8 7 6 18 18 C 1.52995 * 117.49994 * 210.67835 * 8 7 6 19 19 C 1.54265 * 110.07067 * 121.42236 * 2 1 3 20 20 C 1.54884 * 104.19652 * 95.69817 * 19 2 1 21 21 C 1.54883 * 102.75322 * 37.93821 * 20 19 2 22 22 C 1.53876 * 110.02984 * 238.61251 * 2 1 3 23 23 H 1.08999 * 109.46828 * 60.70054 * 1 2 3 24 24 H 1.08994 * 109.47192 * 180.69756 * 1 2 3 25 25 H 1.09002 * 109.46645 * 300.69880 * 1 2 3 26 26 H 1.09003 * 109.46813 * 178.60846 * 3 2 1 27 27 H 1.09004 * 109.47152 * 298.61001 * 3 2 1 28 28 H 0.96998 * 119.99921 * 4.78402 * 6 4 3 29 29 H 1.08999 * 109.46964 * 304.98479 * 7 6 4 30 30 H 1.08995 * 109.47482 * 64.98710 * 7 6 4 31 31 H 0.97005 * 120.00035 * 180.02562 * 12 11 9 32 32 H 1.09006 * 117.49874 * 359.97438 * 17 8 7 33 33 H 1.08998 * 117.49835 * 145.01885 * 17 8 7 34 34 H 1.08997 * 117.50198 * 214.97642 * 18 8 7 35 35 H 1.08998 * 117.50201 * 359.97438 * 18 8 7 36 36 H 1.09005 * 110.48017 * 214.37568 * 19 2 1 37 37 H 1.08994 * 110.48995 * 337.01356 * 19 2 1 38 38 H 1.09003 * 110.75551 * 279.62022 * 20 19 2 39 39 H 1.09003 * 110.75913 * 156.25444 * 20 19 2 40 40 H 1.08995 * 110.49234 * 203.38122 * 21 20 19 41 41 H 1.08999 * 110.60083 * 80.78977 * 21 20 19 42 42 H 1.09004 * 110.03229 * 359.94673 * 22 2 1 43 43 H 1.08995 * 110.03520 * 121.33477 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 1.5304 2.1629 1.2129 5 8 0.9209 1.5547 2.0670 6 7 1.7396 3.4873 1.3484 7 6 1.3237 4.1729 2.5745 8 6 1.5598 5.6769 2.4230 9 6 0.7286 6.3625 1.3693 10 1 1.1032 6.4534 0.3605 11 6 -0.5103 6.8736 1.6934 12 7 -1.2389 7.4654 0.7722 13 14 -1.1538 6.7257 3.4408 14 1 -0.7817 7.9403 4.2098 15 1 -2.6324 6.5906 3.4140 16 1 -0.5590 5.5286 4.0876 17 6 2.9816 6.1951 2.6488 18 6 1.8919 6.4709 3.6880 19 6 2.0595 -0.7554 1.2365 20 6 2.3299 -2.1897 0.7183 21 6 2.8885 -1.9397 -0.7045 22 6 2.0571 -0.7529 -1.2341 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0275 0.0125 25 1 -0.3633 0.5247 0.8837 26 1 3.1434 1.4272 0.0250 27 1 1.7157 1.9474 -0.9022 28 1 2.1656 3.9866 0.6342 29 1 0.2645 3.9876 2.7529 30 1 1.9052 3.7969 3.4162 31 1 -2.1104 7.8253 1.0003 32 1 3.7487 5.4645 2.9057 33 1 3.3155 7.0321 2.0356 34 1 1.5096 7.4892 3.7580 35 1 1.9418 5.9218 4.6282 36 1 2.9820 -0.2994 1.5959 37 1 1.3076 -0.7702 2.0254 38 1 1.4053 -2.7654 0.6747 39 1 3.0700 -2.6924 1.3410 40 1 2.7415 -2.8186 -1.3320 41 1 3.9451 -1.6757 -0.6607 42 1 1.2228 -1.1192 -1.8325 43 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342300405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:32 Heat of formation + Delta-G solvation = -38.402569 kcal Electronic energy + Delta-G solvation = -20794.880648 eV Core-core repulsion = 17839.656281 eV Total energy + Delta-G solvation = -2955.224367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94776 -38.08431 -36.89264 -33.39405 -32.14276 -32.07533 -28.66604 -28.33431 -26.32696 -25.23506 -24.20892 -21.78688 -20.70473 -19.93434 -19.29170 -18.47027 -16.75867 -16.22208 -15.58696 -15.25096 -14.98486 -14.85995 -14.36170 -13.80485 -13.63747 -13.30087 -13.11221 -12.78404 -12.68629 -12.37684 -12.07036 -11.68833 -11.41937 -11.17592 -11.16063 -10.95399 -10.85399 -10.72816 -10.51519 -10.44657 -10.41209 -10.30490 -10.18044 -9.66149 -9.20636 -9.14998 -8.65312 -8.56367 -8.23581 -6.16532 -4.21066 3.18641 3.27666 3.38570 3.43936 3.79133 4.39395 4.59612 4.62737 4.75469 4.89946 5.12172 5.22981 5.29840 5.35808 5.46997 5.57252 5.62335 5.67977 5.70710 5.77465 5.82762 5.88565 5.91690 6.00931 6.01402 6.05326 6.16342 6.23343 6.27555 6.33572 6.39830 6.43985 6.53130 6.54255 6.67691 6.72519 6.98993 7.07522 7.19613 7.67017 8.22117 8.40056 8.83311 8.84578 9.46636 10.94847 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.004654 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.496620 B = 6014.749383 C = 6234.576126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.131 4.131 4 C 0.506 3.494 5 O -0.550 6.550 6 N -0.706 5.706 7 C 0.158 3.842 8 C -0.015 4.015 9 C -0.489 4.489 10 H 0.078 0.922 11 C 0.080 3.920 12 N -0.896 5.896 13 Si 0.880 3.120 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.257 1.257 17 C -0.180 4.180 18 C -0.194 4.194 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.118 4.118 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.402 0.598 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 -14.499 -1.831 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 C -0.171 4.171 4 C 0.293 3.707 5 O -0.429 6.429 6 N -0.355 5.355 7 C 0.034 3.966 8 C -0.016 4.016 9 C -0.527 4.527 10 H 0.096 0.904 11 C -0.123 4.123 12 N -0.532 5.532 13 Si 0.708 3.292 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.181 1.181 17 C -0.217 4.217 18 C -0.232 4.232 19 C -0.141 4.141 20 C -0.166 4.166 21 C -0.161 4.161 22 C -0.156 4.156 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.236 0.764 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.590 -14.815 -1.252 16.693 hybrid contribution -0.259 0.473 0.511 0.743 sum 7.331 -14.342 -0.741 16.125 Atomic orbital electron populations 1.22081 0.93971 1.01406 1.03065 1.20875 0.96188 0.92598 0.94902 1.21864 1.01706 0.96076 0.97485 1.20557 0.79867 0.82363 0.87963 1.90591 1.41356 1.66942 1.44022 1.45898 1.61047 1.07844 1.20675 1.21079 0.99404 0.91608 0.84522 1.19644 0.95167 0.90489 0.96309 1.20173 1.00751 1.36222 0.95520 0.90430 1.24972 0.96261 0.93916 0.97186 1.69887 1.11945 1.37851 1.33546 0.86834 0.77506 0.79469 0.85378 1.20531 1.22114 1.18112 1.22864 0.92204 1.03157 1.03471 1.22936 1.05346 1.01644 0.93225 1.22403 1.00961 0.93493 0.97234 1.22546 1.00348 0.97701 0.95993 1.22338 0.99343 0.97830 0.96597 1.22310 0.99407 0.96790 0.97053 0.93444 0.93293 0.90015 0.89281 0.89317 0.76376 0.91709 0.94207 0.92493 0.90936 0.89418 0.89225 0.90739 0.92312 0.90382 0.91818 0.92106 0.92186 0.91920 0.91678 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 7.83 37.16 0.29 -1.76 16 2 C -0.05 -0.56 0.63 -153.39 -0.10 -0.66 16 3 C -0.13 -1.71 4.41 -27.89 -0.12 -1.83 16 4 C 0.51 8.72 7.23 -10.99 -0.08 8.64 16 5 O -0.55 -10.96 12.23 5.56 0.07 -10.89 16 6 N -0.71 -12.85 5.45 -60.30 -0.33 -13.18 16 7 C 0.16 3.29 5.19 -4.04 -0.02 3.27 16 8 C -0.01 -0.33 0.81 -155.66 -0.13 -0.45 16 9 C -0.49 -12.84 9.32 -34.44 -0.32 -13.17 16 10 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 12 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 13 Si 0.88 21.54 24.76 -169.99 -4.21 17.33 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.26 -6.05 5.88 56.52 0.33 -5.72 16 17 C -0.18 -3.41 9.96 -26.69 -0.27 -3.68 16 18 C -0.19 -3.97 7.37 -26.69 -0.20 -4.17 16 19 C -0.10 -1.32 4.62 -25.08 -0.12 -1.44 16 20 C -0.13 -1.33 6.91 -24.74 -0.17 -1.50 16 21 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 22 C -0.12 -1.21 6.11 -25.61 -0.16 -1.36 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.37 5.70 -51.93 -0.30 1.08 16 26 H 0.09 1.00 8.12 -51.93 -0.42 0.57 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.40 6.77 8.45 -40.82 -0.35 6.43 16 29 H 0.06 1.52 7.11 -51.93 -0.37 1.15 16 30 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.09 1.93 6.94 -51.93 -0.36 1.57 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 37 H 0.08 1.16 7.06 -51.93 -0.37 0.79 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 43 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -29.45 331.62 -7.99 -37.44 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.64 Total: 7.39 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -1.65 Total: -17.31 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.44 Total: -38.96 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.21 Total: 17.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.45 -7.99 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342300405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.963 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds