Wall clock time and date at job start Mon Mar 30 2020 06:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46903 * 111.00087 * 2 1 4 4 C 1.52997 * 109.47350 * 66.04552 * 3 2 1 5 5 C 1.52998 * 109.47256 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46824 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46733 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99995 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00117 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00266 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99784 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47530 * 89.99760 * 11 9 7 13 13 H 1.48503 * 109.47278 * 209.99926 * 11 9 7 14 14 H 1.48503 * 109.47428 * 329.99873 * 11 9 7 15 15 C 1.46897 * 110.99967 * 236.04429 * 2 1 3 16 16 C 1.50698 * 109.47421 * 293.95154 * 15 2 1 17 17 C 1.38219 * 120.00966 * 104.99560 * 16 15 2 18 18 C 1.38227 * 120.02402 * 179.72409 * 17 16 15 19 19 C 1.38263 * 120.05156 * 0.30685 * 18 17 16 20 20 C 1.38177 * 120.02526 * 359.97438 * 19 18 17 21 21 C 1.38439 * 120.01637 * 285.30265 * 16 15 2 22 22 F 1.35105 * 120.02463 * 359.97438 * 21 16 15 23 23 H 1.09003 * 109.47597 * 183.95748 * 1 2 3 24 24 H 1.09005 * 109.47436 * 303.95370 * 1 2 3 25 25 H 1.09008 * 109.47255 * 63.95685 * 1 2 3 26 26 H 1.09007 * 109.47160 * 186.04568 * 3 2 1 27 27 H 1.08996 * 109.47076 * 306.04078 * 3 2 1 28 28 H 1.09007 * 109.47002 * 300.00113 * 4 3 2 29 29 H 1.09006 * 109.47342 * 59.99759 * 4 3 2 30 30 H 1.08990 * 109.47346 * 300.00290 * 5 4 3 31 31 H 1.09004 * 109.47017 * 60.00277 * 5 4 3 32 32 H 1.08994 * 109.47434 * 299.99937 * 6 5 4 33 33 H 1.08994 * 109.46948 * 60.00440 * 6 5 4 34 34 H 0.96998 * 119.99785 * 180.02562 * 10 9 7 35 35 H 1.09012 * 109.47067 * 173.95513 * 15 2 1 36 36 H 1.08992 * 109.47414 * 53.95639 * 15 2 1 37 37 H 1.08002 * 119.99072 * 0.02562 * 17 16 15 38 38 H 1.07999 * 119.97012 * 180.27779 * 18 17 16 39 39 H 1.08004 * 119.99046 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.01271 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8157 4.1718 2.6365 7 6 2.3558 5.5787 2.6364 8 1 2.9039 5.9468 1.7816 9 6 2.1503 6.3961 3.7276 10 7 2.6221 7.6237 3.7278 11 14 1.2030 5.7594 5.2063 12 1 2.1467 5.1325 6.1663 13 1 0.5009 6.8883 5.8680 14 1 0.2083 4.7511 4.7602 15 6 1.9953 -0.7660 -1.1375 16 6 1.6369 -2.2204 -0.9728 17 6 0.6298 -2.7754 -1.7398 18 6 0.3047 -4.1108 -1.5930 19 6 0.9819 -4.8914 -0.6745 20 6 1.9851 -4.3374 0.0975 21 6 2.3118 -2.9997 -0.0487 22 9 3.2925 -2.4568 0.7055 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3634 0.5740 0.8525 25 1 -0.3634 0.4512 -0.9234 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9273 -0.8309 28 1 0.5471 2.0845 1.4265 29 1 2.0657 1.5016 2.1492 30 1 3.2645 3.4582 1.2104 31 1 1.7463 4.0418 0.4875 32 1 0.7314 4.1993 2.7441 33 1 2.2494 3.6158 3.4676 34 1 2.4778 8.1986 4.4957 35 1 3.0797 -0.6611 -1.1756 36 1 1.5611 -0.3873 -2.0627 37 1 0.1001 -2.1666 -2.4576 38 1 -0.4793 -4.5447 -2.1959 39 1 0.7268 -5.9347 -0.5603 40 1 2.5142 -4.9474 0.8146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395385343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:59 Heat of formation + Delta-G solvation = -34.057260 kcal Electronic energy + Delta-G solvation = -19307.880696 eV Core-core repulsion = 16229.384451 eV Total energy + Delta-G solvation = -3078.496245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.89791 -39.52880 -37.60387 -34.59039 -32.58301 -31.59361 -30.74589 -28.92827 -27.38806 -25.54648 -23.26033 -23.00602 -21.38098 -20.56531 -19.98424 -17.71120 -16.64683 -16.62105 -16.11569 -15.96238 -15.40106 -15.13817 -14.65751 -14.26816 -14.20591 -14.01241 -13.35861 -13.08041 -12.67727 -12.56291 -12.55249 -12.24502 -11.91241 -11.73416 -11.69927 -11.46425 -11.13690 -11.05189 -10.72179 -10.39850 -9.83951 -9.61587 -9.48176 -9.26979 -9.10654 -8.87036 -8.48703 -8.33770 -5.99555 -3.96890 0.88680 0.93607 3.26919 3.35142 3.41883 3.46757 3.99290 4.09761 4.42472 4.47772 4.50239 4.67754 4.87573 5.05787 5.12198 5.23150 5.27104 5.34940 5.39046 5.55352 5.57455 5.65025 5.79322 5.83778 5.90099 5.91971 6.03977 6.08128 6.11039 6.15205 6.43347 6.63194 6.70868 6.82132 6.94166 7.03994 7.13414 7.39460 7.52368 7.85999 8.59997 9.05860 9.63667 11.14121 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.037127 B = 0.003115 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.986258 B = 8988.023938 C = 9113.507299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.537 5.537 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.014 4.014 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.906 5.906 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.093 3.907 16 C -0.112 4.112 17 C -0.087 4.087 18 C -0.135 4.135 19 C -0.093 4.093 20 C -0.160 4.160 21 C 0.125 3.875 22 F -0.129 7.129 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -26.095 -12.005 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.139 4.139 6 C -0.051 4.051 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.137 4.137 10 N -0.546 5.546 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.034 4.034 16 C -0.114 4.114 17 C -0.106 4.106 18 C -0.153 4.153 19 C -0.112 4.112 20 C -0.179 4.179 21 C 0.105 3.895 22 F -0.107 7.107 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.042 0.958 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.621 -26.117 -11.439 28.884 hybrid contribution -0.584 0.276 0.264 0.698 sum -5.205 -25.841 -11.175 28.631 Atomic orbital electron populations 1.22454 0.87487 1.01843 1.00921 1.62028 1.08013 1.14632 1.41381 1.22240 0.99979 0.86427 0.98364 1.21708 1.00773 0.96831 0.96096 1.21421 0.99967 0.92651 0.99887 1.19564 0.96344 0.96147 0.93053 1.21198 1.35103 0.95753 1.03647 0.91139 1.25050 0.95403 0.94738 0.98469 1.69922 1.46541 1.07243 1.30859 0.86757 0.80768 0.78571 0.83067 1.20298 1.21483 1.19011 1.20971 1.00962 0.88812 0.92697 1.19901 0.97763 0.96242 0.97463 1.20981 0.95715 0.95285 0.98579 1.21155 1.00747 0.93975 0.99468 1.20996 0.94953 1.00086 0.95138 1.21190 1.00478 0.93753 1.02478 1.17532 0.88610 0.91493 0.91851 1.91540 1.59088 1.86200 1.73863 0.91806 0.90631 0.95750 0.90798 0.94864 0.92549 0.91641 0.92840 0.93089 0.96809 0.97070 0.92826 0.89610 0.93565 0.85383 0.85499 0.85239 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.14 60.06 0.55 0.80 16 2 N -0.54 -7.00 4.75 -244.37 -1.16 -8.16 16 3 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 4 C -0.12 -1.95 5.14 -26.73 -0.14 -2.08 16 5 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 6 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 7 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 11 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 15 C 0.09 1.03 4.78 -4.98 -0.02 1.01 16 16 C -0.11 -1.17 4.43 -104.56 -0.46 -1.64 16 17 C -0.09 -0.72 9.12 -39.59 -0.36 -1.09 16 18 C -0.14 -0.97 10.04 -39.58 -0.40 -1.37 16 19 C -0.09 -0.68 10.04 -39.59 -0.40 -1.08 16 20 C -0.16 -1.45 10.03 -39.52 -0.40 -1.84 16 21 C 0.12 1.41 7.25 -39.42 -0.29 1.13 16 22 F -0.13 -1.73 16.76 2.25 0.04 -1.69 16 23 H 0.06 0.70 6.88 -51.93 -0.36 0.34 16 24 H 0.08 0.95 6.30 -51.93 -0.33 0.62 16 25 H 0.02 0.26 8.14 -51.92 -0.42 -0.16 16 26 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 27 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 33 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.09 0.97 7.88 -51.92 -0.41 0.56 16 36 H 0.05 0.45 7.93 -51.93 -0.41 0.04 16 37 H 0.13 0.86 8.00 -52.49 -0.42 0.44 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -32.17 330.28 -9.06 -41.23 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.41 Total: -4.42 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.61 Total: -21.80 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.39 Total: -36.02 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.17 -9.06 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395385343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.176 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds