Wall clock time and date at job start Mon Mar 30 2020 08:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.01598 * 2 1 4 4 C 1.50699 * 109.47261 * 58.61059 * 3 2 1 5 5 O 1.21281 * 119.99723 * 7.31289 * 4 3 2 6 6 N 1.34772 * 120.00181 * 187.31108 * 4 3 2 7 7 C 1.46503 * 120.00003 * 184.78418 * 6 4 3 8 8 C 1.52997 * 109.47208 * 184.98791 * 7 6 4 9 9 C 1.50703 * 115.55149 * 65.00375 * 8 7 6 10 10 H 1.07996 * 120.00270 * 269.03644 * 9 8 7 11 11 C 1.37880 * 119.99369 * 89.03672 * 9 8 7 12 12 N 1.31517 * 119.99787 * 180.37592 * 11 9 8 13 13 Si 1.86799 * 120.00308 * 0.37833 * 11 9 8 14 14 H 1.48495 * 109.47177 * 92.32274 * 13 11 9 15 15 H 1.48500 * 109.47099 * 212.31928 * 13 11 9 16 16 H 1.48498 * 109.46933 * 332.31906 * 13 11 9 17 17 C 1.53003 * 117.49841 * 279.34127 * 8 7 6 18 18 C 1.52995 * 117.49994 * 210.67835 * 8 7 6 19 19 C 1.54265 * 110.07067 * 121.42236 * 2 1 3 20 20 C 1.54884 * 104.19652 * 95.69817 * 19 2 1 21 21 C 1.54883 * 102.75322 * 37.93821 * 20 19 2 22 22 C 1.53876 * 110.02984 * 238.61251 * 2 1 3 23 23 H 1.08999 * 109.46828 * 60.70054 * 1 2 3 24 24 H 1.08994 * 109.47192 * 180.69756 * 1 2 3 25 25 H 1.09002 * 109.46645 * 300.69880 * 1 2 3 26 26 H 1.09003 * 109.46813 * 178.60846 * 3 2 1 27 27 H 1.09004 * 109.47152 * 298.61001 * 3 2 1 28 28 H 0.96998 * 119.99921 * 4.78402 * 6 4 3 29 29 H 1.08999 * 109.46964 * 304.98479 * 7 6 4 30 30 H 1.08995 * 109.47482 * 64.98710 * 7 6 4 31 31 H 0.97005 * 120.00035 * 180.02562 * 12 11 9 32 32 H 1.09006 * 117.49874 * 359.97438 * 17 8 7 33 33 H 1.08998 * 117.49835 * 145.01885 * 17 8 7 34 34 H 1.08997 * 117.50198 * 214.97642 * 18 8 7 35 35 H 1.08998 * 117.50201 * 359.97438 * 18 8 7 36 36 H 1.09005 * 110.48017 * 214.37568 * 19 2 1 37 37 H 1.08994 * 110.48995 * 337.01356 * 19 2 1 38 38 H 1.09003 * 110.75551 * 279.62022 * 20 19 2 39 39 H 1.09003 * 110.75913 * 156.25444 * 20 19 2 40 40 H 1.08995 * 110.49234 * 203.38122 * 21 20 19 41 41 H 1.08999 * 110.60083 * 80.78977 * 21 20 19 42 42 H 1.09004 * 110.03229 * 359.94673 * 22 2 1 43 43 H 1.08995 * 110.03520 * 121.33477 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 1.5304 2.1629 1.2129 5 8 0.9209 1.5547 2.0670 6 7 1.7396 3.4873 1.3484 7 6 1.3237 4.1729 2.5745 8 6 1.5598 5.6769 2.4230 9 6 0.7286 6.3625 1.3693 10 1 1.1032 6.4534 0.3605 11 6 -0.5103 6.8736 1.6934 12 7 -1.2389 7.4654 0.7722 13 14 -1.1538 6.7257 3.4408 14 1 -0.7817 7.9403 4.2098 15 1 -2.6324 6.5906 3.4140 16 1 -0.5590 5.5286 4.0876 17 6 2.9816 6.1951 2.6488 18 6 1.8919 6.4709 3.6880 19 6 2.0595 -0.7554 1.2365 20 6 2.3299 -2.1897 0.7183 21 6 2.8885 -1.9397 -0.7045 22 6 2.0571 -0.7529 -1.2341 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0275 0.0125 25 1 -0.3633 0.5247 0.8837 26 1 3.1434 1.4272 0.0250 27 1 1.7157 1.9474 -0.9022 28 1 2.1656 3.9866 0.6342 29 1 0.2645 3.9876 2.7529 30 1 1.9052 3.7969 3.4162 31 1 -2.1104 7.8253 1.0003 32 1 3.7487 5.4645 2.9057 33 1 3.3155 7.0321 2.0356 34 1 1.5096 7.4892 3.7580 35 1 1.9418 5.9218 4.6282 36 1 2.9820 -0.2994 1.5959 37 1 1.3076 -0.7702 2.0254 38 1 1.4053 -2.7654 0.6747 39 1 3.0700 -2.6924 1.3410 40 1 2.7415 -2.8186 -1.3320 41 1 3.9451 -1.6757 -0.6607 42 1 1.2228 -1.1192 -1.8325 43 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342300405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:31 Heat of formation + Delta-G solvation = -56.133249 kcal Electronic energy + Delta-G solvation = -20795.649508 eV Core-core repulsion = 17839.656281 eV Total energy + Delta-G solvation = -2955.993227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17915 -39.37495 -38.39622 -34.92045 -34.21233 -33.06552 -29.60905 -29.51882 -28.04201 -26.86405 -25.33196 -23.38536 -21.54706 -21.31966 -20.99818 -19.58147 -18.46031 -17.71353 -16.98455 -16.74832 -16.36766 -16.09183 -15.60986 -15.24740 -14.83788 -14.74625 -14.56162 -14.20880 -14.11591 -13.80218 -13.49135 -13.10723 -12.89304 -12.64799 -12.43089 -12.19433 -12.02650 -11.98615 -11.85988 -11.60310 -11.57822 -11.43301 -11.31128 -11.23622 -10.99517 -10.70455 -10.60276 -10.24472 -9.77904 -8.31272 -6.37005 1.31120 1.37893 1.48214 1.83003 2.34754 2.40767 3.04673 3.25495 3.67385 3.72654 3.85377 4.03378 4.15954 4.36140 4.38941 4.40805 4.42473 4.53529 4.54871 4.59825 4.68150 4.75491 4.84878 4.85985 4.88330 4.90060 5.02550 5.09228 5.09567 5.19874 5.23913 5.30827 5.31988 5.43537 5.48699 5.50557 5.55755 5.61792 5.69141 5.74079 6.27341 6.70725 6.82479 7.33355 7.46644 8.83490 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.004654 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.496620 B = 6014.749383 C = 6234.576126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C -0.125 4.125 4 C 0.501 3.499 5 O -0.579 6.579 6 N -0.708 5.708 7 C 0.168 3.832 8 C -0.040 4.040 9 C -0.476 4.476 10 H 0.046 0.954 11 C 0.025 3.975 12 N -0.945 5.945 13 Si 0.930 3.070 14 H -0.267 1.267 15 H -0.305 1.305 16 H -0.242 1.242 17 C -0.150 4.150 18 C -0.195 4.195 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.114 4.114 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.409 0.591 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 -15.991 -1.667 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.164 4.164 4 C 0.289 3.711 5 O -0.460 6.460 6 N -0.358 5.358 7 C 0.043 3.957 8 C -0.041 4.041 9 C -0.514 4.514 10 H 0.064 0.936 11 C -0.173 4.173 12 N -0.585 5.585 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.232 1.232 16 H -0.166 1.166 17 C -0.187 4.187 18 C -0.233 4.233 19 C -0.141 4.141 20 C -0.163 4.163 21 C -0.156 4.156 22 C -0.151 4.151 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.134 0.866 27 H 0.119 0.881 28 H 0.244 0.756 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.890 -16.315 -1.089 19.110 hybrid contribution -0.942 0.922 0.420 1.383 sum 8.949 -15.393 -0.669 17.818 Atomic orbital electron populations 1.22028 0.95402 1.01489 1.01368 1.20929 0.95044 0.92612 0.96180 1.21932 1.03169 0.95803 0.95517 1.21347 0.79033 0.81888 0.88813 1.90594 1.42511 1.67428 1.45473 1.45923 1.61283 1.08351 1.20225 1.20775 0.97662 0.91027 0.86228 1.19480 0.97269 0.90820 0.96543 1.20367 1.00737 1.34892 0.95403 0.93621 1.25705 0.96900 0.94213 1.00456 1.70016 1.12583 1.40313 1.35566 0.86023 0.76282 0.80346 0.81741 1.19231 1.23248 1.16572 1.22893 0.91197 1.03026 1.01596 1.23006 1.05656 1.00870 0.93772 1.22339 0.99765 0.95410 0.96617 1.22530 1.00761 0.96007 0.96969 1.22333 0.99577 0.97989 0.95690 1.22277 0.99898 0.97083 0.95848 0.93159 0.92336 0.93564 0.86594 0.88087 0.75613 0.95127 0.92749 0.92727 0.87709 0.89576 0.90474 0.88413 0.92662 0.93387 0.91901 0.91155 0.90704 0.90959 0.91282 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 7.83 71.98 0.56 -3.42 16 2 C -0.05 -1.10 0.63 -51.46 -0.03 -1.14 16 3 C -0.12 -3.00 4.41 29.85 0.13 -2.87 16 4 C 0.50 16.93 7.23 87.66 0.63 17.56 16 5 O -0.58 -23.34 12.23 -3.03 -0.04 -23.37 16 6 N -0.71 -25.15 5.45 -463.07 -2.53 -27.68 16 7 C 0.17 6.83 5.19 86.38 0.45 7.28 16 8 C -0.04 -1.70 0.81 -52.93 -0.04 -1.74 16 9 C -0.48 -25.28 9.32 25.60 0.24 -25.04 16 10 H 0.05 2.65 8.06 -2.91 -0.02 2.63 16 11 C 0.03 1.42 5.47 84.65 0.46 1.88 16 12 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 13 Si 0.93 44.72 24.76 68.60 1.70 46.42 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 16 H -0.24 -10.98 5.88 99.48 0.59 -10.39 16 17 C -0.15 -5.24 9.96 30.62 0.30 -4.94 16 18 C -0.20 -7.50 7.37 30.62 0.23 -7.27 16 19 C -0.10 -2.54 4.62 31.67 0.15 -2.39 16 20 C -0.13 -2.32 6.91 31.88 0.22 -2.10 16 21 C -0.12 -1.81 6.83 31.67 0.22 -1.59 16 22 C -0.11 -1.97 6.11 31.32 0.19 -1.78 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.60 5.70 -2.39 -0.01 1.59 16 26 H 0.12 2.21 8.12 -2.39 -0.02 2.19 16 27 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.41 13.31 8.45 -92.71 -0.78 12.52 16 29 H 0.03 1.44 7.11 -2.39 -0.02 1.42 16 30 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 31 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 32 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 33 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.08 3.17 6.94 -2.39 -0.02 3.15 16 35 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.05 1.37 7.84 -2.38 -0.02 1.35 16 37 H 0.05 1.45 7.06 -2.39 -0.02 1.43 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.16 7.67 -2.38 -0.02 1.14 16 43 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 Total: -1.00 -65.54 331.62 3.21 -62.33 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.07 Total: 27.41 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.71 Total: -27.57 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -2.23 Total: -85.21 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.70 Total: 46.42 kcal Total: -65.54 3.21 -62.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342300405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.197 kcal (2) G-P(sol) polarization free energy of solvation -65.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds