Wall clock time and date at job start Mon Mar 30 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47079 * 269.99852 * 3 2 1 5 5 H 1.48504 * 109.47045 * 29.99385 * 3 2 1 6 6 H 1.48500 * 109.47194 * 149.99812 * 3 2 1 7 7 C 1.37877 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47255 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47159 * 180.02562 * 11 10 9 13 13 C 1.45718 * 117.83130 * 90.00265 * 12 11 10 14 14 C 1.52970 * 110.54752 * 160.49309 * 13 12 11 15 15 C 1.52887 * 108.77630 * 50.10607 * 14 13 12 16 16 C 1.53869 * 109.91034 * 172.58719 * 15 14 13 17 17 C 1.54986 * 104.10009 * 217.12588 * 16 15 14 18 18 C 1.54927 * 102.79911 * 37.60334 * 17 16 15 19 19 C 1.53496 * 110.09090 * 54.96048 * 15 14 13 20 20 C 1.52613 * 109.50403 * 293.59716 * 15 14 13 21 21 C 1.33336 * 117.83323 * 270.02096 * 12 11 10 22 22 O 1.21280 * 118.28895 * 2.67802 * 21 12 11 23 23 H 0.97005 * 120.00264 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47056 * 59.99469 * 9 7 2 25 25 H 1.08994 * 109.46734 * 299.99764 * 9 7 2 26 26 H 1.09001 * 109.47259 * 59.99933 * 10 9 7 27 27 H 1.08997 * 109.47241 * 300.00247 * 10 9 7 28 28 H 1.09001 * 109.46819 * 59.99937 * 11 10 9 29 29 H 1.08997 * 109.47421 * 300.00411 * 11 10 9 30 30 H 1.09000 * 109.26104 * 40.21914 * 13 12 11 31 31 H 1.08995 * 109.25991 * 280.76504 * 13 12 11 32 32 H 1.09005 * 109.59178 * 290.31936 * 14 13 12 33 33 H 1.09003 * 109.58467 * 169.89313 * 14 13 12 34 34 H 1.09001 * 110.50553 * 335.77734 * 16 15 14 35 35 H 1.08991 * 110.50641 * 98.47303 * 16 15 14 36 36 H 1.08994 * 110.74904 * 279.27324 * 17 16 15 37 37 H 1.09007 * 110.90007 * 156.00075 * 17 16 15 38 38 H 1.09001 * 110.48387 * 203.58831 * 18 17 16 39 39 H 1.08993 * 110.59855 * 81.00672 * 18 17 16 40 40 H 1.09003 * 110.05668 * 238.53240 * 19 15 14 41 41 H 1.09002 * 110.06297 * 0.03890 * 19 15 14 42 42 H 1.09000 * 109.39795 * 167.98868 * 20 15 14 43 43 H 1.08997 * 109.39859 * 287.72863 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 6 2.8743 -6.6170 1.2907 14 6 3.4496 -8.0260 1.1359 15 6 4.4736 -8.0174 0.0006 16 6 5.2027 -9.3711 -0.0577 17 6 6.6603 -8.9992 -0.4309 18 6 6.8910 -7.6843 0.3553 19 6 5.5398 -6.9441 0.2603 20 6 3.7642 -7.7477 -1.3234 21 6 2.8373 -6.5741 -1.1770 22 8 2.4369 -6.0289 -2.1837 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8539 -5.0446 0.8913 30 1 2.0268 -6.6480 1.9754 31 1 3.6412 -5.9583 1.6981 32 1 2.6471 -8.7244 0.8987 33 1 3.9357 -8.3262 2.0642 34 1 5.1713 -9.8638 0.9141 35 1 4.7632 -10.0088 -0.8245 36 1 6.7528 -8.8290 -1.5035 37 1 7.3551 -9.7723 -0.1027 38 1 7.6820 -7.0957 -0.1095 39 1 7.1368 -7.8976 1.3956 40 1 5.5611 -6.2312 -0.5640 41 1 5.3298 -6.4273 1.1968 42 1 4.5047 -7.5304 -2.0932 43 1 3.1907 -8.6282 -1.6128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382145964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:41 Heat of formation + Delta-G solvation = -87.629118 kcal Electronic energy + Delta-G solvation = -20800.257748 eV Core-core repulsion = 17842.898757 eV Total energy + Delta-G solvation = -2957.358990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95802 -39.39157 -37.27426 -35.80730 -34.16527 -32.42619 -30.78817 -29.63441 -28.65151 -26.53068 -24.97658 -24.33010 -22.32261 -21.49576 -20.88851 -18.72825 -18.33741 -17.77456 -17.36492 -16.79614 -16.45709 -16.25448 -15.88558 -15.49668 -14.97015 -14.63705 -14.29112 -14.20705 -13.92805 -13.84388 -13.40969 -13.19244 -12.97263 -12.67958 -12.66738 -12.47464 -12.31100 -12.00103 -11.87805 -11.78055 -11.58514 -11.55158 -11.43472 -11.35588 -11.33020 -11.20944 -10.59003 -10.54625 -9.65122 -8.22922 -6.34726 1.36720 1.39199 1.50056 1.64961 2.08310 2.39003 3.09569 3.49989 3.59172 3.59633 3.75916 4.08469 4.14087 4.19500 4.31292 4.35222 4.40716 4.48916 4.57294 4.61956 4.68388 4.75342 4.80768 4.83034 4.86572 4.96481 4.99566 5.03722 5.12282 5.13540 5.15836 5.22907 5.31102 5.41452 5.44768 5.48357 5.55178 5.56486 5.67711 5.79797 6.21060 6.56302 6.80368 7.21521 7.34223 8.88954 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.004071 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.010459 B = 6877.047481 C = 7257.335863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.099 4.099 11 C 0.115 3.885 12 N -0.594 5.594 13 C 0.100 3.900 14 C -0.114 4.114 15 C -0.060 4.060 16 C -0.105 4.105 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.111 4.111 21 C 0.502 3.498 22 O -0.612 6.612 23 H 0.265 0.735 24 H -0.016 1.016 25 H 0.005 0.995 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.474 -23.021 5.607 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.137 4.137 11 C -0.008 4.008 12 N -0.324 5.324 13 C -0.022 4.022 14 C -0.152 4.152 15 C -0.061 4.061 16 C -0.142 4.142 17 C -0.163 4.163 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.150 4.150 21 C 0.292 3.708 22 O -0.495 6.495 23 H 0.074 0.926 24 H 0.002 0.998 25 H 0.023 0.977 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.141 -22.673 5.134 26.227 hybrid contribution -0.101 1.544 -0.469 1.617 sum 12.039 -21.129 4.665 24.762 Atomic orbital electron populations 1.70092 1.07756 1.27893 1.51419 1.25990 0.95838 1.03372 0.94527 0.85428 0.78746 0.78310 0.78449 1.20075 1.20106 1.18648 1.21635 0.93301 0.92495 1.50974 0.92744 1.18914 0.94254 0.92773 0.94947 1.21616 0.98365 0.94133 0.99629 1.21488 0.91548 0.85414 1.02392 1.47464 1.44408 1.33505 1.07037 1.21811 1.00673 0.96428 0.83240 1.21962 0.98624 0.94581 0.99986 1.20993 0.95052 0.97065 0.92954 1.22410 0.94450 0.94225 1.03138 1.22532 0.96927 0.97046 0.99746 1.22367 0.95828 0.96451 1.01189 1.22340 0.95309 0.97193 1.01341 1.21775 0.97624 0.95474 1.00170 1.20979 0.81611 0.85794 0.82381 1.90715 1.59392 1.61508 1.37908 0.92616 0.99786 0.97714 0.92340 0.95575 0.92766 0.88846 0.89027 0.91362 0.89963 0.86857 0.89194 0.90586 0.92276 0.90142 0.92454 0.90324 0.94560 0.91058 0.88959 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.51 13.29 21.45 0.28 -58.22 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -32.97 9.11 25.60 0.23 -32.73 16 8 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.10 -4.52 5.47 30.59 0.17 -4.36 16 11 C 0.11 4.35 5.19 86.38 0.45 4.80 16 12 N -0.59 -18.06 2.81 -826.54 -2.32 -20.39 16 13 C 0.10 2.01 5.86 86.52 0.51 2.52 16 14 C -0.11 -1.52 4.73 30.55 0.14 -1.37 16 15 C -0.06 -0.94 0.63 -51.89 -0.03 -0.97 16 16 C -0.10 -1.09 5.90 31.57 0.19 -0.90 16 17 C -0.13 -1.44 6.91 31.93 0.22 -1.22 16 18 C -0.12 -1.70 6.84 31.72 0.22 -1.48 16 19 C -0.12 -2.30 5.35 31.22 0.17 -2.13 16 20 C -0.11 -2.44 4.56 29.58 0.13 -2.30 16 21 C 0.50 16.63 7.14 87.74 0.63 17.26 16 22 O -0.61 -27.35 16.21 -3.03 -0.05 -27.40 16 23 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 24 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 25 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 2.35 7.21 -2.39 -0.02 2.34 16 29 H 0.09 3.08 7.84 -2.39 -0.02 3.06 16 30 H 0.09 1.58 7.90 -2.39 -0.02 1.56 16 31 H 0.07 1.40 6.50 -2.39 -0.02 1.39 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 33 H 0.11 0.92 8.01 -2.39 -0.02 0.90 16 34 H 0.09 0.65 7.76 -2.39 -0.02 0.63 16 35 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.04 0.89 7.53 -2.39 -0.02 0.87 16 41 H 0.07 1.31 6.00 -2.39 -0.01 1.30 16 42 H 0.09 2.13 7.99 -2.39 -0.02 2.11 16 43 H 0.11 2.06 7.90 -2.39 -0.02 2.04 16 Total: -1.00 -76.40 332.94 4.53 -71.87 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.96 Total: 6.83 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.63 Total: -20.62 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -2.04 Total: -78.61 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.40 4.53 -71.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382145964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal (2) G-P(sol) polarization free energy of solvation -76.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds