Wall clock time and date at job start Mon Mar 30 2020 08:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.84896 * 2 1 4 4 C 1.53787 * 113.61394 * 131.18939 * 2 1 3 5 5 C 1.53783 * 87.08060 * 89.11881 * 4 2 1 6 6 C 1.52999 * 113.61382 * 139.98122 * 5 4 2 7 7 C 1.50691 * 109.47225 * 176.53112 * 6 5 4 8 8 O 1.21284 * 120.00077 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00185 * 180.02562 * 7 6 5 10 10 C 1.46509 * 120.00021 * 179.72492 * 9 7 6 11 11 C 1.53007 * 109.46858 * 178.41379 * 10 9 7 12 12 C 1.50700 * 115.54926 * 65.14391 * 11 10 9 13 13 H 1.08001 * 119.99445 * 265.39406 * 12 11 10 14 14 C 1.37880 * 120.00115 * 85.38924 * 12 11 10 15 15 N 1.31511 * 119.99731 * 353.54301 * 14 12 11 16 16 Si 1.86801 * 119.99813 * 173.53939 * 14 12 11 17 17 H 1.48500 * 109.46850 * 90.00176 * 16 14 12 18 18 H 1.48500 * 109.46615 * 210.00136 * 16 14 12 19 19 H 1.48495 * 109.47186 * 330.00155 * 16 14 12 20 20 C 1.52991 * 117.49729 * 279.47058 * 11 10 9 21 21 C 1.52994 * 117.49513 * 210.81010 * 11 10 9 22 22 C 1.53789 * 87.16991 * 25.39121 * 5 4 2 23 23 H 1.08996 * 109.47409 * 288.80751 * 1 2 3 24 24 H 1.09003 * 109.46674 * 48.81206 * 1 2 3 25 25 H 1.09003 * 109.46697 * 168.80717 * 1 2 3 26 26 H 1.09000 * 109.47398 * 191.19163 * 3 2 1 27 27 H 1.09001 * 109.47063 * 311.19091 * 3 2 1 28 28 H 1.09001 * 109.47876 * 71.18952 * 3 2 1 29 29 H 1.09002 * 113.61170 * 334.57372 * 4 2 1 30 30 H 1.09000 * 113.61210 * 203.67021 * 4 2 1 31 31 H 1.08999 * 113.61541 * 270.80279 * 5 4 2 32 32 H 1.08997 * 109.47235 * 56.52853 * 6 5 4 33 33 H 1.09006 * 109.46948 * 296.53028 * 6 5 4 34 34 H 0.97004 * 119.99907 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.46806 * 298.41430 * 10 9 7 36 36 H 1.08995 * 109.46880 * 58.41817 * 10 9 7 37 37 H 0.97000 * 119.99451 * 185.06941 * 15 14 12 38 38 H 1.09002 * 117.50120 * 0.02562 * 20 11 10 39 39 H 1.09003 * 117.49755 * 145.02841 * 20 11 10 40 40 H 1.08999 * 117.49765 * 214.97957 * 21 11 10 41 41 H 1.09001 * 117.50228 * 359.97438 * 21 11 10 42 42 H 1.08997 * 113.61321 * 89.16121 * 22 5 4 43 43 H 1.09001 * 113.61219 * 220.05818 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9280 1.0604 5 6 2.0931 -2.0426 0.0022 6 6 3.3265 -2.9478 0.0032 7 6 3.1401 -4.0520 -1.0051 8 8 2.1208 -4.1096 -1.6598 9 7 4.1056 -4.9761 -1.1787 10 6 3.9217 -6.0531 -2.1548 11 6 5.1718 -6.9350 -2.1826 12 6 5.4590 -7.6956 -0.9138 13 1 6.1340 -7.2836 -0.1783 14 6 4.8599 -8.9175 -0.6918 15 7 3.9429 -9.3610 -1.5237 16 14 5.3509 -9.9429 0.7904 17 1 4.4870 -9.5888 1.9453 18 1 5.1856 -11.3839 0.4720 19 1 6.7701 -9.6710 1.1322 20 6 6.3693 -6.4375 -2.9945 21 6 5.5303 -7.6105 -3.5077 22 6 2.1450 -0.9317 -1.0601 23 1 -0.3634 0.3313 0.9727 24 1 -0.3633 0.6768 -0.7734 25 1 -0.3633 -1.0082 -0.1995 26 1 3.1942 1.3533 -0.1995 27 1 1.6415 2.0075 -0.7733 28 1 1.9599 1.8735 0.9727 29 1 1.4945 -1.1067 1.9157 30 1 3.1591 -0.6484 1.3498 31 1 1.1575 -2.6019 0.0037 32 1 3.4592 -3.3800 0.9950 33 1 4.2075 -2.3616 -0.2585 34 1 4.9207 -4.9302 -0.6549 35 1 3.0582 -6.6556 -1.8727 36 1 3.7580 -5.6237 -3.1431 37 1 3.4691 -10.1847 -1.3289 38 1 6.2668 -5.4818 -3.5085 39 1 7.3649 -6.6608 -2.6112 40 1 5.9744 -8.6049 -3.4618 41 1 4.8755 -7.4270 -4.3596 42 1 3.1577 -0.6533 -1.3515 43 1 1.4925 -1.1135 -1.9141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352648631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:05 Heat of formation + Delta-G solvation = -19.906013 kcal Electronic energy + Delta-G solvation = -20200.670983 eV Core-core repulsion = 17246.248687 eV Total energy + Delta-G solvation = -2954.422296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04434 -38.54769 -36.62992 -33.19430 -32.16551 -31.96626 -28.34500 -27.51710 -25.97587 -25.68063 -24.94036 -21.31487 -20.94787 -19.58773 -19.12921 -18.28789 -16.67851 -15.97781 -15.46872 -15.01747 -14.69251 -14.61623 -14.20518 -14.15029 -13.66899 -13.44837 -12.86829 -12.77684 -12.55189 -12.30261 -11.97860 -11.86162 -11.63245 -11.49308 -11.38751 -11.00880 -10.93481 -10.71878 -10.53389 -10.52318 -10.27498 -10.02988 -9.94848 -9.65031 -9.17684 -8.96266 -8.50297 -8.25382 -8.03965 -6.08512 -4.17267 3.24839 3.31210 3.32867 3.34653 3.94431 4.34589 4.44112 4.61083 4.66849 4.86248 5.12324 5.19438 5.28570 5.36336 5.45561 5.50503 5.51802 5.66122 5.72532 5.75378 5.84215 5.85437 5.89963 5.93375 5.95383 6.05242 6.17958 6.20858 6.34049 6.46498 6.47928 6.58437 6.63016 6.69113 6.91295 7.09235 7.33198 7.44432 7.49272 7.80546 8.33427 8.37755 8.83312 8.97544 9.49534 10.99322 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.003932 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.964444 B = 7118.661665 C = 7537.629395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.129 4.129 5 C -0.089 4.089 6 C -0.132 4.132 7 C 0.502 3.498 8 O -0.558 6.558 9 N -0.706 5.706 10 C 0.163 3.837 11 C 0.028 3.972 12 C -0.501 4.501 13 H 0.060 0.940 14 C 0.074 3.926 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.211 4.211 21 C -0.149 4.149 22 C -0.123 4.123 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 16.476 3.890 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.191 4.191 4 C -0.167 4.167 5 C -0.108 4.108 6 C -0.172 4.172 7 C 0.288 3.712 8 O -0.437 6.437 9 N -0.355 5.355 10 C 0.040 3.960 11 C 0.028 3.972 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.510 5.510 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.248 4.248 21 C -0.187 4.187 22 C -0.160 4.160 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.546 16.210 3.330 16.744 hybrid contribution 0.647 -0.774 1.006 1.424 sum -1.899 15.436 4.336 16.145 Atomic orbital electron populations 1.21595 0.93387 1.02205 1.01377 1.21805 0.95501 0.94208 0.97702 1.21720 1.00425 0.95667 1.01306 1.23138 1.00903 0.96066 0.96567 1.22234 0.98468 0.93768 0.96334 1.21672 0.99661 0.96351 0.99538 1.20564 0.83566 0.83051 0.84001 1.90637 1.28434 1.75959 1.48692 1.46022 1.20144 1.27614 1.41708 1.20960 0.99785 0.86322 0.88923 1.19035 0.89661 0.96139 0.92415 1.20339 1.28300 1.02543 1.02679 0.92215 1.24989 0.94828 0.97142 0.96080 1.69978 1.23070 1.22342 1.35619 0.86631 0.79065 0.79725 0.82845 1.20655 1.21153 1.19808 1.23017 0.97198 0.97150 1.07440 1.22488 1.02425 0.95902 0.97869 1.23120 1.00767 0.95250 0.96858 0.92678 0.92628 0.92078 0.92647 0.92864 0.92848 0.91621 0.90152 0.88377 0.89144 0.89471 0.76727 0.91119 0.94658 0.92846 0.91687 0.90382 0.89847 0.91703 0.90493 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.07 37.16 0.34 -0.90 16 2 C -0.09 -0.92 1.39 -153.60 -0.21 -1.14 16 3 C -0.13 -1.15 9.20 37.16 0.34 -0.81 16 4 C -0.13 -1.31 6.79 -25.91 -0.18 -1.49 16 5 C -0.09 -1.14 2.76 -89.80 -0.25 -1.39 16 6 C -0.13 -1.77 5.52 -27.89 -0.15 -1.92 16 7 C 0.50 9.28 7.83 -10.99 -0.09 9.19 16 8 O -0.56 -12.32 15.79 5.55 0.09 -12.24 16 9 N -0.71 -13.71 5.48 -60.29 -0.33 -14.04 16 10 C 0.16 3.75 5.50 -4.03 -0.02 3.72 16 11 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 12 C -0.50 -12.87 8.63 -34.44 -0.30 -13.17 16 13 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 14 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 15 N -0.87 -24.34 12.91 55.43 0.72 -23.62 16 16 Si 0.89 20.50 29.55 -169.99 -5.02 15.48 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.21 -4.39 9.96 -26.70 -0.27 -4.65 16 21 C -0.15 -3.42 9.42 -26.70 -0.25 -3.67 16 22 C -0.12 -1.47 6.76 -25.83 -0.17 -1.65 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.65 7.34 -51.93 -0.38 0.27 16 26 H 0.05 0.46 7.96 -51.93 -0.41 0.05 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.10 1.45 7.25 -51.93 -0.38 1.07 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 34 H 0.40 7.03 8.36 -40.82 -0.34 6.69 16 35 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.08 0.88 7.75 -51.93 -0.40 0.47 16 43 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -29.02 351.08 -8.56 -37.57 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.78 Total: 7.11 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.52 Total: -15.56 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.39 Total: -37.66 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.02 -8.56 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352648631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.668 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds