Wall clock time and date at job start Mon Mar 30 2020 08:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.43228 * 113.99898 * 179.97438 * 13 12 11 15 15 H 1.09706 * 110.56328 * 326.16663 * 14 13 12 16 16 C 1.59851 * 112.45956 * 200.22024 * 14 13 12 17 17 H 1.09510 * 117.49915 * 62.63267 * 16 14 13 18 18 C 1.57527 * 105.93534 * 195.41178 * 16 14 13 19 19 C 1.57330 * 109.46282 * 67.48393 * 18 16 14 20 20 H 1.09880 * 115.56113 * 126.55742 * 19 18 16 21 21 C 1.57968 * 106.44717 * 256.35038 * 19 18 16 22 22 N 1.52252 * 107.16387 * 96.13997 * 21 19 18 23 23 C 1.43377 * 91.53149 * 327.31283 * 22 21 19 24 24 H 1.08937 * 79.39778 * 330.47123 * 23 22 21 25 25 C 1.57989 * 102.44426 * 65.13455 * 23 22 21 26 26 H 1.09678 * 119.97963 * 54.12570 * 25 23 22 27 27 C 1.55819 * 101.88305 * 187.75982 * 25 23 22 28 28 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 34 34 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 35 35 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 36 36 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 37 37 H 1.08705 * 109.91753 * 306.31471 * 18 16 14 38 38 H 1.09218 * 109.08574 * 186.80910 * 18 16 14 39 39 H 1.09493 * 109.57685 * 213.80455 * 21 19 18 40 40 H 1.08529 * 111.56201 * 334.90299 * 21 19 18 41 41 H 1.00906 * 110.17535 * 215.63264 * 22 21 19 42 42 H 1.09170 * 111.77995 * 152.46534 * 27 25 23 43 43 H 1.08979 * 112.04812 * 277.83994 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1500 -0.0005 13 8 1.7602 -7.3876 -0.0005 14 6 2.6022 -8.5463 -0.0017 15 1 3.5185 -8.3562 -0.5742 16 6 1.8393 -9.8549 -0.5123 17 1 1.4664 -9.8535 -1.5420 18 6 2.7375 -11.0750 -0.0811 19 6 2.7390 -11.1965 1.4875 20 1 2.4620 -12.1819 1.8870 21 6 4.1283 -10.6276 1.9789 22 7 3.9056 -9.1729 2.3689 23 6 2.9011 -9.0155 1.3580 24 1 3.5309 -9.7761 0.8981 25 6 1.7627 -9.9921 1.8543 26 1 1.3623 -9.8953 2.8708 27 6 0.7724 -9.9680 0.6516 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6043 -0.8905 32 1 2.8721 -3.6042 0.8895 33 1 0.8541 -5.0446 0.8903 34 1 0.8535 -5.0451 -0.8897 35 1 3.1007 -6.0923 -0.8910 36 1 3.1020 -6.0922 0.8889 37 1 3.7514 -10.9363 -0.4478 38 1 2.3257 -11.9910 -0.5103 39 1 4.4585 -11.1802 2.8646 40 1 4.8866 -10.7046 1.2062 41 1 4.7165 -8.6210 2.1320 42 1 0.1994 -10.8945 0.5800 43 1 0.1125 -9.1013 0.6822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395365501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:56 Heat of formation + Delta-G solvation = 107.926176 kcal Electronic energy + Delta-G solvation = -20256.465795 eV Core-core repulsion = 17307.586718 eV Total energy + Delta-G solvation = -2948.879076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.37729 -37.56285 -35.04857 -34.31056 -32.27698 -30.21411 -28.73840 -28.31195 -26.59446 -24.94896 -24.29406 -21.66207 -20.64663 -20.40974 -19.91055 -19.00466 -16.79722 -16.60742 -16.17008 -15.99329 -15.27949 -14.98518 -14.60505 -14.43949 -13.66077 -13.46819 -13.13904 -12.62185 -12.44584 -12.05203 -11.73292 -11.68462 -11.50714 -11.28200 -11.24644 -11.02535 -10.92025 -10.75050 -10.71416 -10.60243 -10.48029 -10.31199 -10.00817 -9.60401 -9.27112 -9.17457 -9.01019 -8.36100 -8.29437 -5.94663 -3.97044 2.90582 3.36434 3.40267 3.41042 3.43684 4.00279 4.13482 4.18858 4.45538 4.49686 4.54442 4.65506 4.78281 4.84717 4.90218 5.10404 5.13896 5.29340 5.37091 5.40503 5.44118 5.46889 5.53062 5.63906 5.69366 5.81723 5.82769 5.85320 5.95826 6.13043 6.18134 6.21931 6.31850 6.54602 6.85170 6.98204 7.03159 7.15518 7.42057 7.73951 7.89963 8.06375 8.48551 9.10128 9.66518 11.16734 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043707 B = 0.003001 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.478105 B = 9328.232172 C = 9598.841659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.114 4.114 12 C 0.066 3.934 13 O -0.373 6.373 14 C 0.154 3.846 15 H 0.062 0.938 16 C -0.097 4.097 17 H 0.121 0.879 18 C -0.124 4.124 19 C -0.109 4.109 20 H 0.102 0.898 21 C -0.002 4.002 22 N -0.563 5.563 23 C -0.115 4.115 24 H 0.056 0.944 25 C -0.064 4.064 26 H 0.119 0.881 27 C -0.117 4.117 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.325 0.675 42 H 0.067 0.933 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 -25.583 0.274 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.152 4.152 12 C -0.010 4.010 13 O -0.292 6.292 14 C 0.094 3.906 15 H 0.080 0.920 16 C -0.116 4.116 17 H 0.139 0.861 18 C -0.161 4.161 19 C -0.128 4.128 20 H 0.120 0.880 21 C -0.131 4.131 22 N -0.188 5.188 23 C -0.225 4.225 24 H 0.073 0.927 25 C -0.083 4.083 26 H 0.137 0.863 27 C -0.154 4.154 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.638 -25.547 1.027 26.182 hybrid contribution 1.620 0.856 -0.947 2.063 sum 7.258 -24.691 0.080 25.736 Atomic orbital electron populations 1.69960 1.06040 1.26646 1.50882 1.25032 0.94851 0.99216 0.95416 0.86662 0.79578 0.83202 0.78570 1.20291 1.21295 1.20261 1.21244 0.92977 0.91199 1.50531 0.92808 1.19083 0.93990 0.91140 0.97323 1.21575 0.99182 0.93556 1.00199 1.21619 0.98061 0.92800 1.02722 1.22679 0.95459 0.83583 0.99308 1.87959 1.33780 1.13036 1.94431 1.22441 0.92543 0.86865 0.88734 0.92046 1.25070 0.96870 0.90448 0.99237 0.86125 1.23492 0.99475 0.98185 0.94949 1.25514 0.94041 0.99185 0.94039 0.88031 1.24925 0.96343 0.92163 0.99706 1.66954 1.09004 1.01942 1.40861 1.24090 0.95386 1.08400 0.94619 0.92690 1.24512 0.92518 0.92683 0.98586 0.86330 1.23418 0.96750 1.02170 0.93080 0.92975 0.96556 0.96503 0.93475 0.93361 0.91598 0.91797 0.94054 0.93659 0.92188 0.91019 0.90503 0.92568 0.86196 0.91405 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.11 -2.10 5.58 -26.73 -0.15 -2.24 16 12 C 0.07 1.02 5.83 37.16 0.22 1.24 16 13 O -0.37 -5.58 9.43 -35.23 -0.33 -5.91 16 14 C 0.15 1.81 3.05 -25.79 -0.08 1.73 16 15 H 0.06 0.66 7.96 -51.53 -0.41 0.25 16 16 C -0.10 -0.90 5.53 -81.38 -0.45 -1.35 16 17 H 0.12 0.98 8.18 -51.64 -0.42 0.56 16 18 C -0.12 -0.92 5.33 -21.91 -0.12 -1.04 16 19 C -0.11 -0.88 5.01 -82.01 -0.41 -1.29 16 20 H 0.10 0.67 8.22 -51.43 -0.42 0.25 16 21 C 0.00 -0.02 6.54 1.96 0.01 0.00 16 22 N -0.56 -6.19 8.27 -154.77 -1.28 -7.47 16 23 C -0.12 -1.33 5.64 -69.76 -0.39 -1.72 16 24 H 0.06 0.53 1.10 -169.54 -0.19 0.34 16 25 C -0.06 -0.67 5.75 -82.85 -0.48 -1.15 16 26 H 0.12 1.31 8.20 -51.54 -0.42 0.88 16 27 C -0.12 -1.16 6.23 -22.31 -0.14 -1.30 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.04 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.43 6.89 -52.09 -0.36 0.07 16 38 H 0.07 0.44 8.16 -51.81 -0.42 0.02 16 39 H 0.08 0.60 8.18 -51.65 -0.42 0.18 16 40 H 0.06 0.41 7.10 -52.19 -0.37 0.04 16 41 H 0.32 3.21 8.84 -39.29 -0.35 2.86 16 42 H 0.07 0.56 8.16 -51.83 -0.42 0.14 16 43 H 0.09 1.02 7.57 -51.94 -0.39 0.63 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -31.59 330.72 -11.11 -42.70 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.52 Total: -1.44 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.67 Total: -23.06 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: -0.54 Total: -34.30 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.33 Total: -5.91 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.59 -11.11 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395365501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.625 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds