Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 N 1.46910 * 109.47081 * 119.99147 * 2 1 3 5 5 C 1.46900 * 111.00048 * 275.00153 * 4 2 1 6 6 C 1.53003 * 109.46881 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46975 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46975 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46853 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00471 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99835 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00092 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99887 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47296 * 90.00216 * 13 11 9 15 15 H 1.48505 * 109.47025 * 209.99878 * 13 11 9 16 16 H 1.48499 * 109.47321 * 329.99971 * 13 11 9 17 17 C 1.50696 * 109.47545 * 239.99485 * 2 1 3 18 18 C 1.38265 * 119.99038 * 99.99812 * 17 2 1 19 19 C 1.38217 * 120.05343 * 179.72464 * 18 17 2 20 20 C 1.38216 * 120.02581 * 0.02562 * 19 18 17 21 21 C 1.38443 * 119.97557 * 359.97438 * 20 19 18 22 22 F 1.35099 * 120.02540 * 180.02562 * 21 20 19 23 23 C 1.38181 * 119.98309 * 279.72741 * 17 2 1 24 24 H 1.09002 * 109.47254 * 300.00655 * 1 2 3 25 25 H 1.08994 * 109.46795 * 60.00670 * 1 2 3 26 26 H 1.09003 * 109.46713 * 180.02562 * 1 2 3 27 27 H 1.00896 * 110.99798 * 38.95532 * 4 2 1 28 28 H 1.08998 * 109.46989 * 299.99842 * 5 4 2 29 29 H 1.08997 * 109.46794 * 60.00007 * 5 4 2 30 30 H 1.08998 * 109.47358 * 299.99833 * 6 5 4 31 31 H 1.09005 * 109.46676 * 60.00209 * 6 5 4 32 32 H 1.09002 * 109.47407 * 300.00340 * 7 6 5 33 33 H 1.09003 * 109.47106 * 60.00050 * 7 6 5 34 34 H 1.08998 * 109.47162 * 299.99757 * 8 7 6 35 35 H 1.08997 * 109.47420 * 60.00411 * 8 7 6 36 36 H 0.97000 * 120.00318 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.96984 * 359.74582 * 18 17 2 38 38 H 1.08000 * 119.99075 * 180.02562 * 19 18 17 39 39 H 1.08005 * 120.01835 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.01438 * 0.29295 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0824 0.2229 2.3469 6 6 2.5950 -0.5328 3.5746 7 6 2.6610 0.4206 4.7695 8 6 3.1741 -0.3349 5.9969 9 6 3.2385 0.6040 7.1739 10 1 2.9434 1.6364 7.0580 11 6 3.6742 0.1450 8.3990 12 7 4.0332 -1.1123 8.5403 13 14 3.7547 1.3090 9.8577 14 1 2.4608 1.2803 10.5859 15 1 4.8460 0.8836 10.7708 16 1 4.0214 2.6882 9.3764 17 6 2.0324 -0.7105 -1.2303 18 6 2.4589 0.0196 -2.3243 19 6 2.9253 -0.6306 -3.4513 20 6 2.9654 -2.0117 -3.4861 21 6 2.5387 -2.7439 -2.3913 22 9 2.5779 -4.0939 -2.4240 23 6 2.0720 -2.0913 -1.2626 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.4496 -1.4977 1.4103 28 1 2.7588 1.0464 2.1182 29 1 1.0870 0.6166 2.5525 30 1 1.9183 -1.3561 3.8033 31 1 3.5904 -0.9268 3.3693 32 1 3.3379 1.2437 4.5406 33 1 1.6658 0.8151 4.9749 34 1 2.4975 -1.1582 6.2260 35 1 4.1694 -0.7290 5.7913 36 1 4.3393 -1.4353 9.4022 37 1 2.4278 1.0988 -2.2980 38 1 3.2585 -0.0593 -4.3051 39 1 3.3303 -2.5197 -4.3666 40 1 1.7385 -2.6615 -0.4081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385350193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = -49.393721 kcal Electronic energy + Delta-G solvation = -18851.041802 eV Core-core repulsion = 15771.880518 eV Total energy + Delta-G solvation = -3079.161284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.03007 -39.65960 -37.10589 -34.66474 -32.73385 -31.16322 -30.77287 -29.32950 -27.52832 -24.64621 -23.82369 -22.76190 -21.36516 -20.97260 -19.93920 -17.61361 -16.53297 -16.33473 -16.19475 -15.75662 -15.56561 -14.89213 -14.78549 -14.40808 -14.12539 -13.77904 -13.51274 -13.14372 -12.64564 -12.59710 -12.28618 -12.22284 -12.01331 -11.66525 -11.54194 -11.37055 -11.02024 -10.97539 -10.57866 -10.48492 -10.41653 -9.62321 -9.27173 -9.14696 -8.99105 -8.87988 -8.43920 -8.31571 -5.96720 -3.98995 0.95060 1.02361 3.33256 3.35709 3.39386 3.42829 4.03977 4.07497 4.45837 4.48819 4.57338 4.81123 4.88097 4.98640 5.01931 5.19480 5.33410 5.38733 5.39857 5.49645 5.58071 5.67279 5.82277 5.83171 5.92091 5.92826 6.04798 6.16036 6.19996 6.33942 6.51128 6.68880 6.82849 6.95590 7.01863 7.22545 7.33479 7.72243 7.88175 8.04426 8.47078 9.08613 9.64792 11.14654 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034520 B = 0.002718 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.927932 B =10298.131296 C =10697.397842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 H 0.090 0.910 4 N -0.684 5.684 5 C 0.060 3.940 6 C -0.116 4.116 7 C -0.108 4.108 8 C 0.021 3.979 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.035 4.035 18 C -0.128 4.128 19 C -0.092 4.092 20 C -0.162 4.162 21 C 0.096 3.904 22 F -0.142 7.142 23 C -0.132 4.132 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.341 0.659 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 0.828 -24.987 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.009 3.991 3 H 0.108 0.892 4 N -0.314 5.314 5 C -0.068 4.068 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.016 4.016 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.035 4.035 18 C -0.147 4.147 19 C -0.110 4.110 20 C -0.181 4.181 21 C 0.077 3.923 22 F -0.120 7.120 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.159 0.841 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.205 0.737 -25.002 25.549 hybrid contribution -0.816 0.348 1.087 1.403 sum -6.021 1.085 -23.915 24.685 Atomic orbital electron populations 1.22493 0.95983 1.02622 1.02655 1.20488 0.92844 0.97547 0.88254 0.89150 1.60626 1.57010 1.10027 1.03774 1.22116 0.99309 0.95410 0.89994 1.21644 1.01446 0.98764 0.93560 1.21584 1.00098 0.97828 0.95144 1.19089 0.96265 0.95369 0.90895 1.21291 1.43481 0.96435 0.94659 0.92783 1.25038 0.95509 0.95095 0.98910 1.69966 1.44800 1.14409 1.24374 0.86612 0.77646 0.81231 0.82611 1.20710 1.21224 1.19904 1.19692 0.96353 0.92663 0.94827 1.21073 1.00144 1.00246 0.93203 1.20938 0.98382 0.93357 0.98284 1.21114 1.03776 0.94863 0.98346 1.17735 1.01877 0.76857 0.95811 1.91500 1.94373 1.29254 1.96915 1.20928 1.02065 0.94883 0.97225 0.91809 0.91841 0.92146 0.84059 0.91154 0.95304 0.92734 0.91611 0.93440 0.93688 0.96755 0.96602 0.93040 0.85483 0.85153 0.85063 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.14 37.16 0.34 -1.17 16 2 C 0.12 1.16 2.79 -68.86 -0.19 0.97 16 3 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 4 N -0.68 -8.07 5.70 -107.95 -0.62 -8.69 16 5 C 0.06 0.81 5.48 -3.82 -0.02 0.79 16 6 C -0.12 -1.96 5.47 -26.73 -0.15 -2.10 16 7 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 8 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 9 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 13 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 17 C -0.03 -0.34 4.96 -104.63 -0.52 -0.86 16 18 C -0.13 -1.10 9.67 -39.58 -0.38 -1.48 16 19 C -0.09 -0.72 10.04 -39.60 -0.40 -1.12 16 20 C -0.16 -1.46 10.03 -39.51 -0.40 -1.86 16 21 C 0.10 1.05 7.30 -39.42 -0.29 0.76 16 22 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 23 C -0.13 -1.41 9.30 -39.51 -0.37 -1.78 16 24 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.34 3.79 7.82 -39.29 -0.31 3.48 16 28 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 29 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.13 0.84 8.04 -52.49 -0.42 0.42 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.13 1.39 7.24 -52.49 -0.38 1.01 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -31.02 336.98 -9.31 -40.33 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.47 Total: -1.67 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.06 Total: -23.62 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.12 Total: -35.37 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.02 -9.31 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385350193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.062 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds