Wall clock time and date at job start Mon Mar 30 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 N 1.46910 * 109.47081 * 119.99147 * 2 1 3 5 5 C 1.46900 * 111.00048 * 275.00153 * 4 2 1 6 6 C 1.53003 * 109.46881 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46975 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46975 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46853 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00471 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99835 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00092 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99887 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47296 * 90.00216 * 13 11 9 15 15 H 1.48505 * 109.47025 * 209.99878 * 13 11 9 16 16 H 1.48499 * 109.47321 * 329.99971 * 13 11 9 17 17 C 1.50696 * 109.47545 * 239.99485 * 2 1 3 18 18 C 1.38265 * 119.99038 * 99.99812 * 17 2 1 19 19 C 1.38217 * 120.05343 * 179.72464 * 18 17 2 20 20 C 1.38216 * 120.02581 * 0.02562 * 19 18 17 21 21 C 1.38443 * 119.97557 * 359.97438 * 20 19 18 22 22 F 1.35099 * 120.02540 * 180.02562 * 21 20 19 23 23 C 1.38181 * 119.98309 * 279.72741 * 17 2 1 24 24 H 1.09002 * 109.47254 * 300.00655 * 1 2 3 25 25 H 1.08994 * 109.46795 * 60.00670 * 1 2 3 26 26 H 1.09003 * 109.46713 * 180.02562 * 1 2 3 27 27 H 1.00896 * 110.99798 * 38.95532 * 4 2 1 28 28 H 1.08998 * 109.46989 * 299.99842 * 5 4 2 29 29 H 1.08997 * 109.46794 * 60.00007 * 5 4 2 30 30 H 1.08998 * 109.47358 * 299.99833 * 6 5 4 31 31 H 1.09005 * 109.46676 * 60.00209 * 6 5 4 32 32 H 1.09002 * 109.47407 * 300.00340 * 7 6 5 33 33 H 1.09003 * 109.47106 * 60.00050 * 7 6 5 34 34 H 1.08998 * 109.47162 * 299.99757 * 8 7 6 35 35 H 1.08997 * 109.47420 * 60.00411 * 8 7 6 36 36 H 0.97000 * 120.00318 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.96984 * 359.74582 * 18 17 2 38 38 H 1.08000 * 119.99075 * 180.02562 * 19 18 17 39 39 H 1.08005 * 120.01835 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.01438 * 0.29295 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0824 0.2229 2.3469 6 6 2.5950 -0.5328 3.5746 7 6 2.6610 0.4206 4.7695 8 6 3.1741 -0.3349 5.9969 9 6 3.2385 0.6040 7.1739 10 1 2.9434 1.6364 7.0580 11 6 3.6742 0.1450 8.3990 12 7 4.0332 -1.1123 8.5403 13 14 3.7547 1.3090 9.8577 14 1 2.4608 1.2803 10.5859 15 1 4.8460 0.8836 10.7708 16 1 4.0214 2.6882 9.3764 17 6 2.0324 -0.7105 -1.2303 18 6 2.4589 0.0196 -2.3243 19 6 2.9253 -0.6306 -3.4513 20 6 2.9654 -2.0117 -3.4861 21 6 2.5387 -2.7439 -2.3913 22 9 2.5779 -4.0939 -2.4240 23 6 2.0720 -2.0913 -1.2626 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.4496 -1.4977 1.4103 28 1 2.7588 1.0464 2.1182 29 1 1.0870 0.6166 2.5525 30 1 1.9183 -1.3561 3.8033 31 1 3.5904 -0.9268 3.3693 32 1 3.3379 1.2437 4.5406 33 1 1.6658 0.8151 4.9749 34 1 2.4975 -1.1582 6.2260 35 1 4.1694 -0.7290 5.7913 36 1 4.3393 -1.4353 9.4022 37 1 2.4278 1.0988 -2.2980 38 1 3.2585 -0.0593 -4.3051 39 1 3.3303 -2.5197 -4.3666 40 1 1.7385 -2.6615 -0.4081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385350193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:03 Heat of formation + Delta-G solvation = -66.326713 kcal Electronic energy + Delta-G solvation = -18851.776072 eV Core-core repulsion = 15771.880518 eV Total energy + Delta-G solvation = -3079.895554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.86914 -40.38355 -38.08226 -36.26270 -34.50588 -32.46694 -31.47832 -30.32450 -28.96209 -26.19789 -24.74736 -23.67928 -22.72643 -21.98574 -21.38491 -18.54477 -18.27431 -17.28588 -17.03442 -16.74271 -16.57243 -16.50988 -15.89102 -15.69295 -15.04160 -14.66011 -14.47702 -14.35570 -13.94360 -13.86343 -13.60533 -13.21003 -13.04240 -12.93535 -12.79556 -12.67547 -12.35012 -12.19480 -12.09851 -12.09472 -11.77999 -11.37005 -11.29797 -10.97763 -10.55506 -9.85756 -9.62479 -9.33441 -8.19881 -6.31537 0.23454 0.32872 1.39513 1.41352 1.52546 2.40918 2.65158 3.12869 3.18858 3.31078 3.74615 3.87739 4.11017 4.14980 4.17640 4.28163 4.32922 4.38779 4.52162 4.53891 4.64110 4.75105 4.83749 4.89352 4.95025 5.00615 5.14841 5.20973 5.21741 5.26595 5.28683 5.37185 5.40942 5.55684 5.58672 5.78645 5.87337 5.99173 6.12211 6.25803 6.41789 6.86519 7.37928 8.92109 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034520 B = 0.002718 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.927932 B =10298.131296 C =10697.397842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 H 0.098 0.902 4 N -0.693 5.693 5 C 0.074 3.926 6 C -0.107 4.107 7 C -0.096 4.096 8 C 0.022 3.978 9 C -0.544 4.544 10 H 0.061 0.939 11 C -0.004 4.004 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.262 1.262 17 C -0.045 4.045 18 C -0.128 4.128 19 C -0.087 4.087 20 C -0.164 4.164 21 C 0.070 3.930 22 F -0.155 7.155 23 C -0.147 4.147 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.343 0.657 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.052 0.948 34 H -0.012 1.012 35 H -0.013 1.013 36 H 0.263 0.737 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.364 3.029 -26.114 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.116 0.884 4 N -0.324 5.324 5 C -0.055 4.055 6 C -0.145 4.145 7 C -0.134 4.134 8 C -0.015 4.015 9 C -0.582 4.582 10 H 0.079 0.921 11 C -0.202 4.202 12 N -0.576 5.576 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.186 1.186 17 C -0.046 4.046 18 C -0.146 4.146 19 C -0.105 4.105 20 C -0.183 4.183 21 C 0.051 3.949 22 F -0.134 7.134 23 C -0.166 4.166 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.162 0.838 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.007 0.993 35 H 0.005 0.995 36 H 0.072 0.928 37 H 0.168 0.832 38 H 0.180 0.820 39 H 0.166 0.834 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.635 2.942 -26.150 26.912 hybrid contribution -0.666 -0.371 1.389 1.584 sum -6.301 2.572 -24.762 25.680 Atomic orbital electron populations 1.22433 0.94959 1.02629 1.03183 1.20518 0.93639 0.97522 0.87100 0.88396 1.60555 1.57861 1.10091 1.03907 1.21865 0.99676 0.95012 0.88961 1.21473 1.00924 0.98208 0.93902 1.21386 1.00083 0.97876 0.94047 1.19027 0.94306 0.94934 0.93239 1.21759 1.43565 0.97125 0.95782 0.92060 1.26044 0.94871 0.96890 1.02349 1.70108 1.45585 1.16539 1.25380 0.85424 0.77986 0.79120 0.78381 1.19666 1.20768 1.18587 1.19785 0.97006 0.92324 0.95495 1.21409 0.99000 1.01466 0.92729 1.21324 0.97191 0.92973 0.99029 1.21407 1.03085 0.95580 0.98223 1.18040 1.03450 0.76554 0.96884 1.91459 1.94649 1.30231 1.97041 1.20981 1.02859 0.95534 0.97225 0.91978 0.90525 0.92448 0.83825 0.90794 0.94226 0.92993 0.92994 0.93004 0.92911 0.99330 0.99453 0.92791 0.83168 0.82024 0.83430 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.14 71.98 0.66 -1.95 16 2 C 0.12 2.16 2.79 44.17 0.12 2.28 16 3 H 0.10 1.60 7.66 -2.39 -0.02 1.58 16 4 N -0.69 -15.70 5.70 -495.44 -2.82 -18.53 16 5 C 0.07 1.87 5.48 86.30 0.47 2.35 16 6 C -0.11 -3.60 5.47 30.60 0.17 -3.44 16 7 C -0.10 -3.93 5.15 30.59 0.16 -3.78 16 8 C 0.02 1.20 4.97 29.85 0.15 1.35 16 9 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 10 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 11 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 12 N -0.94 -58.35 13.29 21.45 0.28 -58.07 16 13 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 17 C -0.05 -0.83 4.96 -19.87 -0.10 -0.93 16 18 C -0.13 -1.84 9.67 22.27 0.22 -1.63 16 19 C -0.09 -1.14 10.04 22.26 0.22 -0.91 16 20 C -0.16 -2.71 10.03 22.31 0.22 -2.48 16 21 C 0.07 1.51 7.30 22.38 0.16 1.67 16 22 F -0.15 -3.78 17.27 44.97 0.78 -3.01 16 23 C -0.15 -3.13 9.30 22.31 0.21 -2.92 16 24 H 0.06 0.96 7.45 -2.39 -0.02 0.94 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 27 H 0.34 7.51 7.82 -89.70 -0.70 6.81 16 28 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 29 H 0.04 0.94 7.44 -2.39 -0.02 0.92 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.15 1.43 8.04 -2.91 -0.02 1.41 16 38 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.13 2.75 7.24 -2.91 -0.02 2.73 16 Total: -1.00 -67.54 336.98 3.93 -63.61 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.31 Total: 10.77 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 3.36 Total: -41.63 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -2.54 Total: -76.59 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.54 3.93 -63.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385350193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.713 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds