Wall clock time and date at job start Mon Mar 30 2020 08:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47156 * 145.04254 * 5 4 3 7 7 C 1.53002 * 109.47090 * 265.04331 * 5 4 3 8 8 N 1.46901 * 109.47198 * 25.04647 * 5 4 3 9 9 C 1.46893 * 111.00424 * 154.99875 * 8 5 4 10 10 C 1.52999 * 109.47447 * 179.97438 * 9 8 5 11 11 C 1.52998 * 109.47233 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47233 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47166 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00224 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00181 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99898 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00263 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47310 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47155 * 119.99966 * 17 15 13 20 20 H 1.48502 * 109.47156 * 239.99816 * 17 15 13 21 21 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 22 22 C 1.50695 * 125.79226 * 179.97438 * 21 4 3 23 23 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 26 26 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 27 27 H 1.08007 * 126.58064 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.46760 * 60.00070 * 7 5 4 29 29 H 1.09002 * 109.46694 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.46984 * 299.99464 * 7 5 4 31 31 H 1.00904 * 110.99630 * 278.95423 * 8 5 4 32 32 H 1.09004 * 109.47191 * 300.00430 * 9 8 5 33 33 H 1.09001 * 109.47012 * 59.99651 * 9 8 5 34 34 H 1.08996 * 109.47280 * 300.00090 * 10 9 8 35 35 H 1.09001 * 109.46450 * 60.00201 * 10 9 8 36 36 H 1.08996 * 109.47350 * 300.00401 * 11 10 9 37 37 H 1.09001 * 109.46830 * 60.00320 * 11 10 9 38 38 H 1.08998 * 109.47233 * 300.00986 * 12 11 10 39 39 H 1.09001 * 109.46952 * 60.00394 * 12 11 10 40 40 H 0.96996 * 120.00198 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47797 * 179.97438 * 22 21 4 42 42 H 1.09006 * 109.47078 * 299.99936 * 22 21 4 43 43 H 1.09005 * 109.47246 * 59.99506 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6498 0.9964 0.5871 7 6 5.3635 1.6707 -1.4388 8 7 4.5670 2.7967 0.5849 9 6 5.7748 3.4183 1.1440 10 6 5.4169 4.7798 1.7435 11 6 6.6747 5.4269 2.3264 12 6 6.3167 6.7881 2.9264 13 6 7.5557 7.4258 3.5000 14 1 8.5039 6.9119 3.4420 15 6 7.4790 8.6654 4.0988 16 7 6.3245 9.2914 4.1690 17 14 9.0150 9.4562 4.8092 18 1 10.1767 8.5542 4.6032 19 1 9.2659 10.7510 4.1267 20 1 8.8235 9.6917 6.2628 21 6 3.5814 -0.7122 -0.0015 22 6 4.7705 -1.6379 -0.0030 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5135 -0.8901 27 1 1.9665 2.1205 -0.0004 28 1 4.5869 2.1593 -2.0272 29 1 6.2623 2.2872 -1.4392 30 1 5.5907 0.6974 -1.8737 31 1 4.1292 3.4024 -0.0930 32 1 6.1875 2.7756 1.9217 33 1 6.5134 3.5525 0.3538 34 1 5.0045 5.4222 0.9655 35 1 4.6781 4.6458 2.5336 36 1 7.0868 4.7844 3.1044 37 1 7.4138 5.5608 1.5365 38 1 5.9043 7.4309 2.1487 39 1 5.5778 6.6539 3.7164 40 1 6.2706 10.1636 4.5900 41 1 4.4260 -2.6720 -0.0030 42 1 5.3723 -1.4549 -0.8933 43 1 5.3735 -1.4561 0.8867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385388626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:29:52 Heat of formation + Delta-G solvation = -21.635058 kcal Electronic energy + Delta-G solvation = -19400.025307 eV Core-core repulsion = 16445.528034 eV Total energy + Delta-G solvation = -2954.497273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.66392 -37.57690 -34.88551 -33.18893 -33.06358 -31.93030 -29.94759 -29.52611 -27.45394 -25.05018 -24.33247 -22.90394 -21.56625 -20.81577 -20.03035 -19.12580 -16.56506 -16.35273 -16.15335 -15.51958 -14.96117 -14.68551 -14.42068 -14.04731 -13.61927 -13.52244 -13.41613 -13.12346 -12.88011 -12.85240 -12.53994 -12.46326 -12.27447 -12.02012 -11.82090 -11.58998 -11.24589 -11.15676 -10.99066 -10.55052 -10.44326 -10.39828 -9.60368 -9.56773 -9.22637 -8.96514 -8.36910 -8.30576 -8.15857 -5.95798 -3.97828 1.64984 2.57525 2.84762 3.33088 3.40302 3.44644 4.19038 4.49651 4.54229 4.72525 4.86890 4.99284 5.08440 5.14513 5.21721 5.25303 5.26508 5.38591 5.39717 5.43313 5.50794 5.57147 5.61526 5.64426 5.87803 5.90244 5.96938 6.09190 6.16073 6.20889 6.33443 6.53896 6.55682 6.86623 7.00487 7.08966 7.16714 7.28573 7.47072 7.73969 7.89976 8.05729 8.48598 9.10014 9.65924 11.15631 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.002741 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.829648 B =10214.084339 C =10686.467610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.180 4.180 4 C -0.151 4.151 5 C 0.153 3.847 6 H 0.082 0.918 7 C -0.177 4.177 8 N -0.681 5.681 9 C 0.060 3.940 10 C -0.115 4.115 11 C -0.108 4.108 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.027 4.027 22 C -0.071 4.071 23 O -0.178 6.178 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.340 0.660 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.948 -21.504 -11.755 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.199 4.199 4 C -0.153 4.153 5 C 0.043 3.957 6 H 0.101 0.899 7 C -0.235 4.235 8 N -0.311 5.311 9 C -0.068 4.068 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.077 4.077 22 C -0.127 4.127 23 O -0.076 6.076 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.323 -21.897 -11.080 25.913 hybrid contribution 1.272 1.053 -0.358 1.689 sum -7.051 -20.844 -11.438 24.799 Atomic orbital electron populations 1.20247 0.85365 1.03541 1.03493 1.22326 0.93815 0.84202 1.07671 1.21333 0.91879 0.99353 1.07329 1.20071 0.95630 0.92439 1.07189 1.19776 0.92439 0.89959 0.93575 0.89944 1.22458 1.01476 1.02192 0.97421 1.60502 1.27625 1.03770 1.39252 1.22101 0.90260 0.96535 0.97946 1.21630 0.99813 0.93631 1.00243 1.21583 0.95124 0.99049 0.98902 1.19094 0.96689 0.90187 0.95674 1.21333 0.94941 1.02542 1.36894 0.92735 1.25042 0.95933 0.97343 0.96285 1.69982 1.24035 1.14810 1.44754 0.86558 0.83501 0.79266 0.78802 1.19777 1.21051 1.21029 1.22028 0.83282 0.94083 1.08261 1.20262 0.91538 0.97531 1.03379 1.83926 1.16194 1.35066 1.72365 0.90991 0.89773 0.89957 0.83478 0.92298 0.92148 0.92236 0.84170 0.91339 0.95499 0.92785 0.91679 0.93471 0.93707 0.96753 0.96613 0.93120 0.90860 0.90034 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.00 0.38 -0.14 16 2 C -0.03 -0.35 7.32 -35.63 -0.26 -0.61 16 3 C -0.18 -2.17 10.26 -39.70 -0.41 -2.58 16 4 C -0.15 -1.83 5.26 -104.74 -0.55 -2.38 16 5 C 0.15 1.75 2.79 -68.86 -0.19 1.55 16 6 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 7 C -0.18 -1.74 9.14 37.16 0.34 -1.40 16 8 N -0.68 -8.88 5.83 -107.95 -0.63 -9.51 16 9 C 0.06 0.86 5.48 -3.83 -0.02 0.84 16 10 C -0.12 -2.01 5.47 -26.73 -0.15 -2.15 16 11 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C -0.03 -0.30 7.32 -35.63 -0.26 -0.56 16 22 C -0.07 -0.55 10.03 36.00 0.36 -0.19 16 23 O -0.18 -2.18 10.65 5.71 0.06 -2.12 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 30 H 0.06 0.52 8.05 -51.93 -0.42 0.10 16 31 H 0.34 4.20 8.47 -39.29 -0.33 3.86 16 32 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -32.21 355.81 -8.74 -40.95 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.80 Total: -1.42 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.45 Total: -23.49 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.28 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: 0.06 Total: -2.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -8.74 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385388626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.317 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds