Wall clock time and date at job start Mon Mar 30 2020 08:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00018 * 2 1 4 4 N 1.46499 * 109.47242 * 124.99605 * 3 2 1 5 5 C 1.46500 * 120.00123 * 270.00254 * 4 3 2 6 6 C 1.50700 * 109.47101 * 269.99899 * 5 4 3 7 7 H 1.08002 * 120.00255 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00213 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99754 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00483 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47039 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47339 * 119.99560 * 10 8 6 13 13 H 1.48494 * 109.47251 * 239.99972 * 10 8 6 14 14 C 1.34779 * 119.99712 * 90.00414 * 4 3 2 15 15 O 1.21282 * 119.99927 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00033 * 359.97438 * 14 4 3 17 17 C 1.53006 * 109.46866 * 180.02562 * 16 14 4 18 18 C 1.53777 * 113.61386 * 274.13321 * 17 16 14 19 19 C 1.53950 * 87.02290 * 220.05104 * 18 17 16 20 20 C 1.53002 * 113.53668 * 270.81621 * 19 18 17 21 21 C 1.53001 * 113.74480 * 139.94446 * 19 18 17 22 22 C 1.53780 * 113.61053 * 176.52675 * 17 16 14 23 23 H 1.08006 * 119.99676 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00336 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00251 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47354 * 5.00063 * 3 2 1 27 27 H 1.09003 * 109.47595 * 244.99874 * 3 2 1 28 28 H 1.08993 * 109.47349 * 29.99900 * 5 4 3 29 29 H 1.09005 * 109.47039 * 150.00075 * 5 4 3 30 30 H 0.96998 * 120.00012 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47512 * 60.00410 * 16 14 4 32 32 H 1.09000 * 109.47247 * 300.00119 * 16 14 4 33 33 H 1.08998 * 112.84948 * 45.33195 * 17 16 14 34 34 H 1.08999 * 113.61825 * 334.57628 * 18 17 16 35 35 H 1.09009 * 113.61337 * 105.47075 * 18 17 16 36 36 H 1.09007 * 109.47013 * 157.49311 * 20 19 18 37 37 H 1.08998 * 109.47014 * 277.48731 * 20 19 18 38 38 H 1.08998 * 109.47348 * 37.49007 * 20 19 18 39 39 H 1.08999 * 109.46898 * 322.40347 * 21 19 18 40 40 H 1.08997 * 109.47016 * 82.40386 * 21 19 18 41 41 H 1.08996 * 109.46824 * 202.40468 * 21 19 18 42 42 H 1.08992 * 113.61837 * 254.52753 * 22 17 16 43 43 H 1.09001 * 113.61413 * 25.43567 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8440 3.3437 2.4804 7 1 3.3038 3.8370 1.6368 8 6 2.5191 4.0666 3.6086 9 7 1.9597 3.4658 4.6360 10 14 2.8721 5.8996 3.6772 11 1 3.5001 6.3308 2.4024 12 1 1.6016 6.6412 3.8793 13 1 3.7960 6.1839 4.8045 14 6 4.2496 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6968 0.3174 -0.3479 17 6 6.1531 -0.1411 -0.2469 18 6 7.1717 0.9844 -0.4928 19 6 8.0008 -0.0472 -1.2793 20 6 8.9917 -0.8248 -0.4107 21 6 8.6395 0.5159 -2.5505 22 6 6.6827 -0.7978 -1.5326 23 1 -0.5400 -0.9354 -0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 1.4886 1.6967 2.5459 29 1 3.0988 1.3603 3.2260 30 1 1.7314 3.9743 5.4299 31 1 4.6120 1.0937 -1.1083 32 1 4.0677 -0.5296 -0.6216 33 1 6.3526 -0.7214 0.6540 34 1 6.7855 1.7959 -1.1095 35 1 7.6601 1.3374 0.4156 36 1 9.2423 -1.7664 -0.8996 37 1 9.8974 -0.2338 -0.2748 38 1 8.5414 -1.0284 0.5608 39 1 7.9516 1.2171 -3.0228 40 1 9.5650 1.0317 -2.2943 41 1 8.8570 -0.2998 -3.2398 42 1 6.7769 -1.8814 -1.4626 43 1 6.1625 -0.4744 -2.4342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359421511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:09 Heat of formation + Delta-G solvation = -32.293462 kcal Electronic energy + Delta-G solvation = -20543.941522 eV Core-core repulsion = 17588.982066 eV Total energy + Delta-G solvation = -2954.959456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21425 -39.94087 -37.16076 -35.15662 -33.64118 -33.15707 -30.15379 -28.40544 -28.21857 -26.82803 -26.55695 -24.82670 -21.92538 -21.02313 -19.77511 -19.13602 -18.62739 -17.72903 -17.30764 -16.53040 -16.22201 -15.83441 -15.60083 -15.15719 -14.92515 -14.58393 -14.35531 -14.12395 -13.81852 -13.55970 -13.40600 -13.13636 -12.94407 -12.87321 -12.71311 -12.64062 -12.60469 -12.25918 -12.21540 -12.17832 -11.65795 -11.61203 -11.40033 -10.91084 -10.82674 -10.66243 -10.45581 -10.29797 -9.43050 -8.23230 -6.38184 1.33752 1.35409 1.37062 1.48905 1.91004 2.34584 2.55373 3.06079 3.57543 3.67838 3.78612 3.83402 4.00354 4.14617 4.26346 4.33719 4.40551 4.47868 4.62645 4.73066 4.80263 4.82290 4.87260 4.90210 4.95031 5.03550 5.03614 5.07512 5.08293 5.09713 5.21546 5.23915 5.33335 5.37925 5.53316 5.63544 5.71833 5.72635 5.77667 5.98257 6.06631 6.70129 6.83233 7.28394 7.54406 8.84115 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.005351 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.484732 B = 5231.869804 C = 6379.259868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.182 4.182 3 C 0.133 3.867 4 N -0.603 5.603 5 C 0.264 3.736 6 C -0.540 4.540 7 H 0.052 0.948 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.267 1.267 12 H -0.268 1.268 13 H -0.282 1.282 14 C 0.494 3.506 15 O -0.597 6.597 16 C -0.115 4.115 17 C -0.099 4.099 18 C -0.133 4.133 19 C -0.086 4.086 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.109 4.109 23 H 0.116 0.884 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.018 0.982 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -8.633 -17.995 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.011 3.989 4 N -0.333 5.333 5 C 0.142 3.858 6 C -0.579 4.579 7 H 0.071 0.929 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.193 1.193 13 H -0.208 1.208 14 C 0.284 3.716 15 O -0.478 6.478 16 C -0.155 4.155 17 C -0.118 4.118 18 C -0.171 4.171 19 C -0.086 4.086 20 C -0.187 4.187 21 C -0.188 4.188 22 C -0.146 4.146 23 H 0.135 0.865 24 H 0.115 0.885 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.036 0.964 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.855 -8.577 -17.338 20.211 hybrid contribution -0.086 1.058 1.140 1.557 sum 5.769 -7.519 -16.199 18.767 Atomic orbital electron populations 1.24040 0.95609 1.02787 0.98602 1.23348 0.96754 0.98375 1.01616 1.20814 0.92665 0.96180 0.89214 1.48267 1.12044 1.60111 1.12888 1.18649 0.93605 0.92710 0.80796 1.21734 1.40345 0.94458 1.01348 0.92926 1.25870 0.94670 1.03809 0.94848 1.70068 1.42978 1.38072 1.05794 0.85367 0.78251 0.79013 0.78175 1.19080 1.19277 1.20804 1.21567 0.81111 0.77379 0.91567 1.90621 1.54001 1.58527 1.44672 1.21751 0.98013 1.02728 0.92990 1.22233 0.92118 0.98409 0.99018 1.23193 0.97741 0.96883 0.99269 1.21789 0.94525 0.96097 0.96164 1.21608 0.98164 1.00214 0.98679 1.21698 1.00394 1.00929 0.95769 1.23068 0.95179 0.99799 0.96565 0.86544 0.88495 0.86595 0.90859 0.87369 0.96392 0.98911 0.92442 0.87253 0.86729 0.91299 0.89999 0.94522 0.90836 0.92398 0.94086 0.92222 0.92893 0.91209 0.90476 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 14.32 67.79 0.97 -3.20 16 2 C -0.18 -4.88 9.74 25.65 0.25 -4.63 16 3 C 0.13 4.23 5.65 85.63 0.48 4.71 16 4 N -0.60 -26.25 2.44 -830.50 -2.03 -28.27 16 5 C 0.26 14.75 5.16 85.63 0.44 15.19 16 6 C -0.54 -31.97 9.39 25.60 0.24 -31.72 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.40 5.46 84.65 0.46 0.86 16 9 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 10 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 14 C 0.49 21.01 7.67 87.66 0.67 21.68 16 15 O -0.60 -31.94 15.37 -3.04 -0.05 -31.98 16 16 C -0.12 -3.22 4.08 29.85 0.12 -3.10 16 17 C -0.10 -2.72 2.76 -10.27 -0.03 -2.74 16 18 C -0.13 -3.69 6.76 31.18 0.21 -3.48 16 19 C -0.09 -1.76 1.39 -51.59 -0.07 -1.83 16 20 C -0.13 -2.64 9.07 71.98 0.65 -1.99 16 21 C -0.13 -2.13 9.20 71.98 0.66 -1.47 16 22 C -0.11 -2.05 6.79 31.12 0.21 -1.83 16 23 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 24 H 0.10 2.37 7.84 -2.91 -0.02 2.34 16 25 H 0.12 2.83 7.83 -2.91 -0.02 2.81 16 26 H 0.07 2.48 7.72 -2.39 -0.02 2.47 16 27 H 0.11 2.64 6.44 -2.39 -0.02 2.62 16 28 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 29 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.11 2.56 7.13 -2.39 -0.02 2.55 16 32 H 0.11 2.53 7.77 -2.39 -0.02 2.51 16 33 H 0.07 2.29 7.25 -2.39 -0.02 2.27 16 34 H 0.08 2.14 7.75 -2.39 -0.02 2.12 16 35 H 0.04 1.22 8.10 -2.38 -0.02 1.20 16 36 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.04 0.99 7.34 -2.39 -0.02 0.97 16 39 H 0.06 0.93 7.96 -2.39 -0.02 0.91 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 43 H 0.10 1.51 8.06 -2.39 -0.02 1.49 16 Total: -1.00 -74.86 350.92 6.46 -68.40 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.94 Total: 14.77 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 5.28 Total: -13.55 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.74 Total: -85.47 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.98 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.86 6.46 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359421511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.106 kcal (2) G-P(sol) polarization free energy of solvation -74.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds