Wall clock time and date at job start Mon Mar 30 2020 08:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.43228 * 113.99898 * 179.97438 * 13 12 11 15 15 H 1.09706 * 110.56328 * 326.16663 * 14 13 12 16 16 C 1.59851 * 112.45956 * 200.22024 * 14 13 12 17 17 H 1.09510 * 117.49915 * 62.63267 * 16 14 13 18 18 C 1.57527 * 105.93534 * 195.41178 * 16 14 13 19 19 C 1.57330 * 109.46282 * 67.48393 * 18 16 14 20 20 H 1.09880 * 115.56113 * 126.55742 * 19 18 16 21 21 C 1.57968 * 106.44717 * 256.35038 * 19 18 16 22 22 N 1.52252 * 107.16387 * 96.13997 * 21 19 18 23 23 C 1.43377 * 91.53149 * 327.31283 * 22 21 19 24 24 H 1.08937 * 79.39778 * 330.47123 * 23 22 21 25 25 C 1.57989 * 102.44426 * 65.13455 * 23 22 21 26 26 H 1.09678 * 119.97963 * 54.12570 * 25 23 22 27 27 C 1.55819 * 101.88305 * 187.75982 * 25 23 22 28 28 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 34 34 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 35 35 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 36 36 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 37 37 H 1.08705 * 109.91753 * 306.31471 * 18 16 14 38 38 H 1.09218 * 109.08574 * 186.80910 * 18 16 14 39 39 H 1.09493 * 109.57685 * 213.80455 * 21 19 18 40 40 H 1.08529 * 111.56201 * 334.90299 * 21 19 18 41 41 H 1.00906 * 110.17535 * 215.63264 * 22 21 19 42 42 H 1.09170 * 111.77995 * 152.46534 * 27 25 23 43 43 H 1.08979 * 112.04812 * 277.83994 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1500 -0.0005 13 8 1.7602 -7.3876 -0.0005 14 6 2.6022 -8.5463 -0.0017 15 1 3.5185 -8.3562 -0.5742 16 6 1.8393 -9.8549 -0.5123 17 1 1.4664 -9.8535 -1.5420 18 6 2.7375 -11.0750 -0.0811 19 6 2.7390 -11.1965 1.4875 20 1 2.4620 -12.1819 1.8870 21 6 4.1283 -10.6276 1.9789 22 7 3.9056 -9.1729 2.3689 23 6 2.9011 -9.0155 1.3580 24 1 3.5309 -9.7761 0.8981 25 6 1.7627 -9.9921 1.8543 26 1 1.3623 -9.8953 2.8708 27 6 0.7724 -9.9680 0.6516 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6043 -0.8905 32 1 2.8721 -3.6042 0.8895 33 1 0.8541 -5.0446 0.8903 34 1 0.8535 -5.0451 -0.8897 35 1 3.1007 -6.0923 -0.8910 36 1 3.1020 -6.0922 0.8889 37 1 3.7514 -10.9363 -0.4478 38 1 2.3257 -11.9910 -0.5103 39 1 4.4585 -11.1802 2.8646 40 1 4.8866 -10.7046 1.2062 41 1 4.7165 -8.6210 2.1320 42 1 0.1994 -10.8945 0.5800 43 1 0.1125 -9.1013 0.6822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395365501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:56 Heat of formation + Delta-G solvation = 86.671498 kcal Electronic energy + Delta-G solvation = -20257.387467 eV Core-core repulsion = 17307.586718 eV Total energy + Delta-G solvation = -2949.800748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.10855 -38.70097 -36.44738 -35.54323 -34.25274 -31.22590 -30.10376 -29.28466 -27.42175 -26.58265 -25.22906 -23.36531 -21.92631 -21.18895 -21.12795 -19.74247 -18.43805 -17.71424 -17.52202 -16.91504 -16.49919 -16.31240 -15.97422 -15.43070 -14.88399 -14.73524 -14.38005 -13.86965 -13.66298 -13.60713 -13.07167 -12.98087 -12.68062 -12.48507 -12.41371 -12.35006 -12.14585 -12.06090 -11.86428 -11.64841 -11.49410 -11.42031 -11.33932 -11.29925 -11.13035 -10.90031 -10.55082 -10.09709 -9.12756 -8.19664 -6.31685 1.39787 1.43664 1.51598 2.15588 2.40266 2.50881 3.12928 3.29598 3.36555 3.51408 3.72271 3.79352 3.93744 4.05481 4.09019 4.13127 4.16503 4.24862 4.39040 4.42898 4.45914 4.60933 4.65556 4.68795 4.72158 4.85685 4.87991 4.94438 5.02785 5.11893 5.17264 5.18275 5.22732 5.24838 5.29003 5.32150 5.52547 5.55646 5.75099 5.85460 6.24070 6.25502 6.33564 6.85445 7.37613 8.92340 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043707 B = 0.003001 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.478105 B = 9328.232172 C = 9598.841659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.077 3.923 13 O -0.393 6.393 14 C 0.141 3.859 15 H 0.072 0.928 16 C -0.092 4.092 17 H 0.133 0.867 18 C -0.119 4.119 19 C -0.099 4.099 20 H 0.122 0.878 21 C -0.005 4.005 22 N -0.587 5.587 23 C -0.150 4.150 24 H 0.083 0.917 25 C -0.079 4.079 26 H 0.102 0.898 27 C -0.116 4.116 28 H 0.264 0.736 29 H -0.009 1.009 30 H -0.012 1.012 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.327 0.673 42 H 0.086 0.914 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 -27.038 -0.447 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.131 4.131 11 C -0.145 4.145 12 C 0.001 3.999 13 O -0.312 6.312 14 C 0.081 3.919 15 H 0.090 0.910 16 C -0.111 4.111 17 H 0.151 0.849 18 C -0.156 4.156 19 C -0.117 4.117 20 H 0.139 0.861 21 C -0.134 4.134 22 N -0.212 5.212 23 C -0.259 4.259 24 H 0.101 0.899 25 C -0.098 4.098 26 H 0.120 0.880 27 C -0.154 4.154 28 H 0.073 0.927 29 H 0.010 0.990 30 H 0.007 0.993 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.619 -27.026 0.308 28.081 hybrid contribution 0.967 1.268 -0.682 1.734 sum 8.586 -25.758 -0.374 27.154 Atomic orbital electron populations 1.70107 1.07923 1.27898 1.51611 1.26050 0.95816 1.03578 0.94664 0.85454 0.78235 0.77815 0.79267 1.18951 1.20783 1.19129 1.21707 0.93641 0.92392 1.50695 0.91976 1.19011 0.94486 0.93198 0.94728 1.21353 0.98039 0.92904 1.00851 1.21432 0.98261 0.92925 1.01833 1.22400 0.94286 0.83160 1.00054 1.87925 1.35005 1.13636 1.94659 1.22880 0.92937 0.86518 0.89525 0.91002 1.25180 0.96567 0.89866 0.99452 0.84881 1.23468 0.99757 0.98034 0.94324 1.25538 0.92662 0.98948 0.94579 0.86057 1.25004 0.97042 0.90618 1.00691 1.66925 1.09197 1.03622 1.41466 1.24182 0.96439 1.09988 0.95337 0.89930 1.24516 0.93056 0.94289 0.97969 0.87957 1.23380 0.96699 1.01761 0.93550 0.92730 0.99012 0.99344 0.92388 0.92923 0.93001 0.92250 0.92428 0.93686 0.91156 0.88780 0.89851 0.90837 0.85922 0.89569 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.29 21.45 0.28 -58.44 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -4.03 5.15 30.60 0.16 -3.88 16 11 C -0.11 -3.99 5.58 30.60 0.17 -3.82 16 12 C 0.08 2.36 5.83 71.98 0.42 2.78 16 13 O -0.39 -11.72 9.43 -148.98 -1.41 -13.12 16 14 C 0.14 3.13 3.05 31.20 0.10 3.22 16 15 H 0.07 1.41 7.96 -2.01 -0.02 1.39 16 16 C -0.09 -1.50 5.53 -4.81 -0.03 -1.53 16 17 H 0.13 1.83 8.18 -2.12 -0.02 1.81 16 18 C -0.12 -1.35 5.33 33.72 0.18 -1.17 16 19 C -0.10 -1.32 5.01 -5.21 -0.03 -1.35 16 20 H 0.12 1.18 8.22 -1.92 -0.02 1.16 16 21 C 0.00 -0.07 6.54 87.00 0.57 0.50 16 22 N -0.59 -12.36 8.27 -643.57 -5.33 -17.69 16 23 C -0.15 -3.33 5.64 45.45 0.26 -3.07 16 24 H 0.08 1.40 1.10 -148.35 -0.16 1.24 16 25 C -0.08 -1.61 5.75 -5.76 -0.03 -1.64 16 26 H 0.10 2.33 8.20 -2.03 -0.02 2.32 16 27 C -0.12 -2.22 6.23 33.46 0.21 -2.01 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 0.70 6.89 -2.54 -0.02 0.68 16 38 H 0.09 0.73 8.16 -2.27 -0.02 0.71 16 39 H 0.08 1.11 8.18 -2.12 -0.02 1.09 16 40 H 0.07 0.82 7.10 -2.64 -0.02 0.80 16 41 H 0.33 6.20 8.84 -89.69 -0.79 5.41 16 42 H 0.09 1.28 8.16 -2.30 -0.02 1.26 16 43 H 0.06 1.40 7.57 -2.40 -0.02 1.39 16 Total: -1.00 -69.27 330.72 -1.56 -70.83 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.04 Total: 13.49 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 2.81 Total: -42.26 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -5.04 Total: -76.13 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.41 Total: -13.12 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.27 -1.56 -70.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395365501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.500 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds