Wall clock time and date at job start Mon Mar 30 2020 08:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00057 * 2 1 4 4 N 1.46500 * 109.47300 * 124.99609 * 3 2 1 5 5 C 1.46492 * 120.00092 * 269.99880 * 4 3 2 6 6 C 1.50702 * 109.47326 * 269.99699 * 5 4 3 7 7 H 1.08000 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99770 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00545 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99481 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47569 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47271 * 120.00262 * 10 8 6 13 13 H 1.48503 * 109.47117 * 240.00248 * 10 8 6 14 14 C 1.34783 * 119.99665 * 90.00271 * 4 3 2 15 15 O 1.21279 * 119.99873 * 180.02562 * 14 4 3 16 16 C 1.50699 * 119.99993 * 359.97438 * 14 4 3 17 17 C 1.53003 * 109.47202 * 180.02562 * 16 14 4 18 18 C 1.52998 * 110.05489 * 58.58041 * 17 16 14 19 19 C 1.53869 * 110.03485 * 180.02562 * 17 16 14 20 20 C 1.54270 * 106.63967 * 119.25869 * 19 17 16 21 21 C 1.55005 * 104.13720 * 23.62421 * 20 19 17 22 22 C 1.54268 * 110.02859 * 297.17152 * 17 16 14 23 23 H 1.08002 * 119.99977 * 180.02562 * 1 2 3 24 24 H 1.07998 * 120.00161 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.99711 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47347 * 4.99648 * 3 2 1 27 27 H 1.08997 * 109.47043 * 244.99944 * 3 2 1 28 28 H 1.09000 * 109.47292 * 30.00588 * 5 4 3 29 29 H 1.09006 * 109.46870 * 150.00002 * 5 4 3 30 30 H 0.96997 * 120.00352 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47172 * 60.00477 * 16 14 4 32 32 H 1.08997 * 109.47621 * 300.00205 * 16 14 4 33 33 H 1.08998 * 109.47417 * 181.41792 * 18 17 16 34 34 H 1.08995 * 109.47912 * 301.42187 * 18 17 16 35 35 H 1.09003 * 109.46563 * 61.42261 * 18 17 16 36 36 H 1.09002 * 110.03268 * 238.56956 * 19 17 16 37 37 H 1.08995 * 110.03391 * 359.95262 * 19 17 16 38 38 H 1.08998 * 110.48170 * 142.31277 * 20 19 17 39 39 H 1.08998 * 110.48753 * 264.95665 * 20 19 17 40 40 H 1.09001 * 110.74691 * 203.73447 * 21 20 19 41 41 H 1.09005 * 110.92280 * 80.43999 * 21 20 19 42 42 H 1.09003 * 110.49208 * 335.77788 * 22 17 16 43 43 H 1.08998 * 110.48781 * 98.29484 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8650 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3034 3.8371 1.6364 8 6 2.5184 4.0668 3.6081 9 7 1.9589 3.4662 4.6355 10 14 2.8716 5.8999 3.6766 11 1 3.4996 6.3310 2.4018 12 1 1.6009 6.6417 3.8776 13 1 3.7946 6.1843 4.8046 14 6 4.2497 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6969 0.3174 -0.3479 17 6 6.1531 -0.1412 -0.2470 18 6 6.2933 -1.2069 0.8419 19 6 6.6236 -0.7038 -1.5996 20 6 7.8047 0.1766 -2.0575 21 6 8.3539 0.7870 -0.7428 22 6 7.0651 1.0618 0.0706 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 1.4887 1.6967 2.5459 29 1 3.0989 1.3604 3.2259 30 1 1.7300 3.9748 5.4291 31 1 4.6121 1.0937 -1.1083 32 1 4.0679 -0.5296 -0.6216 33 1 7.3377 -1.5084 0.9229 34 1 5.9580 -0.7987 1.7952 35 1 5.6842 -2.0730 0.5830 36 1 6.9517 -1.7365 -1.4807 37 1 5.8143 -0.6510 -2.3278 38 1 8.5673 -0.4313 -2.5444 39 1 7.4571 0.9629 -2.7276 40 1 8.8899 1.7150 -0.9423 41 1 8.9956 0.0764 -0.2219 42 1 6.5985 1.9912 -0.2562 43 1 7.2864 1.1017 1.1372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359424387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:36 Heat of formation + Delta-G solvation = -53.335124 kcal Electronic energy + Delta-G solvation = -21090.208042 eV Core-core repulsion = 18134.336151 eV Total energy + Delta-G solvation = -2955.871891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22500 -39.12777 -37.08808 -35.13867 -33.63574 -33.03479 -30.18361 -29.53009 -28.39138 -26.81560 -25.79755 -24.35930 -21.52450 -21.18614 -20.12201 -19.32338 -18.62678 -17.72512 -17.24445 -16.43386 -16.30774 -15.99681 -15.67821 -15.30742 -14.73896 -14.60696 -14.30961 -14.15134 -14.02795 -13.54058 -13.32509 -12.96378 -12.87964 -12.71713 -12.61897 -12.43043 -12.22412 -12.16468 -11.96868 -11.84973 -11.68167 -11.55901 -11.40503 -11.31555 -11.21190 -10.65740 -10.29744 -10.23725 -9.36644 -8.22396 -6.37149 1.33742 1.35378 1.36735 1.48533 1.95496 2.34935 2.57428 3.06803 3.63809 3.71975 3.83613 3.97828 4.14172 4.27358 4.34116 4.40225 4.49583 4.56609 4.60429 4.68036 4.74540 4.84017 4.90348 4.90855 5.00866 5.04938 5.07609 5.09834 5.20213 5.22966 5.26108 5.30766 5.47336 5.50138 5.54630 5.58186 5.71817 5.72123 5.79137 5.99916 6.08231 6.71606 6.87273 7.29865 7.60633 8.84631 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.006206 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.739650 B = 4510.799174 C = 5593.316223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.181 4.181 3 C 0.134 3.866 4 N -0.604 5.604 5 C 0.266 3.734 6 C -0.538 4.538 7 H 0.052 0.948 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.269 1.269 13 H -0.282 1.282 14 C 0.495 3.505 15 O -0.578 6.578 16 C -0.118 4.118 17 C -0.047 4.047 18 C -0.146 4.146 19 C -0.109 4.109 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.110 4.110 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.016 0.984 29 H -0.005 1.005 30 H 0.266 0.734 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -8.635 -16.863 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C 0.011 3.989 4 N -0.335 5.335 5 C 0.144 3.856 6 C -0.577 4.577 7 H 0.070 0.930 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.194 1.194 13 H -0.208 1.208 14 C 0.285 3.715 15 O -0.458 6.458 16 C -0.157 4.157 17 C -0.047 4.047 18 C -0.203 4.203 19 C -0.147 4.147 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.148 4.148 23 H 0.134 0.866 24 H 0.115 0.885 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.129 -8.583 -16.203 19.040 hybrid contribution -0.158 1.086 1.049 1.519 sum 4.970 -7.496 -15.154 17.622 Atomic orbital electron populations 1.24036 0.95611 1.02763 0.98668 1.23350 0.96742 0.98373 1.01565 1.20783 0.92692 0.96104 0.89283 1.48262 1.12106 1.60356 1.12769 1.18620 0.93510 0.92610 0.80830 1.21730 1.40198 0.94518 1.01229 0.93000 1.25845 0.94734 1.03657 0.94910 1.70060 1.43040 1.38007 1.05811 0.85399 0.78224 0.79226 0.78151 1.19128 1.19377 1.20801 1.21415 0.81088 0.77513 0.91495 1.90570 1.53364 1.57523 1.44389 1.21945 0.97937 1.02539 0.93322 1.20935 0.92329 0.95149 0.96301 1.22062 1.01228 0.97661 0.99369 1.22256 0.98533 0.99565 0.94316 1.22354 0.97595 0.99122 0.96412 1.22527 0.96313 1.00698 0.96554 1.22357 0.96301 0.96984 0.99151 0.86553 0.88529 0.86654 0.90976 0.87638 0.96636 0.98685 0.92479 0.87763 0.87158 0.92619 0.93368 0.92418 0.90673 0.90041 0.90185 0.91193 0.91619 0.91598 0.93744 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 14.32 67.78 0.97 -3.23 16 2 C -0.18 -4.88 9.74 25.64 0.25 -4.63 16 3 C 0.13 4.25 5.65 85.63 0.48 4.74 16 4 N -0.60 -25.98 2.44 -830.52 -2.03 -28.01 16 5 C 0.27 14.69 5.16 85.64 0.44 15.13 16 6 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 7 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.43 5.46 84.66 0.46 0.89 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 10 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 14 C 0.50 20.45 7.13 87.66 0.63 21.08 16 15 O -0.58 -29.24 11.73 -3.03 -0.04 -29.27 16 16 C -0.12 -3.29 2.96 29.85 0.09 -3.21 16 17 C -0.05 -1.25 0.63 -51.46 -0.03 -1.28 16 18 C -0.15 -4.31 7.83 71.98 0.56 -3.75 16 19 C -0.11 -2.03 6.11 31.32 0.19 -1.84 16 20 C -0.12 -2.07 6.84 31.71 0.22 -1.85 16 21 C -0.12 -2.81 6.91 31.92 0.22 -2.59 16 22 C -0.11 -3.39 4.73 31.66 0.15 -3.24 16 23 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 24 H 0.10 2.38 7.84 -2.91 -0.02 2.35 16 25 H 0.12 2.84 7.83 -2.91 -0.02 2.81 16 26 H 0.07 2.46 7.72 -2.39 -0.02 2.44 16 27 H 0.11 2.63 6.44 -2.39 -0.02 2.61 16 28 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 29 H 0.00 -0.32 7.42 -2.38 -0.02 -0.34 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.10 2.53 7.38 -2.39 -0.02 2.51 16 32 H 0.11 2.49 7.77 -2.39 -0.02 2.47 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.86 5.41 -2.39 -0.01 1.85 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.26 7.67 -2.39 -0.02 1.24 16 37 H 0.08 1.24 7.67 -2.39 -0.02 1.22 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 43 H 0.04 1.50 7.15 -2.39 -0.02 1.48 16 Total: -1.00 -72.33 340.43 6.07 -66.26 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.95 Total: 15.41 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.87 Total: -15.15 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -1.74 Total: -85.00 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.04 Total: -29.27 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.33 6.07 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359424387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.928 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds