Wall clock time and date at job start Mon Mar 30 2020 08:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.84896 * 2 1 4 4 C 1.53787 * 113.61394 * 131.18939 * 2 1 3 5 5 C 1.53783 * 87.08060 * 89.11881 * 4 2 1 6 6 C 1.52999 * 113.61382 * 139.98122 * 5 4 2 7 7 C 1.50691 * 109.47225 * 176.53112 * 6 5 4 8 8 O 1.21284 * 120.00077 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00185 * 180.02562 * 7 6 5 10 10 C 1.46509 * 120.00021 * 179.72492 * 9 7 6 11 11 C 1.53007 * 109.46858 * 178.41379 * 10 9 7 12 12 C 1.50700 * 115.54926 * 65.14391 * 11 10 9 13 13 H 1.08001 * 119.99445 * 265.39406 * 12 11 10 14 14 C 1.37880 * 120.00115 * 85.38924 * 12 11 10 15 15 N 1.31511 * 119.99731 * 353.54301 * 14 12 11 16 16 Si 1.86801 * 119.99813 * 173.53939 * 14 12 11 17 17 H 1.48500 * 109.46850 * 90.00176 * 16 14 12 18 18 H 1.48500 * 109.46615 * 210.00136 * 16 14 12 19 19 H 1.48495 * 109.47186 * 330.00155 * 16 14 12 20 20 C 1.52991 * 117.49729 * 279.47058 * 11 10 9 21 21 C 1.52994 * 117.49513 * 210.81010 * 11 10 9 22 22 C 1.53789 * 87.16991 * 25.39121 * 5 4 2 23 23 H 1.08996 * 109.47409 * 288.80751 * 1 2 3 24 24 H 1.09003 * 109.46674 * 48.81206 * 1 2 3 25 25 H 1.09003 * 109.46697 * 168.80717 * 1 2 3 26 26 H 1.09000 * 109.47398 * 191.19163 * 3 2 1 27 27 H 1.09001 * 109.47063 * 311.19091 * 3 2 1 28 28 H 1.09001 * 109.47876 * 71.18952 * 3 2 1 29 29 H 1.09002 * 113.61170 * 334.57372 * 4 2 1 30 30 H 1.09000 * 113.61210 * 203.67021 * 4 2 1 31 31 H 1.08999 * 113.61541 * 270.80279 * 5 4 2 32 32 H 1.08997 * 109.47235 * 56.52853 * 6 5 4 33 33 H 1.09006 * 109.46948 * 296.53028 * 6 5 4 34 34 H 0.97004 * 119.99907 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.46806 * 298.41430 * 10 9 7 36 36 H 1.08995 * 109.46880 * 58.41817 * 10 9 7 37 37 H 0.97000 * 119.99451 * 185.06941 * 15 14 12 38 38 H 1.09002 * 117.50120 * 0.02562 * 20 11 10 39 39 H 1.09003 * 117.49755 * 145.02841 * 20 11 10 40 40 H 1.08999 * 117.49765 * 214.97957 * 21 11 10 41 41 H 1.09001 * 117.50228 * 359.97438 * 21 11 10 42 42 H 1.08997 * 113.61321 * 89.16121 * 22 5 4 43 43 H 1.09001 * 113.61219 * 220.05818 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9280 1.0604 5 6 2.0931 -2.0426 0.0022 6 6 3.3265 -2.9478 0.0032 7 6 3.1401 -4.0520 -1.0051 8 8 2.1208 -4.1096 -1.6598 9 7 4.1056 -4.9761 -1.1787 10 6 3.9217 -6.0531 -2.1548 11 6 5.1718 -6.9350 -2.1826 12 6 5.4590 -7.6956 -0.9138 13 1 6.1340 -7.2836 -0.1783 14 6 4.8599 -8.9175 -0.6918 15 7 3.9429 -9.3610 -1.5237 16 14 5.3509 -9.9429 0.7904 17 1 4.4870 -9.5888 1.9453 18 1 5.1856 -11.3839 0.4720 19 1 6.7701 -9.6710 1.1322 20 6 6.3693 -6.4375 -2.9945 21 6 5.5303 -7.6105 -3.5077 22 6 2.1450 -0.9317 -1.0601 23 1 -0.3634 0.3313 0.9727 24 1 -0.3633 0.6768 -0.7734 25 1 -0.3633 -1.0082 -0.1995 26 1 3.1942 1.3533 -0.1995 27 1 1.6415 2.0075 -0.7733 28 1 1.9599 1.8735 0.9727 29 1 1.4945 -1.1067 1.9157 30 1 3.1591 -0.6484 1.3498 31 1 1.1575 -2.6019 0.0037 32 1 3.4592 -3.3800 0.9950 33 1 4.2075 -2.3616 -0.2585 34 1 4.9207 -4.9302 -0.6549 35 1 3.0582 -6.6556 -1.8727 36 1 3.7580 -5.6237 -3.1431 37 1 3.4691 -10.1847 -1.3289 38 1 6.2668 -5.4818 -3.5085 39 1 7.3649 -6.6608 -2.6112 40 1 5.9744 -8.6049 -3.4618 41 1 4.8755 -7.4270 -4.3596 42 1 3.1577 -0.6533 -1.3515 43 1 1.4925 -1.1135 -1.9141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352648631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:04 Heat of formation + Delta-G solvation = -35.648015 kcal Electronic energy + Delta-G solvation = -20201.353608 eV Core-core repulsion = 17246.248687 eV Total energy + Delta-G solvation = -2955.104921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14361 -39.92505 -38.40406 -34.87584 -33.97443 -33.13695 -29.51048 -28.24527 -27.78399 -26.69498 -26.54419 -23.00946 -22.17690 -21.31489 -20.65699 -19.14841 -18.33164 -17.62935 -16.76236 -16.71018 -16.36314 -15.83275 -15.58226 -15.13991 -14.93215 -14.78155 -14.29807 -14.05356 -13.65119 -13.55457 -13.49078 -13.04271 -12.91572 -12.83746 -12.74120 -12.63781 -12.34256 -12.22962 -12.05352 -11.64289 -11.50110 -11.40699 -10.95492 -10.85550 -10.83191 -10.70444 -10.45570 -10.02742 -9.78662 -8.10065 -6.23539 1.42245 1.44975 1.53477 1.83116 2.41061 2.48580 3.18296 3.48402 3.62398 3.71738 3.79570 3.89361 4.14993 4.25165 4.36623 4.47293 4.54489 4.62929 4.65177 4.71307 4.76223 4.82085 4.84266 4.91949 4.95839 4.98602 5.04171 5.06793 5.08154 5.09498 5.22660 5.26164 5.33460 5.38311 5.58617 5.60500 5.63871 5.70344 5.73533 5.78586 6.36432 6.82047 6.87440 7.45838 7.48356 8.97578 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.003932 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.964444 B = 7118.661665 C = 7537.629395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.099 4.099 6 C -0.120 4.120 7 C 0.497 3.503 8 O -0.600 6.600 9 N -0.703 5.703 10 C 0.179 3.821 11 C 0.006 3.994 12 C -0.505 4.505 13 H 0.066 0.934 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.951 3.049 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.262 1.262 20 C -0.175 4.175 21 C -0.162 4.162 22 C -0.128 4.128 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.410 0.590 35 H 0.025 0.975 36 H 0.031 0.969 37 H 0.258 0.742 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 18.576 5.547 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.188 4.188 4 C -0.153 4.153 5 C -0.118 4.118 6 C -0.160 4.160 7 C 0.286 3.714 8 O -0.482 6.482 9 N -0.352 5.352 10 C 0.055 3.945 11 C 0.006 3.994 12 C -0.542 4.542 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.777 3.223 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.186 1.186 20 C -0.212 4.212 21 C -0.200 4.200 22 C -0.165 4.165 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.246 0.754 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.799 18.333 5.011 19.022 hybrid contribution 0.079 -1.416 0.436 1.484 sum -0.721 16.917 5.447 17.786 Atomic orbital electron populations 1.21612 0.93533 1.01264 1.02325 1.21792 0.95470 0.95011 0.96481 1.21700 1.00631 0.94383 1.02104 1.23104 1.02152 0.94082 0.95916 1.22221 0.96931 0.94182 0.98446 1.21724 1.01105 0.94674 0.98473 1.21552 0.82345 0.83452 0.84084 1.90623 1.30083 1.76998 1.50486 1.45942 1.21036 1.26936 1.41326 1.20503 0.97884 0.86676 0.89474 1.19059 0.91189 0.97094 0.92096 1.20676 1.27591 1.02567 1.03401 0.91623 1.25734 0.94886 0.98459 0.98657 1.70115 1.24438 1.22685 1.37472 0.85661 0.79127 0.77773 0.79727 1.20497 1.21676 1.18623 1.23002 0.96318 0.96962 1.04906 1.22431 1.03643 0.95961 0.98006 1.23174 1.01045 0.95939 0.96341 0.91311 0.92158 0.93946 0.92056 0.92694 0.91661 0.91053 0.88194 0.91296 0.87232 0.86435 0.75405 0.95701 0.95096 0.93270 0.89359 0.89418 0.91812 0.91356 0.89449 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.07 71.98 0.65 -1.73 16 2 C -0.09 -1.58 1.39 -51.59 -0.07 -1.66 16 3 C -0.13 -1.86 9.20 71.98 0.66 -1.20 16 4 C -0.12 -2.02 6.79 31.12 0.21 -1.81 16 5 C -0.10 -2.41 2.76 -10.26 -0.03 -2.44 16 6 C -0.12 -2.96 5.52 29.84 0.16 -2.79 16 7 C 0.50 18.21 7.83 87.65 0.69 18.90 16 8 O -0.60 -27.31 15.79 -3.04 -0.05 -27.35 16 9 N -0.70 -26.88 5.48 -463.05 -2.54 -29.41 16 10 C 0.18 8.37 5.50 86.38 0.48 8.84 16 11 C 0.01 0.30 1.38 -52.93 -0.07 0.22 16 12 C -0.50 -25.67 8.63 25.60 0.22 -25.45 16 13 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 14 C 0.02 1.23 5.39 84.66 0.46 1.69 16 15 N -0.91 -51.89 12.91 21.45 0.28 -51.61 16 16 Si 0.95 42.06 29.55 68.60 2.03 44.09 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 C -0.17 -6.93 9.96 30.61 0.30 -6.62 16 21 C -0.16 -7.46 9.42 30.62 0.29 -7.17 16 22 C -0.13 -2.94 6.76 31.18 0.21 -2.73 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.04 0.92 7.34 -2.39 -0.02 0.90 16 26 H 0.06 0.81 7.96 -2.39 -0.02 0.79 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 30 H 0.10 1.40 8.06 -2.39 -0.02 1.39 16 31 H 0.07 2.09 7.25 -2.39 -0.02 2.07 16 32 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.12 2.23 7.88 -2.38 -0.02 2.21 16 34 H 0.41 13.72 8.36 -92.71 -0.78 12.95 16 35 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.07 3.03 8.14 -2.39 -0.02 3.02 16 42 H 0.09 1.81 7.75 -2.39 -0.02 1.79 16 43 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -64.10 351.08 4.07 -60.03 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.19 Total: 28.22 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.16 Total: -23.96 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.26 Total: -81.03 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -64.10 4.07 -60.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352648631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.383 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds