Wall clock time and date at job start Mon Mar 30 2020 08:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48508 * 109.46860 * 269.99597 * 3 2 1 5 5 H 1.48495 * 109.47336 * 29.99666 * 3 2 1 6 6 H 1.48498 * 109.46914 * 150.00400 * 3 2 1 7 7 C 1.37876 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47370 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46936 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47329 * 179.97438 * 12 11 10 14 14 C 1.43198 * 114.00347 * 179.97438 * 13 12 11 15 15 H 1.08807 * 108.68197 * 330.06461 * 14 13 12 16 16 C 1.57412 * 109.09578 * 90.39232 * 14 13 12 17 17 H 1.10362 * 114.86608 * 353.42283 * 16 14 13 18 18 N 1.51810 * 108.83617 * 223.30906 * 16 14 13 19 19 C 1.52657 * 108.00996 * 263.85876 * 18 16 14 20 20 C 1.49254 * 88.29476 * 35.83805 * 19 18 16 21 21 H 1.07747 * 83.20054 * 31.79876 * 20 19 18 22 22 C 1.44709 * 152.96672 * 113.54713 * 20 19 18 23 23 C 1.56962 * 109.14019 * 210.00141 * 14 13 12 24 24 H 1.09932 * 116.12172 * 40.34041 * 23 14 13 25 25 C 1.57057 * 97.27608 * 275.90115 * 23 14 13 26 26 C 1.57232 * 96.91384 * 306.46385 * 25 23 14 27 27 H 1.10408 * 118.97222 * 192.99821 * 26 25 23 28 28 H 0.96992 * 120.00004 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47293 * 59.99890 * 9 7 2 30 30 H 1.09000 * 109.47237 * 300.00308 * 9 7 2 31 31 H 1.08994 * 109.46848 * 60.00279 * 10 9 7 32 32 H 1.09000 * 109.46727 * 299.99823 * 10 9 7 33 33 H 1.09000 * 109.47634 * 59.99662 * 11 10 9 34 34 H 1.09000 * 109.47130 * 299.99937 * 11 10 9 35 35 H 1.09003 * 109.47221 * 59.99869 * 12 11 10 36 36 H 1.09000 * 109.47058 * 299.99856 * 12 11 10 37 37 H 0.99807 * 113.62072 * 29.58638 * 18 16 14 38 38 H 1.08187 * 113.10291 * 282.03771 * 19 18 16 39 39 H 1.08227 * 113.04970 * 149.54964 * 19 18 16 40 40 H 1.09873 * 112.94328 * 99.60395 * 22 20 19 41 41 H 1.09884 * 112.93156 * 334.15009 * 22 20 19 42 42 H 1.09069 * 111.84845 * 63.78444 * 25 23 14 43 43 H 1.09106 * 111.75163 * 189.23796 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 8 1.7602 -7.3875 -0.0005 14 6 2.6018 -8.5461 -0.0005 15 1 3.5293 -8.3030 -0.5149 16 6 2.8963 -8.9687 1.4869 17 1 2.5216 -8.2667 2.2517 18 7 4.3679 -9.3189 1.6148 19 6 4.5067 -10.8326 1.4741 20 6 3.4019 -10.7960 0.4712 21 1 3.8107 -9.8247 0.2463 22 6 2.8692 -10.9467 -0.8658 23 6 1.8654 -9.7172 -0.7420 24 1 1.3062 -9.4411 -1.6473 25 6 1.0195 -10.2254 0.4798 26 6 2.2205 -10.4111 1.4774 27 1 2.0560 -10.9723 2.4139 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8720 -3.6044 0.8894 32 1 2.8720 -3.6044 -0.8905 33 1 0.8539 -5.0446 -0.8913 34 1 0.8534 -5.0451 0.8886 35 1 3.1007 -6.0923 0.8899 36 1 3.1019 -6.0922 -0.8901 37 1 4.9546 -8.8187 0.9809 38 1 4.2327 -11.3694 2.3725 39 1 5.4506 -11.1328 1.0378 40 1 2.3549 -11.9059 -1.0163 41 1 3.6277 -10.8027 -1.6477 42 1 0.3102 -9.4717 0.8240 43 1 0.5176 -11.1688 0.2597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395365507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:00 Heat of formation + Delta-G solvation = 87.631460 kcal Electronic energy + Delta-G solvation = -20299.057979 eV Core-core repulsion = 17349.298858 eV Total energy + Delta-G solvation = -2949.759121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.04177 -38.75869 -36.42856 -35.38994 -34.28717 -31.17517 -30.35532 -28.95074 -26.99531 -26.78504 -25.50176 -23.39908 -21.93986 -21.39554 -21.03846 -19.90562 -18.45753 -17.54808 -17.29822 -16.78530 -16.49624 -16.34622 -16.13746 -15.32375 -14.97456 -14.59443 -14.43963 -14.30647 -13.68704 -13.57185 -13.42404 -12.95467 -12.77395 -12.71666 -12.54300 -12.35761 -12.28365 -12.17196 -12.07048 -11.84337 -11.50308 -11.43095 -11.35579 -11.10515 -11.07007 -10.59693 -10.56876 -10.08424 -8.97714 -8.21579 -6.33526 1.38935 1.40880 1.52125 2.35305 2.41873 2.62970 2.89264 3.11240 3.26752 3.30410 3.59844 3.84210 3.92209 4.00454 4.03325 4.13177 4.21006 4.37732 4.38303 4.53568 4.54768 4.58603 4.60619 4.72837 4.82232 4.85122 4.90337 5.00039 5.04228 5.10785 5.12156 5.16076 5.22011 5.24704 5.31067 5.45384 5.50291 5.57408 5.71951 5.83223 6.19444 6.22632 6.36424 6.83689 7.35975 8.90566 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043616 B = 0.003001 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.816836 B = 9327.775640 C = 9618.949996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.074 3.926 13 O -0.397 6.397 14 C 0.068 3.932 15 H 0.054 0.946 16 C 0.061 3.939 17 H 0.092 0.908 18 N -0.734 5.734 19 C 0.118 3.882 20 C -0.248 4.248 21 H 0.067 0.933 22 C -0.046 4.046 23 C -0.105 4.105 24 H 0.111 0.889 25 C -0.118 4.118 26 C -0.113 4.113 27 H 0.133 0.867 28 H 0.264 0.736 29 H -0.009 1.009 30 H -0.010 1.010 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.349 0.651 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.348 -26.215 -0.015 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.002 4.002 13 O -0.316 6.316 14 C 0.009 3.991 15 H 0.072 0.928 16 C -0.047 4.047 17 H 0.110 0.890 18 N -0.372 5.372 19 C -0.009 4.009 20 C -0.268 4.268 21 H 0.085 0.915 22 C -0.084 4.084 23 C -0.124 4.124 24 H 0.129 0.871 25 C -0.156 4.156 26 C -0.131 4.131 27 H 0.151 0.849 28 H 0.073 0.927 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.171 0.829 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.053 -25.964 0.651 27.192 hybrid contribution 0.093 1.476 -0.861 1.712 sum 8.146 -24.488 -0.210 25.808 Atomic orbital electron populations 1.70110 1.07910 1.27847 1.51645 1.26047 0.95816 1.03578 0.94657 0.85400 0.78642 0.78155 0.78571 1.19636 1.20686 1.18612 1.21724 0.93634 0.92371 1.50630 0.91999 1.19014 0.94474 0.93189 0.94765 1.21353 0.98054 0.92864 1.00906 1.21441 0.98218 0.92875 1.01965 1.22491 0.94327 0.83127 1.00279 1.87936 1.34889 1.13806 1.94972 1.25000 0.92869 0.85927 0.95302 0.92828 1.26119 0.86590 0.97730 0.94287 0.88968 1.61757 1.06176 1.08249 1.60989 1.22513 0.96751 0.85238 0.96357 1.23832 0.97260 1.10396 0.95286 0.91491 1.21054 0.97405 0.96790 0.93165 1.24768 0.97426 0.92437 0.97758 0.87093 1.23503 0.96412 1.01033 0.94668 1.26078 0.93674 0.94968 0.98417 0.84933 0.92722 0.99100 0.99183 0.92708 0.92554 0.92422 0.92606 0.93084 0.92766 0.82891 0.88042 0.88243 0.89491 0.90160 0.92372 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.99 5.15 30.60 0.16 -3.83 16 11 C -0.11 -3.92 5.58 30.59 0.17 -3.75 16 12 C 0.07 2.21 5.75 71.98 0.41 2.63 16 13 O -0.40 -11.61 9.88 -148.98 -1.47 -13.08 16 14 C 0.07 1.53 2.01 33.54 0.07 1.60 16 15 H 0.05 1.17 6.69 -2.49 -0.02 1.15 16 16 C 0.06 1.30 5.17 47.77 0.25 1.55 16 17 H 0.09 2.38 8.24 -1.66 -0.01 2.37 16 18 N -0.73 -13.59 7.07 -490.62 -3.47 -17.06 16 19 C 0.12 1.56 8.26 83.96 0.69 2.25 16 20 C -0.25 -3.65 4.92 -11.98 -0.06 -3.71 16 21 H 0.07 1.12 1.48 -117.08 -0.17 0.95 16 22 C -0.05 -0.63 6.67 30.33 0.20 -0.42 16 23 C -0.11 -1.95 5.09 -5.74 -0.03 -1.98 16 24 H 0.11 2.09 8.22 -1.89 -0.02 2.07 16 25 C -0.12 -2.17 6.37 33.51 0.21 -1.96 16 26 C -0.11 -1.95 5.49 -4.52 -0.02 -1.98 16 27 H 0.13 1.98 8.08 -1.63 -0.01 1.97 16 28 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 37 H 0.35 6.11 7.92 -90.56 -0.72 5.39 16 38 H 0.10 1.21 7.58 -2.81 -0.02 1.19 16 39 H 0.10 0.95 8.08 -2.79 -0.02 0.93 16 40 H 0.09 0.97 8.17 -1.92 -0.02 0.95 16 41 H 0.08 0.95 8.22 -1.91 -0.02 0.93 16 42 H 0.06 1.31 8.05 -2.35 -0.02 1.29 16 43 H 0.09 1.29 8.11 -2.33 -0.02 1.27 16 Total: -1.00 -66.59 331.06 0.38 -66.21 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.11 Total: 14.66 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 2.90 Total: -39.66 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -3.18 Total: -75.12 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.47 Total: -13.08 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -66.59 0.38 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395365507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.845 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds