Wall clock time and date at job start Mon Mar 30 2020 08:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48508 * 109.46860 * 269.99597 * 3 2 1 5 5 H 1.48495 * 109.47336 * 29.99666 * 3 2 1 6 6 H 1.48498 * 109.46914 * 150.00400 * 3 2 1 7 7 C 1.37876 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47370 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46936 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47329 * 179.97438 * 12 11 10 14 14 C 1.43198 * 114.00347 * 179.97438 * 13 12 11 15 15 H 1.08807 * 108.68197 * 330.06461 * 14 13 12 16 16 C 1.57412 * 109.09578 * 90.39232 * 14 13 12 17 17 H 1.10362 * 114.86608 * 353.42283 * 16 14 13 18 18 N 1.51810 * 108.83617 * 223.30906 * 16 14 13 19 19 C 1.52657 * 108.00996 * 263.85876 * 18 16 14 20 20 C 1.49254 * 88.29476 * 35.83805 * 19 18 16 21 21 H 1.07747 * 83.20054 * 31.79876 * 20 19 18 22 22 C 1.44709 * 152.96672 * 113.54713 * 20 19 18 23 23 C 1.56962 * 109.14019 * 210.00141 * 14 13 12 24 24 H 1.09932 * 116.12172 * 40.34041 * 23 14 13 25 25 C 1.57057 * 97.27608 * 275.90115 * 23 14 13 26 26 C 1.57232 * 96.91384 * 306.46385 * 25 23 14 27 27 H 1.10408 * 118.97222 * 192.99821 * 26 25 23 28 28 H 0.96992 * 120.00004 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47293 * 59.99890 * 9 7 2 30 30 H 1.09000 * 109.47237 * 300.00308 * 9 7 2 31 31 H 1.08994 * 109.46848 * 60.00279 * 10 9 7 32 32 H 1.09000 * 109.46727 * 299.99823 * 10 9 7 33 33 H 1.09000 * 109.47634 * 59.99662 * 11 10 9 34 34 H 1.09000 * 109.47130 * 299.99937 * 11 10 9 35 35 H 1.09003 * 109.47221 * 59.99869 * 12 11 10 36 36 H 1.09000 * 109.47058 * 299.99856 * 12 11 10 37 37 H 0.99807 * 113.62072 * 29.58638 * 18 16 14 38 38 H 1.08187 * 113.10291 * 282.03771 * 19 18 16 39 39 H 1.08227 * 113.04970 * 149.54964 * 19 18 16 40 40 H 1.09873 * 112.94328 * 99.60395 * 22 20 19 41 41 H 1.09884 * 112.93156 * 334.15009 * 22 20 19 42 42 H 1.09069 * 111.84845 * 63.78444 * 25 23 14 43 43 H 1.09106 * 111.75163 * 189.23796 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 8 1.7602 -7.3875 -0.0005 14 6 2.6018 -8.5461 -0.0005 15 1 3.5293 -8.3030 -0.5149 16 6 2.8963 -8.9687 1.4869 17 1 2.5216 -8.2667 2.2517 18 7 4.3679 -9.3189 1.6148 19 6 4.5067 -10.8326 1.4741 20 6 3.4019 -10.7960 0.4712 21 1 3.8107 -9.8247 0.2463 22 6 2.8692 -10.9467 -0.8658 23 6 1.8654 -9.7172 -0.7420 24 1 1.3062 -9.4411 -1.6473 25 6 1.0195 -10.2254 0.4798 26 6 2.2205 -10.4111 1.4774 27 1 2.0560 -10.9723 2.4139 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8720 -3.6044 0.8894 32 1 2.8720 -3.6044 -0.8905 33 1 0.8539 -5.0446 -0.8913 34 1 0.8534 -5.0451 0.8886 35 1 3.1007 -6.0923 0.8899 36 1 3.1019 -6.0922 -0.8901 37 1 4.9546 -8.8187 0.9809 38 1 4.2327 -11.3694 2.3725 39 1 5.4506 -11.1328 1.0378 40 1 2.3549 -11.9059 -1.0163 41 1 3.6277 -10.8027 -1.6477 42 1 0.3102 -9.4717 0.8240 43 1 0.5176 -11.1688 0.2597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395365507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:01 Heat of formation + Delta-G solvation = 106.572588 kcal Electronic energy + Delta-G solvation = -20298.236630 eV Core-core repulsion = 17349.298858 eV Total energy + Delta-G solvation = -2948.937772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.29457 -37.60294 -34.88807 -34.33973 -32.30933 -30.22687 -28.86091 -28.00279 -26.23679 -25.28949 -24.30777 -21.72339 -20.70818 -20.37848 -20.02171 -19.08757 -16.60286 -16.37856 -16.18049 -15.76851 -15.40479 -15.31997 -14.46824 -14.23253 -13.83678 -13.48097 -13.40714 -12.83708 -12.41132 -12.29279 -11.87298 -11.83217 -11.64829 -11.49070 -11.20907 -11.16283 -10.99094 -10.74160 -10.63428 -10.50371 -10.42260 -10.29290 -9.69436 -9.62263 -9.30317 -9.27601 -9.03469 -8.32733 -8.24463 -5.97735 -4.00219 3.23580 3.33021 3.35498 3.39084 3.42654 3.72494 3.99995 4.10839 4.41252 4.48053 4.63681 4.72362 4.82448 4.93964 5.09621 5.19168 5.23162 5.35613 5.36761 5.38265 5.47794 5.57653 5.58252 5.72699 5.77716 5.79588 5.81954 5.91245 6.00691 6.10489 6.13244 6.18266 6.25808 6.47612 6.78308 6.91831 7.02570 7.11218 7.35131 7.70435 7.85364 8.02840 8.45090 9.07072 9.63637 11.13663 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043616 B = 0.003001 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.816836 B = 9327.775640 C = 9618.949996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.062 3.938 13 O -0.379 6.379 14 C 0.071 3.929 15 H 0.052 0.948 16 C 0.067 3.933 17 H 0.116 0.884 18 N -0.725 5.725 19 C 0.113 3.887 20 C -0.258 4.258 21 H 0.077 0.923 22 C -0.055 4.055 23 C -0.101 4.101 24 H 0.113 0.887 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.122 0.878 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.347 0.653 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 -24.998 0.286 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.014 4.014 13 O -0.298 6.298 14 C 0.011 3.989 15 H 0.069 0.931 16 C -0.040 4.040 17 H 0.133 0.867 18 N -0.362 5.362 19 C -0.015 4.015 20 C -0.278 4.278 21 H 0.094 0.906 22 C -0.093 4.093 23 C -0.120 4.120 24 H 0.131 0.869 25 C -0.156 4.156 26 C -0.133 4.133 27 H 0.140 0.860 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.169 0.831 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.154 -24.722 0.953 25.494 hybrid contribution 0.728 1.127 -0.972 1.657 sum 6.882 -23.595 -0.019 24.578 Atomic orbital electron populations 1.69970 1.06052 1.26568 1.50919 1.25037 0.94856 0.99259 0.95382 0.86596 0.79849 0.83496 0.78073 1.20686 1.21208 1.19885 1.21272 0.93021 0.91154 1.50486 0.92735 1.19088 0.93977 0.91171 0.97321 1.21578 0.99193 0.93488 1.00265 1.21630 0.98036 0.92865 1.02733 1.22758 0.95461 0.83656 0.99501 1.87974 1.33787 1.13245 1.94780 1.24763 0.92999 0.86606 0.94555 0.93061 1.26228 0.85401 0.97029 0.95350 0.86656 1.61778 1.07029 1.06674 1.60720 1.22401 0.96065 0.86781 0.96207 1.23816 0.97737 1.10910 0.95326 0.90581 1.21096 0.97627 0.97313 0.93237 1.24691 0.96921 0.92388 0.97952 0.86882 1.23517 0.96563 1.00954 0.94586 1.25971 0.93568 0.96000 0.97722 0.86032 0.93011 0.96559 0.96517 0.93318 0.93427 0.91747 0.91659 0.93591 0.93904 0.83086 0.88735 0.90151 0.90951 0.91275 0.90223 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.12 -2.07 5.58 -26.73 -0.15 -2.22 16 12 C 0.06 0.94 5.75 37.16 0.21 1.16 16 13 O -0.38 -5.54 9.88 -35.23 -0.35 -5.89 16 14 C 0.07 0.82 2.01 -22.18 -0.04 0.77 16 15 H 0.05 0.59 6.69 -52.04 -0.35 0.24 16 16 C 0.07 0.74 5.17 -59.00 -0.30 0.44 16 17 H 0.12 1.45 8.24 -51.15 -0.42 1.02 16 18 N -0.72 -7.23 7.07 -106.43 -0.75 -7.98 16 19 C 0.11 0.89 8.26 -2.37 -0.02 0.87 16 20 C -0.26 -2.22 4.92 -92.46 -0.46 -2.67 16 21 H 0.08 0.71 1.48 -120.77 -0.18 0.53 16 22 C -0.05 -0.44 6.67 -27.14 -0.18 -0.63 16 23 C -0.10 -1.00 5.09 -82.81 -0.42 -1.42 16 24 H 0.11 1.12 8.22 -51.40 -0.42 0.70 16 25 C -0.12 -1.14 6.37 -22.23 -0.14 -1.29 16 26 C -0.11 -1.07 5.49 -80.93 -0.44 -1.51 16 27 H 0.12 1.02 8.08 -51.12 -0.41 0.60 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 37 H 0.35 3.29 7.92 -39.73 -0.31 2.97 16 38 H 0.09 0.69 7.58 -52.38 -0.40 0.30 16 39 H 0.08 0.52 8.08 -52.36 -0.42 0.09 16 40 H 0.07 0.53 8.17 -51.43 -0.42 0.10 16 41 H 0.07 0.51 8.22 -51.43 -0.42 0.09 16 42 H 0.08 0.88 8.05 -51.89 -0.42 0.47 16 43 H 0.07 0.59 8.11 -51.87 -0.42 0.17 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -30.83 331.06 -10.55 -41.38 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.52 Total: -0.40 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.64 Total: -22.34 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.02 Total: -34.67 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.35 Total: -5.89 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.83 -10.55 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395365507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.954 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds