Wall clock time and date at job start Mon Mar 30 2020 06:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47405 * 2 1 4 4 C 1.46498 * 120.00025 * 270.00414 * 3 2 1 5 5 C 1.53001 * 109.47089 * 269.99685 * 4 3 2 6 6 C 1.52999 * 109.47313 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47313 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47211 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99721 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99797 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00419 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46726 * 89.99898 * 12 10 8 14 14 H 1.48490 * 109.47459 * 210.00373 * 12 10 8 15 15 H 1.48502 * 109.46838 * 330.00598 * 12 10 8 16 16 C 1.39671 * 120.00000 * 89.99982 * 3 2 1 17 17 C 1.38946 * 120.06186 * 179.97438 * 16 3 2 18 18 C 1.38100 * 119.97200 * 180.02562 * 17 16 3 19 19 C 1.38266 * 120.10196 * 0.02562 * 18 17 16 20 20 C 1.38502 * 120.12307 * 0.02562 * 19 18 17 21 21 F 1.35092 * 119.98550 * 179.97438 * 20 19 18 22 22 C 1.38346 * 120.02423 * 359.97438 * 20 19 18 23 23 H 1.09001 * 109.47222 * 299.99984 * 1 2 3 24 24 H 1.08997 * 109.47502 * 59.99728 * 1 2 3 25 25 H 1.09002 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47222 * 240.00016 * 2 1 3 27 27 H 1.08997 * 109.47502 * 120.00271 * 2 1 3 28 28 H 1.08996 * 109.47359 * 29.99691 * 4 3 2 29 29 H 1.09006 * 109.47155 * 149.99809 * 4 3 2 30 30 H 1.09004 * 109.46882 * 299.99926 * 5 4 3 31 31 H 1.08998 * 109.47181 * 59.99769 * 5 4 3 32 32 H 1.09001 * 109.47002 * 300.00462 * 6 5 4 33 33 H 1.09006 * 109.47204 * 59.99957 * 6 5 4 34 34 H 1.08996 * 109.47025 * 300.00013 * 7 6 5 35 35 H 1.09002 * 109.46586 * 60.00005 * 7 6 5 36 36 H 0.97010 * 119.99909 * 179.97438 * 11 10 8 37 37 H 1.07995 * 120.01377 * 0.02562 * 17 16 3 38 38 H 1.08000 * 119.94820 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.94070 * 179.97438 * 19 18 17 40 40 H 1.07991 * 120.04979 * 180.27899 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 3.9626 2.5531 -3.0351 7 6 5.4078 2.3132 -3.4765 8 6 5.6590 3.0237 -4.7816 9 1 4.8671 3.5900 -5.2492 10 6 6.8998 2.9515 -5.3781 11 7 7.8642 2.2623 -4.8084 12 14 7.2115 3.8327 -6.9955 13 1 7.6972 5.2094 -6.7235 14 1 8.2356 3.0911 -7.7740 15 1 5.9490 3.8982 -7.7747 16 6 2.2512 2.0396 1.2096 17 6 2.7149 3.3494 1.2111 18 6 2.9450 3.9984 2.4081 19 6 2.7151 3.3467 3.6057 20 6 2.2538 2.0407 3.6090 21 9 2.0307 1.4064 4.7807 22 6 2.0216 1.3856 2.4128 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5817 1.6877 -2.0283 29 1 2.0955 3.1411 -1.1383 30 1 4.3883 2.2155 -0.9508 31 1 3.8744 0.7622 -1.8408 32 1 3.2818 2.1695 -3.7949 33 1 3.7958 3.6224 -2.9043 34 1 6.0883 2.6972 -2.7166 35 1 5.5750 1.2441 -3.6072 36 1 8.7372 2.2112 -5.2283 37 1 2.8953 3.8596 0.2765 38 1 3.3050 5.0166 2.4089 39 1 2.8963 3.8566 4.5404 40 1 1.6577 0.3689 2.4149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395387635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:30 Heat of formation + Delta-G solvation = -38.836381 kcal Electronic energy + Delta-G solvation = -19426.367281 eV Core-core repulsion = 16347.663797 eV Total energy + Delta-G solvation = -3078.703484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.89784 -39.69681 -36.82522 -34.62657 -32.61389 -31.42558 -30.67659 -29.42968 -27.58176 -24.98995 -23.67918 -22.50314 -21.94972 -20.35898 -20.09406 -17.96644 -16.58207 -16.25494 -16.16594 -15.59868 -15.51428 -15.05525 -14.51885 -14.45583 -14.23542 -13.93456 -13.33067 -13.01584 -12.64878 -12.43555 -12.27972 -12.15310 -11.95394 -11.75530 -11.54558 -11.24211 -11.06790 -10.91595 -10.57627 -10.54425 -10.48983 -9.94493 -9.69408 -9.31149 -9.05697 -8.79719 -8.35164 -7.34968 -5.99952 -4.02635 1.23953 1.45768 3.01219 3.31203 3.37516 3.40562 3.71190 4.31430 4.45444 4.68632 4.81623 5.04692 5.07301 5.09570 5.19453 5.29024 5.35685 5.38445 5.45442 5.51250 5.62139 5.68611 5.72898 5.91332 6.00587 6.02745 6.11397 6.17887 6.25968 6.42969 6.46569 6.70356 6.82034 6.89010 7.09970 7.27274 7.44698 7.67736 7.82408 8.00321 8.42623 9.04861 9.61549 11.11267 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.003489 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.876066 B = 8024.020387 C = 8627.341372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.619 5.619 4 C 0.120 3.880 5 C -0.136 4.136 6 C -0.108 4.108 7 C 0.022 3.978 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.251 3.749 17 C -0.205 4.205 18 C -0.043 4.043 19 C -0.222 4.222 20 C 0.141 3.859 21 F -0.145 7.145 22 C -0.242 4.242 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 -1.558 14.254 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.327 5.327 4 C -0.002 4.002 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.016 4.016 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.147 3.853 17 C -0.228 4.228 18 C -0.062 4.062 19 C -0.243 4.243 20 C 0.121 3.879 21 F -0.123 7.123 22 C -0.265 4.265 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.145 -1.752 14.073 20.030 hybrid contribution 0.313 0.268 -0.714 0.825 sum -13.833 -1.484 13.358 19.287 Atomic orbital electron populations 1.22223 0.96388 1.01910 1.02473 1.21436 0.93894 0.82578 1.02978 1.46833 1.69689 1.13107 1.03069 1.21694 0.97635 0.97265 0.83630 1.22090 0.94920 1.01310 0.99113 1.21577 1.00846 0.98509 0.93685 1.19081 0.89620 0.96933 0.95917 1.21273 0.96739 1.31311 1.06614 0.92740 1.25033 0.96311 0.95515 0.97643 1.69971 1.03013 1.41203 1.39315 0.86610 0.77982 0.79703 0.83807 1.20658 1.21238 1.19893 1.17546 0.91263 0.91057 0.85427 1.20875 1.08396 0.94210 0.99270 1.20737 0.95195 0.99279 0.90963 1.20823 1.09601 0.94297 0.99529 1.17369 0.98998 0.91108 0.80444 1.91465 1.92384 1.82237 1.46252 1.20496 1.13959 1.01876 0.90218 0.92456 0.92337 0.91823 0.90300 0.90806 0.90828 0.90674 0.92081 0.92371 0.93428 0.93365 0.96682 0.96768 0.93023 0.84985 0.85215 0.85528 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 1.15 5.88 -4.05 -0.02 1.13 16 3 N -0.62 -7.49 2.61 -171.76 -0.45 -7.93 16 4 C 0.12 1.53 5.16 -4.04 -0.02 1.51 16 5 C -0.14 -2.18 5.54 -26.73 -0.15 -2.33 16 6 C -0.11 -2.11 5.15 -26.73 -0.14 -2.25 16 7 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 8 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 9 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 12 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.25 3.20 6.55 -83.80 -0.55 2.65 16 17 C -0.21 -2.55 9.21 -39.37 -0.36 -2.92 16 18 C -0.04 -0.48 10.04 -39.62 -0.40 -0.88 16 19 C -0.22 -2.54 10.02 -39.47 -0.40 -2.94 16 20 C 0.14 1.76 7.30 -39.44 -0.29 1.47 16 21 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 22 C -0.24 -2.98 9.18 -39.31 -0.36 -3.34 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.07 0.70 6.20 -51.93 -0.32 0.38 16 28 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.07 0.92 6.20 -51.93 -0.32 0.60 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.13 1.61 6.14 -52.49 -0.32 1.29 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.13 1.45 6.14 -52.49 -0.32 1.12 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -30.36 334.08 -8.83 -39.19 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.32 Total: -2.64 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.85 Total: -22.11 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.29 Total: -34.25 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.36 -8.83 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395387635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.358 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds