Wall clock time and date at job start Mon Mar 30 2020 07:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48500 * 109.46839 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47204 * 300.00308 * 3 2 1 6 6 H 1.48499 * 109.47104 * 59.99942 * 3 2 1 7 7 C 1.37872 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99758 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46650 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46786 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47202 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47437 * 180.02562 * 12 11 10 14 14 C 1.36201 * 125.57679 * 89.97001 * 13 12 11 15 15 O 1.21282 * 125.18243 * 6.81782 * 14 13 12 16 16 C 1.52586 * 109.63368 * 186.81432 * 14 13 12 17 17 C 1.53165 * 102.37559 * 18.89719 * 16 14 13 18 18 H 1.09001 * 111.12880 * 83.20414 * 17 16 14 19 19 C 1.51751 * 116.54642 * 212.54780 * 17 16 14 20 20 C 1.53790 * 107.05330 * 174.10994 * 19 17 16 21 21 C 1.52546 * 111.89390 * 302.48558 * 20 19 17 22 22 C 1.54118 * 111.42701 * 54.20593 * 21 20 19 23 23 C 1.44521 * 125.57318 * 270.00428 * 13 12 11 24 24 H 1.09001 * 108.59871 * 265.01668 * 23 13 12 25 25 H 0.96999 * 120.00292 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47304 * 59.99374 * 9 7 2 27 27 H 1.08998 * 109.46529 * 299.99022 * 9 7 2 28 28 H 1.09002 * 109.47309 * 59.99894 * 10 9 7 29 29 H 1.08999 * 109.47428 * 299.99136 * 10 9 7 30 30 H 1.09004 * 109.47394 * 59.99982 * 11 10 9 31 31 H 1.08997 * 109.47559 * 300.00046 * 11 10 9 32 32 H 1.09002 * 109.46905 * 60.00368 * 12 11 10 33 33 H 1.09005 * 109.47191 * 300.00239 * 12 11 10 34 34 H 1.08995 * 110.82406 * 137.11686 * 16 14 13 35 35 H 1.08999 * 110.82616 * 260.67307 * 16 14 13 36 36 H 1.09002 * 109.93875 * 54.72306 * 19 17 16 37 37 H 1.09000 * 110.00477 * 293.52868 * 19 17 16 38 38 H 1.09000 * 108.99986 * 181.86194 * 20 19 17 39 39 H 1.08997 * 109.00052 * 63.10328 * 20 19 17 40 40 H 1.08995 * 109.08234 * 293.70615 * 21 20 19 41 41 H 1.08999 * 109.03780 * 174.67237 * 21 20 19 42 42 H 1.09002 * 110.02527 * 183.34459 * 22 21 20 43 43 H 1.08994 * 110.02626 * 61.88011 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1500 0.0005 13 7 1.7422 -7.4187 0.0005 14 6 1.3451 -8.1045 -1.1072 15 8 1.6430 -7.8215 -2.2483 16 6 0.4684 -9.2829 -0.6939 17 6 0.0344 -8.8887 0.7212 18 1 -0.8231 -8.2164 0.6962 19 6 -0.1741 -10.0231 1.7073 20 6 -0.4541 -9.3837 3.0777 21 6 0.6784 -8.4609 3.5169 22 6 0.9856 -7.3970 2.4451 23 6 1.3222 -8.1471 1.1760 24 1 2.0760 -8.9000 1.4062 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6042 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.8533 -5.0451 -0.8886 31 1 0.8539 -5.0446 0.8913 32 1 3.1018 -6.0922 0.8901 33 1 3.1007 -6.0923 -0.8899 34 1 -0.3951 -9.3734 -1.3528 35 1 1.0445 -10.2081 -0.6790 36 1 0.7239 -10.6388 1.7610 37 1 -1.0244 -10.6322 1.4007 38 1 -0.5764 -10.1731 3.8193 39 1 -1.3779 -8.8082 3.0186 40 1 1.5740 -9.0560 3.6955 41 1 0.3917 -7.9620 4.4426 42 1 1.8351 -6.7887 2.7556 43 1 0.1117 -6.7656 2.2848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385202207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:16 Heat of formation + Delta-G solvation = -89.701490 kcal Electronic energy + Delta-G solvation = -20454.880669 eV Core-core repulsion = 17497.431814 eV Total energy + Delta-G solvation = -2957.448855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01734 -38.94482 -37.22824 -35.84355 -34.65049 -33.29017 -31.20478 -29.64514 -28.25240 -26.68797 -23.93397 -22.99632 -22.43648 -21.92542 -21.01913 -20.37048 -18.47542 -17.61561 -17.33288 -16.54861 -16.46318 -16.02592 -15.81664 -15.22895 -14.92056 -14.64390 -14.61486 -14.21774 -13.91126 -13.79087 -13.49904 -13.24211 -13.02019 -12.90975 -12.80732 -12.47469 -12.37785 -12.28197 -12.13243 -11.88806 -11.72076 -11.48246 -11.41560 -11.34616 -11.18096 -10.89072 -10.68073 -10.58733 -9.62174 -8.22181 -6.34127 1.38200 1.39114 1.45545 1.52689 2.03182 2.39546 3.10649 3.24529 3.45529 3.69006 3.95185 3.96091 4.10708 4.15141 4.18178 4.36243 4.37196 4.46969 4.49256 4.51598 4.57304 4.68792 4.71683 4.79863 4.83855 4.98531 5.00906 5.05494 5.20472 5.22059 5.25093 5.25979 5.30705 5.34580 5.40971 5.50187 5.59196 5.70855 5.72812 5.82614 6.13753 6.22096 6.83140 7.10519 7.35563 8.90061 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025735 B = 0.003808 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.767508 B = 7350.555367 C = 7952.475452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.117 4.117 12 C 0.134 3.866 13 N -0.615 5.615 14 C 0.499 3.501 15 O -0.582 6.582 16 C -0.132 4.132 17 C -0.099 4.099 18 H 0.080 0.920 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.120 4.120 23 C 0.118 3.882 24 H 0.086 0.914 25 H 0.264 0.736 26 H -0.019 1.019 27 H -0.007 1.007 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -24.192 8.750 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.133 4.133 11 C -0.156 4.156 12 C 0.012 3.988 13 N -0.347 5.347 14 C 0.289 3.711 15 O -0.462 6.462 16 C -0.171 4.171 17 C -0.118 4.118 18 H 0.098 0.902 19 C -0.135 4.135 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.158 4.158 23 C 0.014 3.986 24 H 0.104 0.896 25 H 0.072 0.928 26 H -0.001 1.001 27 H 0.012 0.988 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.836 -23.870 8.179 25.246 hybrid contribution 0.045 1.561 -0.413 1.615 sum 0.880 -22.310 7.766 23.639 Atomic orbital electron populations 1.70115 1.07924 1.27749 1.51775 1.26035 0.95797 1.03555 0.94636 0.85358 0.79092 0.78509 0.77848 1.18442 1.20490 1.20037 1.21758 0.93635 0.92363 1.50455 0.92005 1.19005 0.94453 0.93408 0.94425 1.21372 0.98025 0.93060 1.00875 1.21855 0.98480 0.94464 1.00809 1.21320 0.93433 0.80792 1.03232 1.48353 1.56237 1.22385 1.07744 1.22684 0.79656 0.85100 0.83667 1.90675 1.60105 1.72880 1.22490 1.22366 0.99986 0.96557 0.98229 1.22264 0.97019 0.99180 0.93333 0.90191 1.21407 1.03569 0.95613 0.92882 1.21576 0.98208 0.99054 0.97019 1.21548 0.99733 0.96267 0.97213 1.21605 1.01669 0.98536 0.93963 1.21491 0.97140 0.93669 0.86254 0.89648 0.92754 1.00069 0.98823 0.91702 0.93536 0.95020 0.91773 0.88129 0.91701 0.87557 0.85338 0.89832 0.89681 0.90068 0.92563 0.90607 0.91159 0.91459 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 11 C -0.12 -4.29 5.54 30.59 0.17 -4.12 16 12 C 0.13 3.97 5.72 86.38 0.49 4.47 16 13 N -0.61 -16.20 2.92 -796.30 -2.32 -18.53 16 14 C 0.50 14.58 8.07 88.04 0.71 15.29 16 15 O -0.58 -22.96 17.73 -3.04 -0.05 -23.01 16 16 C -0.13 -2.31 6.52 30.51 0.20 -2.11 16 17 C -0.10 -1.49 2.74 -10.32 -0.03 -1.52 16 18 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 19 C -0.10 -0.86 5.66 30.45 0.17 -0.68 16 20 C -0.12 -1.15 5.82 30.71 0.18 -0.98 16 21 C -0.11 -1.27 5.80 30.82 0.18 -1.09 16 22 C -0.12 -2.08 5.30 30.39 0.16 -1.92 16 23 C 0.12 2.14 2.60 45.61 0.12 2.26 16 24 H 0.09 1.27 7.61 -2.39 -0.02 1.26 16 25 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 26 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.06 2.26 7.60 -2.39 -0.02 2.24 16 32 H 0.10 2.46 7.99 -2.39 -0.02 2.45 16 33 H 0.06 2.12 8.00 -2.38 -0.02 2.10 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.13 1.59 8.11 -2.39 -0.02 1.57 16 36 H 0.08 0.55 7.88 -2.39 -0.02 0.53 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 0.71 8.11 -2.39 -0.02 0.69 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 1.24 7.99 -2.39 -0.02 1.22 16 43 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 Total: -1.00 -74.65 339.93 4.24 -70.41 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.94 Total: 6.55 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 3.36 Total: -24.39 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -2.04 Total: -76.87 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -74.65 4.24 -70.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385202207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.287 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds