Wall clock time and date at job start Mon Mar 30 2020 08:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47156 * 145.04254 * 5 4 3 7 7 C 1.53002 * 109.47090 * 265.04331 * 5 4 3 8 8 N 1.46901 * 109.47198 * 25.04647 * 5 4 3 9 9 C 1.46893 * 111.00424 * 154.99875 * 8 5 4 10 10 C 1.52999 * 109.47447 * 179.97438 * 9 8 5 11 11 C 1.52998 * 109.47233 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47233 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47166 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00224 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00181 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99898 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00263 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47310 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47155 * 119.99966 * 17 15 13 20 20 H 1.48502 * 109.47156 * 239.99816 * 17 15 13 21 21 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 22 22 C 1.50695 * 125.79226 * 179.97438 * 21 4 3 23 23 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 26 26 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 27 27 H 1.08007 * 126.58064 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.46760 * 60.00070 * 7 5 4 29 29 H 1.09002 * 109.46694 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.46984 * 299.99464 * 7 5 4 31 31 H 1.00904 * 110.99630 * 278.95423 * 8 5 4 32 32 H 1.09004 * 109.47191 * 300.00430 * 9 8 5 33 33 H 1.09001 * 109.47012 * 59.99651 * 9 8 5 34 34 H 1.08996 * 109.47280 * 300.00090 * 10 9 8 35 35 H 1.09001 * 109.46450 * 60.00201 * 10 9 8 36 36 H 1.08996 * 109.47350 * 300.00401 * 11 10 9 37 37 H 1.09001 * 109.46830 * 60.00320 * 11 10 9 38 38 H 1.08998 * 109.47233 * 300.00986 * 12 11 10 39 39 H 1.09001 * 109.46952 * 60.00394 * 12 11 10 40 40 H 0.96996 * 120.00198 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47797 * 179.97438 * 22 21 4 42 42 H 1.09006 * 109.47078 * 299.99936 * 22 21 4 43 43 H 1.09005 * 109.47246 * 59.99506 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6498 0.9964 0.5871 7 6 5.3635 1.6707 -1.4388 8 7 4.5670 2.7967 0.5849 9 6 5.7748 3.4183 1.1440 10 6 5.4169 4.7798 1.7435 11 6 6.6747 5.4269 2.3264 12 6 6.3167 6.7881 2.9264 13 6 7.5557 7.4258 3.5000 14 1 8.5039 6.9119 3.4420 15 6 7.4790 8.6654 4.0988 16 7 6.3245 9.2914 4.1690 17 14 9.0150 9.4562 4.8092 18 1 10.1767 8.5542 4.6032 19 1 9.2659 10.7510 4.1267 20 1 8.8235 9.6917 6.2628 21 6 3.5814 -0.7122 -0.0015 22 6 4.7705 -1.6379 -0.0030 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5135 -0.8901 27 1 1.9665 2.1205 -0.0004 28 1 4.5869 2.1593 -2.0272 29 1 6.2623 2.2872 -1.4392 30 1 5.5907 0.6974 -1.8737 31 1 4.1292 3.4024 -0.0930 32 1 6.1875 2.7756 1.9217 33 1 6.5134 3.5525 0.3538 34 1 5.0045 5.4222 0.9655 35 1 4.6781 4.6458 2.5336 36 1 7.0868 4.7844 3.1044 37 1 7.4138 5.5608 1.5365 38 1 5.9043 7.4309 2.1487 39 1 5.5778 6.6539 3.7164 40 1 6.2706 10.1636 4.5900 41 1 4.4260 -2.6720 -0.0030 42 1 5.3723 -1.4549 -0.8933 43 1 5.3735 -1.4561 0.8867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385388626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:29:51 Heat of formation + Delta-G solvation = -40.136008 kcal Electronic energy + Delta-G solvation = -19400.827569 eV Core-core repulsion = 16445.528034 eV Total energy + Delta-G solvation = -2955.299535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.50937 -38.62485 -36.47875 -34.80098 -33.80913 -33.41839 -31.15920 -30.23249 -28.98823 -26.23631 -25.61754 -23.91762 -23.00095 -21.88407 -21.61544 -20.04020 -18.43048 -17.36568 -17.18302 -16.73936 -16.51189 -16.00694 -15.66350 -15.15867 -14.56985 -14.42231 -14.30514 -14.13306 -14.00200 -13.69580 -13.60582 -13.49869 -13.44392 -13.14893 -13.12694 -12.86937 -12.69573 -12.47190 -12.27360 -12.12752 -12.10355 -12.00455 -11.37815 -11.29678 -10.98872 -10.55947 -10.44080 -9.35855 -8.98997 -8.19953 -6.31425 0.82001 1.39528 1.40112 1.53633 1.70283 2.09010 2.40944 3.12765 3.17068 3.81253 3.90015 4.06487 4.15994 4.18656 4.33391 4.36584 4.42101 4.48150 4.56204 4.62804 4.67352 4.73244 4.76539 4.79945 4.86209 4.89006 4.93643 5.03044 5.07671 5.16382 5.23531 5.26925 5.31465 5.36968 5.44661 5.55820 5.70894 5.78500 5.87281 6.14492 6.26026 6.31856 6.46709 6.86520 7.37954 8.92242 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.002741 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.829648 B =10214.084339 C =10686.467610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.037 4.037 3 C -0.203 4.203 4 C -0.170 4.170 5 C 0.157 3.843 6 H 0.085 0.915 7 C -0.170 4.170 8 N -0.689 5.689 9 C 0.073 3.927 10 C -0.105 4.105 11 C -0.096 4.096 12 C 0.022 3.978 13 C -0.543 4.543 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.278 1.278 21 C -0.035 4.035 22 C -0.071 4.071 23 O -0.191 6.191 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.146 0.854 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.343 0.657 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.013 1.013 40 H 0.263 0.737 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 -22.627 -12.239 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.223 4.223 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.103 0.897 7 C -0.229 4.229 8 N -0.320 5.320 9 C -0.055 4.055 10 C -0.143 4.143 11 C -0.134 4.134 12 C -0.015 4.015 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.084 4.084 22 C -0.127 4.127 23 O -0.089 6.089 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.164 0.836 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.008 0.992 39 H 0.006 0.994 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.187 -23.038 -11.575 26.766 hybrid contribution 0.844 1.398 -0.209 1.646 sum -6.343 -21.640 -11.784 25.444 Atomic orbital electron populations 1.20398 0.83002 1.04581 1.04581 1.22963 0.95293 0.83768 1.06610 1.21495 0.92468 0.99691 1.08615 1.20240 0.95798 0.93043 1.08133 1.19774 0.92353 0.88775 0.94436 0.89680 1.22385 1.01228 1.02963 0.96298 1.60421 1.27059 1.04512 1.40019 1.21859 0.90948 0.94530 0.98203 1.21453 0.97657 0.95395 0.99793 1.21388 0.96885 0.96125 0.99007 1.19025 0.95329 0.92873 0.94239 1.21778 0.95823 1.03230 1.37294 0.92145 1.26039 0.99548 0.98008 0.96557 1.70117 1.26548 1.15365 1.45539 0.85372 0.79235 0.78304 0.77972 1.18479 1.20269 1.20352 1.22651 0.83775 0.94593 1.07411 1.20419 0.90410 0.97422 1.04446 1.83939 1.16799 1.35627 1.72536 0.89961 0.88989 0.88458 0.83595 0.92660 0.92022 0.90868 0.83842 0.91240 0.94376 0.92844 0.92993 0.93133 0.92937 0.99217 0.99415 0.92783 0.89812 0.88456 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.42 71.23 0.74 -0.20 16 2 C -0.04 -0.81 7.32 24.83 0.18 -0.63 16 3 C -0.20 -4.87 10.26 22.19 0.23 -4.64 16 4 C -0.17 -3.98 5.26 -19.94 -0.10 -4.09 16 5 C 0.16 3.37 2.79 44.17 0.12 3.49 16 6 H 0.09 1.78 7.68 -2.39 -0.02 1.76 16 7 C -0.17 -3.04 9.14 71.98 0.66 -2.39 16 8 N -0.69 -17.35 5.83 -495.45 -2.89 -20.24 16 9 C 0.07 2.01 5.48 86.30 0.47 2.49 16 10 C -0.10 -3.64 5.47 30.59 0.17 -3.47 16 11 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 12 C 0.02 1.23 4.97 29.85 0.15 1.37 16 13 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 16 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 17 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 C -0.03 -0.75 7.32 24.83 0.18 -0.57 16 22 C -0.07 -0.96 10.03 71.23 0.71 -0.25 16 23 O -0.19 -4.54 10.65 -2.47 -0.03 -4.57 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 29 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 30 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 31 H 0.34 8.25 8.47 -89.69 -0.76 7.49 16 32 H 0.07 1.91 8.06 -2.38 -0.02 1.89 16 33 H 0.04 0.97 7.44 -2.39 -0.02 0.95 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 1.01 8.05 -2.38 -0.02 0.99 16 43 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -69.35 355.81 3.96 -65.39 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.20 Total: 14.50 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 4.37 Total: -44.08 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -2.60 Total: -78.27 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.03 Total: -4.57 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.35 3.96 -65.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385388626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.251 kcal (2) G-P(sol) polarization free energy of solvation -69.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds