Wall clock time and date at job start Mon Mar 30 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46499 * 120.00229 * 90.00338 * 3 2 1 5 5 C 1.53001 * 109.46957 * 89.99677 * 4 3 2 6 6 C 1.53005 * 109.46731 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46731 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46906 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.00172 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99935 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99952 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47199 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47166 * 119.99771 * 12 10 8 15 15 H 1.48498 * 109.46744 * 239.99304 * 12 10 8 16 16 C 1.39827 * 119.99990 * 270.00058 * 3 2 1 17 17 C 1.38879 * 120.04691 * 179.73079 * 16 3 2 18 18 C 1.38122 * 119.94581 * 179.76557 * 17 16 3 19 19 C 1.38460 * 120.04942 * 0.48660 * 18 17 16 20 20 F 1.35106 * 119.95014 * 179.74344 * 19 18 17 21 21 C 1.38460 * 120.10060 * 359.76329 * 19 18 17 22 22 C 1.38118 * 120.04932 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 27 27 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 28 28 H 1.08996 * 109.47662 * 209.99843 * 4 3 2 29 29 H 1.08998 * 109.46853 * 330.00155 * 4 3 2 30 30 H 1.09002 * 109.47227 * 299.99818 * 5 4 3 31 31 H 1.08992 * 109.47223 * 60.00230 * 5 4 3 32 32 H 1.08993 * 109.47039 * 299.99858 * 6 5 4 33 33 H 1.08998 * 109.47222 * 60.00390 * 6 5 4 34 34 H 1.09002 * 109.47227 * 299.99505 * 7 6 5 35 35 H 1.08998 * 109.47633 * 59.99913 * 7 6 5 36 36 H 0.96997 * 120.00552 * 180.02562 * 11 10 8 37 37 H 1.07995 * 120.02371 * 359.97438 * 17 16 3 38 38 H 1.07994 * 119.97225 * 180.22621 * 18 17 16 39 39 H 1.08006 * 119.97726 * 179.97438 * 21 19 18 40 40 H 1.08006 * 120.02464 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7076 1.8313 1.7103 6 6 3.9625 2.5521 3.0356 7 6 5.4073 2.3111 3.4775 8 6 5.6582 3.0205 4.7832 9 1 4.8664 3.5870 5.2509 10 6 6.8988 2.9473 5.3804 11 7 7.8631 2.2580 4.8107 12 14 7.2099 3.8273 6.9985 13 1 5.9725 4.5276 7.4270 14 1 7.6023 2.8369 8.0331 15 1 8.3025 4.8173 6.8214 16 6 2.2514 2.0403 -1.2109 17 6 2.7089 3.3516 -1.2121 18 6 2.9430 3.9991 -2.4095 19 6 2.7123 3.3453 -3.6079 20 9 2.9370 3.9823 -4.7780 21 6 2.2511 2.0397 -3.6092 22 6 2.0198 1.3868 -2.4142 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 2.0956 3.1410 1.1384 29 1 1.5819 1.6877 2.0284 30 1 3.8746 0.7621 1.8407 31 1 4.3884 2.2154 0.9507 32 1 3.7954 3.6213 2.9057 33 1 3.2817 2.1676 3.7951 34 1 5.5739 1.2418 3.6077 35 1 6.0885 2.6953 2.7182 36 1 8.7358 2.2061 5.2309 37 1 2.8848 3.8634 -0.2775 38 1 3.3024 5.0175 -2.4108 39 1 2.0714 1.5317 -4.5452 40 1 1.6597 0.3686 -2.4156 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385278297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:26 Heat of formation + Delta-G solvation = -52.686175 kcal Electronic energy + Delta-G solvation = -19375.418260 eV Core-core repulsion = 16296.114204 eV Total energy + Delta-G solvation = -3079.304056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.65088 -40.62374 -37.79295 -36.20593 -34.40067 -32.60179 -31.61834 -30.86600 -28.65183 -26.50626 -24.63529 -23.75597 -23.12763 -21.84017 -21.19221 -18.91242 -18.43720 -17.63025 -17.43530 -16.51228 -16.41306 -16.21173 -15.92567 -15.56715 -15.06819 -14.68231 -14.40763 -14.15314 -13.92278 -13.81091 -13.74486 -13.38720 -13.24468 -13.11165 -12.85205 -12.67137 -12.35992 -12.21629 -12.12488 -11.92497 -11.57695 -11.38160 -11.34323 -11.13235 -10.56311 -10.52704 -10.01608 -8.21855 -8.12808 -6.31563 0.35692 0.45785 1.39818 1.40197 1.53559 2.16132 2.41094 2.77759 3.13031 3.52618 3.78969 3.91958 4.03516 4.14711 4.18075 4.35514 4.39905 4.46828 4.49263 4.53391 4.62765 4.75350 4.82080 4.92427 4.97832 4.99896 5.06438 5.16424 5.25811 5.30371 5.31672 5.34720 5.38470 5.42241 5.55779 5.77154 5.87314 5.90221 6.25371 6.36227 6.56135 6.86872 7.38205 8.91912 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.003615 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.562549 B = 7743.733571 C = 8648.432563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.624 5.624 4 C 0.130 3.870 5 C -0.122 4.122 6 C -0.095 4.095 7 C 0.022 3.978 8 C -0.542 4.542 9 H 0.062 0.938 10 C -0.003 4.003 11 N -0.936 5.936 12 Si 0.965 3.035 13 H -0.260 1.260 14 H -0.278 1.278 15 H -0.279 1.279 16 C 0.206 3.794 17 C -0.184 4.184 18 C -0.108 4.108 19 C 0.005 3.995 20 F -0.158 7.158 21 C -0.102 4.102 22 C -0.175 4.175 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.057 0.943 34 H -0.012 1.012 35 H -0.015 1.015 36 H 0.263 0.737 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 -3.058 -14.030 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.332 5.332 4 C 0.007 3.993 5 C -0.161 4.161 6 C -0.134 4.134 7 C -0.015 4.015 8 C -0.580 4.580 9 H 0.080 0.920 10 C -0.201 4.201 11 N -0.576 5.576 12 Si 0.790 3.210 13 H -0.183 1.183 14 H -0.204 1.204 15 H -0.205 1.205 16 C 0.103 3.897 17 C -0.207 4.207 18 C -0.128 4.128 19 C -0.016 4.016 20 F -0.137 7.137 21 C -0.121 4.121 22 C -0.197 4.197 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.006 0.994 35 H 0.003 0.997 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.189 -3.197 -13.868 21.555 hybrid contribution 0.933 0.541 0.619 1.244 sum -15.256 -2.656 -13.249 20.379 Atomic orbital electron populations 1.22154 0.95201 1.02836 1.02005 1.21600 0.94786 0.81371 1.03444 1.46858 1.70167 1.13853 1.02358 1.21461 0.95094 0.97945 0.84819 1.21906 0.97364 1.00146 0.96697 1.21371 0.96781 0.99461 0.95739 1.19025 0.93048 0.94747 0.94654 1.21786 0.97234 1.31454 1.07520 0.91959 1.26020 0.96070 0.96274 1.01699 1.70113 1.03603 1.42778 1.41138 0.85397 0.78486 0.78304 0.78856 1.18343 1.20375 1.20513 1.18111 0.93273 0.91503 0.86827 1.20732 1.07017 0.94515 0.98395 1.21044 0.99876 1.01023 0.90840 1.17682 1.09597 0.93293 0.81008 1.91421 1.93423 1.82265 1.46616 1.21094 0.98571 0.92564 0.99884 1.20739 1.07807 1.01573 0.89589 0.92978 0.92734 0.90147 0.90478 0.89749 0.90268 0.89368 0.92999 0.93708 0.92772 0.92455 0.99394 0.99665 0.92847 0.84945 0.84248 0.83056 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.24 71.98 0.74 -1.51 16 2 C 0.11 1.85 5.88 86.38 0.51 2.36 16 3 N -0.62 -13.61 2.61 -697.21 -1.82 -15.43 16 4 C 0.13 3.11 5.17 86.38 0.45 3.55 16 5 C -0.12 -3.90 5.54 30.60 0.17 -3.73 16 6 C -0.10 -3.73 5.15 30.60 0.16 -3.57 16 7 C 0.02 1.19 4.97 29.85 0.15 1.33 16 8 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 9 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 10 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 11 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 12 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 13 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 C 0.21 4.80 6.55 38.17 0.25 5.05 16 17 C -0.18 -4.57 9.21 22.40 0.21 -4.36 16 18 C -0.11 -2.64 10.02 22.30 0.22 -2.42 16 19 C 0.01 0.13 7.30 22.38 0.16 0.29 16 20 F -0.16 -4.10 17.27 44.97 0.78 -3.33 16 21 C -0.10 -2.10 10.02 22.29 0.22 -1.87 16 22 C -0.17 -3.50 9.21 22.39 0.21 -3.29 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 1.32 8.07 -2.39 -0.02 1.30 16 27 H 0.08 1.23 6.20 -2.39 -0.01 1.22 16 28 H 0.08 1.83 6.19 -2.39 -0.01 1.82 16 29 H 0.09 1.87 8.07 -2.39 -0.02 1.86 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.13 3.26 6.13 -2.91 -0.02 3.24 16 38 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.15 2.28 6.14 -2.91 -0.02 2.27 16 Total: -1.00 -66.10 334.09 6.40 -59.69 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.00 Total: 8.71 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 4.13 Total: -38.58 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.54 Total: -72.84 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.10 6.40 -59.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385278297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.005 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds