Wall clock time and date at job start Mon Mar 30 2020 06:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47405 * 2 1 4 4 C 1.46498 * 120.00025 * 270.00414 * 3 2 1 5 5 C 1.53001 * 109.47089 * 269.99685 * 4 3 2 6 6 C 1.52999 * 109.47313 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47313 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47211 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99721 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99797 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00419 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46726 * 89.99898 * 12 10 8 14 14 H 1.48490 * 109.47459 * 210.00373 * 12 10 8 15 15 H 1.48502 * 109.46838 * 330.00598 * 12 10 8 16 16 C 1.39671 * 120.00000 * 89.99982 * 3 2 1 17 17 C 1.38946 * 120.06186 * 179.97438 * 16 3 2 18 18 C 1.38100 * 119.97200 * 180.02562 * 17 16 3 19 19 C 1.38266 * 120.10196 * 0.02562 * 18 17 16 20 20 C 1.38502 * 120.12307 * 0.02562 * 19 18 17 21 21 F 1.35092 * 119.98550 * 179.97438 * 20 19 18 22 22 C 1.38346 * 120.02423 * 359.97438 * 20 19 18 23 23 H 1.09001 * 109.47222 * 299.99984 * 1 2 3 24 24 H 1.08997 * 109.47502 * 59.99728 * 1 2 3 25 25 H 1.09002 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47222 * 240.00016 * 2 1 3 27 27 H 1.08997 * 109.47502 * 120.00271 * 2 1 3 28 28 H 1.08996 * 109.47359 * 29.99691 * 4 3 2 29 29 H 1.09006 * 109.47155 * 149.99809 * 4 3 2 30 30 H 1.09004 * 109.46882 * 299.99926 * 5 4 3 31 31 H 1.08998 * 109.47181 * 59.99769 * 5 4 3 32 32 H 1.09001 * 109.47002 * 300.00462 * 6 5 4 33 33 H 1.09006 * 109.47204 * 59.99957 * 6 5 4 34 34 H 1.08996 * 109.47025 * 300.00013 * 7 6 5 35 35 H 1.09002 * 109.46586 * 60.00005 * 7 6 5 36 36 H 0.97010 * 119.99909 * 179.97438 * 11 10 8 37 37 H 1.07995 * 120.01377 * 0.02562 * 17 16 3 38 38 H 1.08000 * 119.94820 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.94070 * 179.97438 * 19 18 17 40 40 H 1.07991 * 120.04979 * 180.27899 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 3.9626 2.5531 -3.0351 7 6 5.4078 2.3132 -3.4765 8 6 5.6590 3.0237 -4.7816 9 1 4.8671 3.5900 -5.2492 10 6 6.8998 2.9515 -5.3781 11 7 7.8642 2.2623 -4.8084 12 14 7.2115 3.8327 -6.9955 13 1 7.6972 5.2094 -6.7235 14 1 8.2356 3.0911 -7.7740 15 1 5.9490 3.8982 -7.7747 16 6 2.2512 2.0396 1.2096 17 6 2.7149 3.3494 1.2111 18 6 2.9450 3.9984 2.4081 19 6 2.7151 3.3467 3.6057 20 6 2.2538 2.0407 3.6090 21 9 2.0307 1.4064 4.7807 22 6 2.0216 1.3856 2.4128 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5817 1.6877 -2.0283 29 1 2.0955 3.1411 -1.1383 30 1 4.3883 2.2155 -0.9508 31 1 3.8744 0.7622 -1.8408 32 1 3.2818 2.1695 -3.7949 33 1 3.7958 3.6224 -2.9043 34 1 6.0883 2.6972 -2.7166 35 1 5.5750 1.2441 -3.6072 36 1 8.7372 2.2112 -5.2283 37 1 2.8953 3.8596 0.2765 38 1 3.3050 5.0166 2.4089 39 1 2.8963 3.8566 4.5404 40 1 1.6577 0.3689 2.4149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395387635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:30 Heat of formation + Delta-G solvation = -53.001489 kcal Electronic energy + Delta-G solvation = -19426.981526 eV Core-core repulsion = 16347.663797 eV Total energy + Delta-G solvation = -3079.317729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.86492 -40.62460 -37.83612 -36.23769 -34.41196 -32.45386 -31.70027 -30.69980 -28.89068 -26.54647 -24.63994 -23.87944 -22.95006 -21.84850 -21.27772 -18.90620 -18.41503 -17.53545 -17.12426 -16.56960 -16.56426 -16.42206 -15.96837 -15.83126 -15.19764 -14.95039 -14.40739 -14.14009 -13.96361 -13.87806 -13.64889 -13.27090 -13.15622 -12.87840 -12.83763 -12.63138 -12.37709 -12.22110 -12.15356 -11.94399 -11.72901 -11.38398 -11.35430 -11.16709 -10.68969 -10.54977 -9.73894 -8.30443 -8.18233 -6.30853 0.30316 0.54129 1.40537 1.41880 1.52959 2.09079 2.41665 2.78681 3.13790 3.39092 3.83406 3.92858 4.10751 4.15542 4.21851 4.24650 4.40448 4.47163 4.48460 4.51594 4.59847 4.65374 4.80947 4.91904 4.93431 4.96757 5.08926 5.17301 5.22574 5.28903 5.30848 5.33383 5.39395 5.54086 5.56881 5.77808 5.87948 5.90897 6.25921 6.32806 6.51155 6.87445 7.38899 8.92479 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.003489 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.876066 B = 8024.020387 C = 8627.341372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.622 5.622 4 C 0.130 3.870 5 C -0.122 4.122 6 C -0.095 4.095 7 C 0.023 3.977 8 C -0.542 4.542 9 H 0.063 0.937 10 C -0.003 4.003 11 N -0.936 5.936 12 Si 0.965 3.035 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.261 1.261 16 C 0.238 3.762 17 C -0.219 4.219 18 C -0.043 4.043 19 C -0.223 4.223 20 C 0.125 3.875 21 F -0.149 7.149 22 C -0.246 4.246 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.056 0.944 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.263 0.737 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 -0.759 13.873 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.013 4.013 3 N -0.330 5.330 4 C 0.008 3.992 5 C -0.161 4.161 6 C -0.133 4.133 7 C -0.015 4.015 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.201 4.201 11 N -0.576 5.576 12 Si 0.789 3.211 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.185 1.185 16 C 0.134 3.866 17 C -0.241 4.241 18 C -0.062 4.062 19 C -0.244 4.244 20 C 0.106 3.894 21 F -0.128 7.128 22 C -0.270 4.270 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.426 -0.957 13.706 20.657 hybrid contribution 0.742 -0.002 -0.541 0.919 sum -14.683 -0.959 13.164 19.744 Atomic orbital electron populations 1.22141 0.95110 1.02865 1.02004 1.21590 0.94896 0.81589 1.03255 1.46859 1.69827 1.13783 1.02542 1.21500 0.95200 0.98099 0.84440 1.21907 0.97294 1.00092 0.96847 1.21367 0.96755 0.99550 0.95616 1.19020 0.93068 0.94688 0.94676 1.21755 0.97216 1.31469 1.07595 0.91909 1.26021 0.96087 0.96273 1.01698 1.70114 1.03566 1.42717 1.41239 0.85445 0.78257 0.78437 0.78913 1.19770 1.20917 1.18499 1.17700 0.91721 0.91411 0.85756 1.21052 1.08781 0.94406 0.99862 1.21028 0.94465 1.00290 0.90386 1.21087 1.08814 0.93980 1.00484 1.17587 0.99699 0.91727 0.80418 1.91451 1.92501 1.82384 1.46415 1.20607 1.13915 1.02339 0.90109 0.93096 0.92532 0.90167 0.90152 0.90440 0.89297 0.89843 0.93545 0.93182 0.92500 0.92548 0.99586 0.99520 0.92862 0.84983 0.82886 0.83764 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.24 71.98 0.74 -1.80 16 2 C 0.11 2.05 5.88 86.38 0.51 2.56 16 3 N -0.62 -14.31 2.61 -697.34 -1.82 -16.13 16 4 C 0.13 3.14 5.16 86.38 0.45 3.58 16 5 C -0.12 -3.91 5.54 30.59 0.17 -3.74 16 6 C -0.09 -3.67 5.15 30.59 0.16 -3.52 16 7 C 0.02 1.19 4.97 29.85 0.15 1.34 16 8 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 9 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 10 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 11 N -0.94 -57.57 13.29 21.44 0.28 -57.29 16 12 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 16 C 0.24 5.85 6.55 38.21 0.25 6.10 16 17 C -0.22 -5.21 9.21 22.41 0.21 -5.01 16 18 C -0.04 -0.90 10.04 22.24 0.22 -0.68 16 19 C -0.22 -4.80 10.02 22.34 0.22 -4.57 16 20 C 0.13 3.03 7.30 22.36 0.16 3.19 16 21 F -0.15 -3.69 17.27 44.97 0.78 -2.91 16 22 C -0.25 -5.86 9.18 22.44 0.21 -5.65 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 27 H 0.08 1.39 6.20 -2.39 -0.01 1.37 16 28 H 0.09 1.90 8.07 -2.39 -0.02 1.88 16 29 H 0.08 1.89 6.20 -2.38 -0.01 1.88 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 37 H 0.13 3.09 6.14 -2.91 -0.02 3.07 16 38 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.14 2.96 6.14 -2.92 -0.02 2.94 16 Total: -1.00 -65.37 334.08 6.41 -58.97 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.00 Total: 9.72 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 4.13 Total: -38.50 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -1.53 Total: -73.42 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.37 6.41 -58.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395387635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.964 kcal (2) G-P(sol) polarization free energy of solvation -65.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds