Wall clock time and date at job start Mon Mar 30 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46499 * 120.00229 * 90.00338 * 3 2 1 5 5 C 1.53001 * 109.46957 * 89.99677 * 4 3 2 6 6 C 1.53005 * 109.46731 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46731 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46906 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.00172 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99935 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99952 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47199 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47166 * 119.99771 * 12 10 8 15 15 H 1.48498 * 109.46744 * 239.99304 * 12 10 8 16 16 C 1.39827 * 119.99990 * 270.00058 * 3 2 1 17 17 C 1.38879 * 120.04691 * 179.73079 * 16 3 2 18 18 C 1.38122 * 119.94581 * 179.76557 * 17 16 3 19 19 C 1.38460 * 120.04942 * 0.48660 * 18 17 16 20 20 F 1.35106 * 119.95014 * 179.74344 * 19 18 17 21 21 C 1.38460 * 120.10060 * 359.76329 * 19 18 17 22 22 C 1.38118 * 120.04932 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 27 27 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 28 28 H 1.08996 * 109.47662 * 209.99843 * 4 3 2 29 29 H 1.08998 * 109.46853 * 330.00155 * 4 3 2 30 30 H 1.09002 * 109.47227 * 299.99818 * 5 4 3 31 31 H 1.08992 * 109.47223 * 60.00230 * 5 4 3 32 32 H 1.08993 * 109.47039 * 299.99858 * 6 5 4 33 33 H 1.08998 * 109.47222 * 60.00390 * 6 5 4 34 34 H 1.09002 * 109.47227 * 299.99505 * 7 6 5 35 35 H 1.08998 * 109.47633 * 59.99913 * 7 6 5 36 36 H 0.96997 * 120.00552 * 180.02562 * 11 10 8 37 37 H 1.07995 * 120.02371 * 359.97438 * 17 16 3 38 38 H 1.07994 * 119.97225 * 180.22621 * 18 17 16 39 39 H 1.08006 * 119.97726 * 179.97438 * 21 19 18 40 40 H 1.08006 * 120.02464 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7076 1.8313 1.7103 6 6 3.9625 2.5521 3.0356 7 6 5.4073 2.3111 3.4775 8 6 5.6582 3.0205 4.7832 9 1 4.8664 3.5870 5.2509 10 6 6.8988 2.9473 5.3804 11 7 7.8631 2.2580 4.8107 12 14 7.2099 3.8273 6.9985 13 1 5.9725 4.5276 7.4270 14 1 7.6023 2.8369 8.0331 15 1 8.3025 4.8173 6.8214 16 6 2.2514 2.0403 -1.2109 17 6 2.7089 3.3516 -1.2121 18 6 2.9430 3.9991 -2.4095 19 6 2.7123 3.3453 -3.6079 20 9 2.9370 3.9823 -4.7780 21 6 2.2511 2.0397 -3.6092 22 6 2.0198 1.3868 -2.4142 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 2.0956 3.1410 1.1384 29 1 1.5819 1.6877 2.0284 30 1 3.8746 0.7621 1.8407 31 1 4.3884 2.2154 0.9507 32 1 3.7954 3.6213 2.9057 33 1 3.2817 2.1676 3.7951 34 1 5.5739 1.2418 3.6077 35 1 6.0885 2.6953 2.7182 36 1 8.7358 2.2061 5.2309 37 1 2.8848 3.8634 -0.2775 38 1 3.3024 5.0175 -2.4108 39 1 2.0714 1.5317 -4.5452 40 1 1.6597 0.3686 -2.4156 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385278297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:26 Heat of formation + Delta-G solvation = -38.269990 kcal Electronic energy + Delta-G solvation = -19374.793127 eV Core-core repulsion = 16296.114204 eV Total energy + Delta-G solvation = -3078.678923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.66723 -39.71161 -36.77687 -34.59884 -32.63324 -31.51068 -30.77918 -29.45828 -27.35899 -25.01135 -23.55701 -22.63422 -21.98960 -20.29484 -20.08673 -17.99497 -16.70977 -16.48634 -16.23139 -15.43318 -15.07323 -15.01918 -14.49943 -14.46124 -13.97268 -13.74792 -13.33788 -12.95264 -12.74977 -12.64080 -12.39458 -12.18114 -11.95166 -11.85258 -11.67337 -11.24899 -11.02355 -10.79768 -10.55449 -10.54025 -10.45300 -9.79148 -9.69224 -9.28038 -9.11664 -9.02313 -8.35403 -7.21040 -6.00010 -4.02576 1.25387 1.39702 3.06258 3.30332 3.37890 3.41779 3.69577 4.44217 4.45608 4.65839 4.76735 4.88832 5.06244 5.11310 5.20386 5.29996 5.33235 5.35756 5.49247 5.53812 5.63884 5.70799 5.75688 5.88661 5.99052 6.02285 6.08300 6.21938 6.26243 6.29431 6.45114 6.70680 6.82096 6.89279 7.10419 7.28900 7.47294 7.68082 7.82490 8.00377 8.42779 9.05171 9.61654 11.11278 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.003615 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.562549 B = 7743.733571 C = 8648.432563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.622 5.622 4 C 0.120 3.880 5 C -0.136 4.136 6 C -0.108 4.108 7 C 0.021 3.979 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.217 3.783 17 C -0.169 4.169 18 C -0.101 4.101 19 C 0.025 3.975 20 F -0.151 7.151 21 C -0.105 4.105 22 C -0.178 4.178 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 -2.856 -14.299 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.007 4.007 3 N -0.331 5.331 4 C -0.002 4.002 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.016 4.016 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.114 3.886 17 C -0.191 4.191 18 C -0.120 4.120 19 C 0.003 3.997 20 F -0.130 7.130 21 C -0.124 4.124 22 C -0.201 4.201 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.608 -2.988 -14.125 20.539 hybrid contribution 0.417 0.517 0.741 0.995 sum -14.191 -2.471 -13.384 19.663 Atomic orbital electron populations 1.22231 0.96495 1.01829 1.02463 1.21408 0.93792 0.82619 1.02890 1.46817 1.70184 1.13061 1.03013 1.21669 0.97554 0.97194 0.83810 1.22090 0.94986 1.01291 0.99063 1.21577 1.00836 0.98515 0.93709 1.19088 0.89642 0.96932 0.95933 1.21316 0.96765 1.31264 1.06525 0.92685 1.25038 0.96304 0.95527 0.97649 1.69976 1.03025 1.41306 1.39199 0.86559 0.78215 0.79529 0.83838 1.19742 1.21030 1.21009 1.17906 0.93166 0.91428 0.86114 1.20662 1.06138 0.93937 0.98385 1.20902 0.99870 1.00464 0.90808 1.17439 1.08566 0.92460 0.81190 1.91443 1.93249 1.82021 1.46309 1.20816 0.99696 0.93135 0.98768 1.20496 1.08570 1.00725 0.90264 0.92386 0.92462 0.91892 0.90422 0.90842 0.90826 0.90903 0.92380 0.92138 0.93384 0.93431 0.96765 0.96684 0.93077 0.84678 0.85021 0.85297 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.12 1.11 5.88 -4.04 -0.02 1.08 16 3 N -0.62 -7.30 2.61 -171.72 -0.45 -7.75 16 4 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 5 C -0.14 -2.18 5.54 -26.73 -0.15 -2.33 16 6 C -0.11 -2.12 5.15 -26.73 -0.14 -2.26 16 7 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 9 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 12 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 16 C 0.22 2.67 6.55 -83.74 -0.55 2.12 16 17 C -0.17 -2.13 9.21 -39.39 -0.36 -2.49 16 18 C -0.10 -1.24 10.02 -39.54 -0.40 -1.64 16 19 C 0.02 0.31 7.30 -39.42 -0.29 0.02 16 20 F -0.15 -2.00 17.27 2.25 0.04 -1.96 16 21 C -0.10 -1.17 10.02 -39.54 -0.40 -1.56 16 22 C -0.18 -1.96 9.21 -39.39 -0.36 -2.33 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.07 0.63 6.20 -51.93 -0.32 0.31 16 28 H 0.07 0.90 6.19 -51.93 -0.32 0.58 16 29 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.14 1.67 6.13 -52.49 -0.32 1.34 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.13 1.17 6.14 -52.48 -0.32 0.85 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -30.57 334.09 -8.83 -39.40 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.32 Total: -2.97 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.85 Total: -22.03 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.29 Total: -34.10 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.57 -8.83 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385278297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.128 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds