Wall clock time and date at job start Mon Mar 30 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46903 * 111.00087 * 2 1 4 4 C 1.52997 * 109.47350 * 66.04552 * 3 2 1 5 5 C 1.52998 * 109.47256 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46824 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46733 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99995 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00117 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00266 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99784 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47530 * 89.99760 * 11 9 7 13 13 H 1.48503 * 109.47278 * 209.99926 * 11 9 7 14 14 H 1.48503 * 109.47428 * 329.99873 * 11 9 7 15 15 C 1.46897 * 110.99967 * 236.04429 * 2 1 3 16 16 C 1.50698 * 109.47421 * 293.95154 * 15 2 1 17 17 C 1.38219 * 120.00966 * 104.99560 * 16 15 2 18 18 C 1.38227 * 120.02402 * 179.72409 * 17 16 15 19 19 C 1.38263 * 120.05156 * 0.30685 * 18 17 16 20 20 C 1.38177 * 120.02526 * 359.97438 * 19 18 17 21 21 C 1.38439 * 120.01637 * 285.30265 * 16 15 2 22 22 F 1.35105 * 120.02463 * 359.97438 * 21 16 15 23 23 H 1.09003 * 109.47597 * 183.95748 * 1 2 3 24 24 H 1.09005 * 109.47436 * 303.95370 * 1 2 3 25 25 H 1.09008 * 109.47255 * 63.95685 * 1 2 3 26 26 H 1.09007 * 109.47160 * 186.04568 * 3 2 1 27 27 H 1.08996 * 109.47076 * 306.04078 * 3 2 1 28 28 H 1.09007 * 109.47002 * 300.00113 * 4 3 2 29 29 H 1.09006 * 109.47342 * 59.99759 * 4 3 2 30 30 H 1.08990 * 109.47346 * 300.00290 * 5 4 3 31 31 H 1.09004 * 109.47017 * 60.00277 * 5 4 3 32 32 H 1.08994 * 109.47434 * 299.99937 * 6 5 4 33 33 H 1.08994 * 109.46948 * 60.00440 * 6 5 4 34 34 H 0.96998 * 119.99785 * 180.02562 * 10 9 7 35 35 H 1.09012 * 109.47067 * 173.95513 * 15 2 1 36 36 H 1.08992 * 109.47414 * 53.95639 * 15 2 1 37 37 H 1.08002 * 119.99072 * 0.02562 * 17 16 15 38 38 H 1.07999 * 119.97012 * 180.27779 * 18 17 16 39 39 H 1.08004 * 119.99046 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.01271 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8157 4.1718 2.6365 7 6 2.3558 5.5787 2.6364 8 1 2.9039 5.9468 1.7816 9 6 2.1503 6.3961 3.7276 10 7 2.6221 7.6237 3.7278 11 14 1.2030 5.7594 5.2063 12 1 2.1467 5.1325 6.1663 13 1 0.5009 6.8883 5.8680 14 1 0.2083 4.7511 4.7602 15 6 1.9953 -0.7660 -1.1375 16 6 1.6369 -2.2204 -0.9728 17 6 0.6298 -2.7754 -1.7398 18 6 0.3047 -4.1108 -1.5930 19 6 0.9819 -4.8914 -0.6745 20 6 1.9851 -4.3374 0.0975 21 6 2.3118 -2.9997 -0.0487 22 9 3.2925 -2.4568 0.7055 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3634 0.5740 0.8525 25 1 -0.3634 0.4512 -0.9234 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9273 -0.8309 28 1 0.5471 2.0845 1.4265 29 1 2.0657 1.5016 2.1492 30 1 3.2645 3.4582 1.2104 31 1 1.7463 4.0418 0.4875 32 1 0.7314 4.1993 2.7441 33 1 2.2494 3.6158 3.4676 34 1 2.4778 8.1986 4.4957 35 1 3.0797 -0.6611 -1.1756 36 1 1.5611 -0.3873 -2.0627 37 1 0.1001 -2.1666 -2.4576 38 1 -0.4793 -4.5447 -2.1959 39 1 0.7268 -5.9347 -0.5603 40 1 2.5142 -4.9474 0.8146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395385343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:58 Heat of formation + Delta-G solvation = -52.839225 kcal Electronic energy + Delta-G solvation = -19308.695143 eV Core-core repulsion = 16229.384451 eV Total energy + Delta-G solvation = -3079.310692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.76497 -40.23440 -38.58654 -36.25482 -34.39725 -32.74297 -31.39700 -30.51410 -28.25249 -27.01181 -24.60841 -23.65701 -22.48726 -21.70327 -21.62467 -18.86729 -18.42026 -17.39572 -16.96698 -16.79071 -16.54135 -16.33627 -16.10996 -15.50330 -15.34505 -14.90464 -14.75069 -14.20864 -13.94947 -13.83883 -13.68772 -13.35600 -13.21268 -12.97832 -12.81294 -12.62137 -12.41019 -12.23700 -11.91350 -11.90066 -11.75852 -11.39967 -11.25685 -11.19636 -10.77000 -9.92273 -9.56950 -9.28935 -8.30359 -6.34320 0.23526 0.29647 1.35385 1.36745 1.49539 2.35919 2.60198 3.04940 3.07589 3.41980 3.68368 3.82006 4.01068 4.11402 4.17238 4.25891 4.37073 4.45071 4.49475 4.52466 4.57309 4.65129 4.68601 4.80153 4.84499 4.98599 5.04820 5.13750 5.16551 5.17826 5.25210 5.29007 5.41887 5.50234 5.56675 5.63863 5.67812 5.98446 6.07702 6.10352 6.28792 6.73747 7.30472 8.86671 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.037127 B = 0.003115 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.986258 B = 8988.023938 C = 9113.507299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.065 3.935 4 C -0.104 4.104 5 C -0.094 4.094 6 C -0.012 4.012 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.001 3.999 10 N -0.953 5.953 11 Si 0.953 3.047 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.247 1.247 15 C 0.095 3.905 16 C -0.126 4.126 17 C -0.089 4.089 18 C -0.129 4.129 19 C -0.090 4.090 20 C -0.168 4.168 21 C 0.090 3.910 22 F -0.151 7.151 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 -28.821 -12.297 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.063 4.063 4 C -0.142 4.142 5 C -0.132 4.132 6 C -0.049 4.049 7 C -0.572 4.572 8 H 0.049 0.951 9 C -0.195 4.195 10 N -0.594 5.594 11 Si 0.776 3.224 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.170 1.170 15 C -0.032 4.032 16 C -0.127 4.127 17 C -0.108 4.108 18 C -0.147 4.147 19 C -0.108 4.108 20 C -0.187 4.187 21 C 0.070 3.930 22 F -0.130 7.130 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.714 -28.864 -11.751 31.879 hybrid contribution 0.093 1.107 0.257 1.140 sum -6.621 -27.756 -11.494 30.763 Atomic orbital electron populations 1.22437 0.86638 1.02288 1.01041 1.61956 1.08889 1.13729 1.42888 1.22044 0.99991 0.87306 0.96927 1.21520 1.00818 0.94387 0.97449 1.21286 0.99746 0.94642 0.97523 1.19532 0.96219 0.93669 0.95498 1.21564 1.34853 0.98292 1.02540 0.95111 1.26067 0.96535 0.94825 1.02093 1.70074 1.48225 1.08858 1.32224 0.85611 0.79634 0.78489 0.78630 1.19235 1.20745 1.17033 1.20955 1.00431 0.89324 0.92512 1.19930 0.98815 0.95721 0.98245 1.21236 0.95010 0.96185 0.98341 1.21557 1.00741 0.93405 0.99010 1.21390 0.93763 1.01513 0.94138 1.21426 1.01119 0.93026 1.03080 1.17943 0.89300 0.92778 0.92939 1.91475 1.60182 1.86668 1.74646 0.91028 0.91569 0.94628 0.91059 0.94211 0.91881 0.92347 0.93509 0.93282 0.96283 0.96684 0.92480 0.90635 0.92092 0.83636 0.82532 0.82328 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.14 127.69 1.17 1.68 16 2 N -0.55 -13.76 4.75 -927.05 -4.41 -18.17 16 3 C 0.06 1.78 4.96 86.30 0.43 2.20 16 4 C -0.10 -3.38 5.14 30.59 0.16 -3.22 16 5 C -0.09 -3.79 5.15 30.59 0.16 -3.63 16 6 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 7 C -0.53 -32.13 9.66 25.60 0.25 -31.89 16 8 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 9 C 0.00 0.07 5.47 84.66 0.46 0.53 16 10 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 11 Si 0.95 45.79 27.47 68.60 1.88 47.68 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 15 C 0.09 2.01 4.78 85.56 0.41 2.42 16 16 C -0.13 -2.47 4.43 -19.82 -0.09 -2.56 16 17 C -0.09 -1.25 9.12 22.26 0.20 -1.05 16 18 C -0.13 -1.39 10.04 22.27 0.22 -1.17 16 19 C -0.09 -1.04 10.04 22.26 0.22 -0.82 16 20 C -0.17 -2.80 10.03 22.31 0.22 -2.58 16 21 C 0.09 2.00 7.25 22.37 0.16 2.16 16 22 F -0.15 -4.17 16.76 44.97 0.75 -3.42 16 23 H 0.07 1.43 6.88 -2.39 -0.02 1.41 16 24 H 0.07 1.54 6.30 -2.38 -0.02 1.53 16 25 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.07 1.97 7.93 -2.38 -0.02 1.95 16 27 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 28 H 0.06 1.97 6.47 -2.38 -0.02 1.96 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 33 H 0.01 0.72 7.57 -2.39 -0.02 0.70 16 34 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.08 1.71 7.88 -2.38 -0.02 1.69 16 36 H 0.06 1.08 7.93 -2.39 -0.02 1.07 16 37 H 0.15 1.46 8.00 -2.91 -0.02 1.44 16 38 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 40 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -70.66 330.28 3.57 -67.09 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.94 Total: 6.38 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 4.10 Total: -38.36 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -4.11 Total: -79.37 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.75 Total: -3.42 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.68 kcal Total: -70.66 3.57 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395385343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.255 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds