Wall clock time and date at job start Mon Mar 30 2020 08:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.54868 * 2 1 4 4 C 1.52995 * 117.50090 * 145.66768 * 2 1 3 5 5 C 1.50706 * 117.50176 * 215.00671 * 4 2 1 6 6 O 1.21285 * 119.99629 * 249.16258 * 5 4 2 7 7 N 1.34772 * 120.00056 * 69.16090 * 5 4 2 8 8 C 1.47429 * 125.64768 * 359.69869 * 7 5 4 9 9 C 1.55123 * 104.71970 * 155.81487 * 8 7 5 10 10 C 1.55161 * 101.48917 * 37.29207 * 9 8 7 11 11 H 1.09004 * 110.86809 * 82.76415 * 10 9 8 12 12 C 1.50702 * 110.72218 * 205.96705 * 10 9 8 13 13 H 1.07998 * 120.00139 * 113.52138 * 12 10 9 14 14 C 1.37880 * 120.00156 * 293.52408 * 12 10 9 15 15 N 1.31517 * 119.99601 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00058 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47023 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46793 * 119.99862 * 16 14 12 19 19 H 1.48497 * 109.46850 * 239.99893 * 16 14 12 20 20 C 1.47022 * 125.64533 * 180.02562 * 7 5 4 21 21 C 1.52994 * 60.00166 * 107.49306 * 4 2 1 22 22 C 1.53001 * 117.49855 * 252.51504 * 21 4 2 23 23 C 1.52994 * 117.50034 * 107.48828 * 21 4 2 24 24 H 1.08995 * 109.46925 * 325.71908 * 1 2 3 25 25 H 1.09006 * 109.46650 * 205.72198 * 1 2 3 26 26 H 1.08996 * 109.47217 * 85.72265 * 1 2 3 27 27 H 1.09002 * 109.46785 * 53.93353 * 3 2 1 28 28 H 1.08997 * 109.47349 * 173.92951 * 3 2 1 29 29 H 1.08994 * 109.47134 * 293.93470 * 3 2 1 30 30 H 1.09005 * 117.49846 * 0.02562 * 4 2 1 31 31 H 1.08995 * 110.36487 * 274.74343 * 8 7 5 32 32 H 1.08997 * 110.36777 * 37.06833 * 8 7 5 33 33 H 1.08998 * 111.19615 * 279.18899 * 9 8 7 34 34 H 1.09000 * 110.94009 * 155.28448 * 9 8 7 35 35 H 0.97010 * 119.99530 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.88379 * 300.44244 * 20 7 5 37 37 H 1.09000 * 109.88057 * 61.60997 * 20 7 5 38 38 H 1.09004 * 109.47274 * 128.62053 * 22 21 4 39 39 H 1.08998 * 109.46743 * 248.61327 * 22 21 4 40 40 H 1.08994 * 109.47377 * 8.61833 * 22 21 4 41 41 H 1.08995 * 109.47336 * 351.38267 * 23 21 4 42 42 H 1.09006 * 109.47255 * 111.38269 * 23 21 4 43 43 H 1.09004 * 109.47381 * 231.37812 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1206 0.7654 5 6 3.5290 -0.7804 1.4616 6 8 4.5763 -1.2347 1.0520 7 7 3.5212 0.0287 2.5394 8 6 2.3264 0.6525 3.1368 9 6 2.7207 0.9267 4.6118 10 6 4.2086 1.3404 4.4622 11 1 4.2937 2.3932 4.1929 12 6 4.9721 1.0528 5.7293 13 1 5.7455 0.2990 5.7344 14 6 4.6832 1.7519 6.8820 15 7 3.7410 2.6694 6.8759 16 14 5.6291 1.3948 8.4528 17 1 6.6273 0.3256 8.1972 18 1 6.3264 2.6268 8.9015 19 1 4.6850 0.9480 9.5083 20 6 4.7035 0.4409 3.3100 21 6 2.2365 -1.1212 -0.7646 22 6 1.3589 -2.1566 -1.4707 23 6 3.5490 -0.7763 -1.4711 24 1 -0.3633 0.8491 0.5788 25 1 -0.3633 -0.9259 0.4460 26 1 -0.3633 0.0766 -1.0248 27 1 1.8007 1.9691 0.8307 28 1 3.2685 1.2675 0.1087 29 1 1.9704 1.8880 -0.9392 30 1 1.6113 -1.8582 1.2686 31 1 2.0896 1.5854 2.6253 32 1 1.4788 -0.0314 3.0920 33 1 2.6247 0.0268 5.2192 34 1 2.1286 1.7416 5.0283 35 1 3.5379 3.1615 7.6869 36 1 5.2064 -0.4371 3.7152 37 1 5.3865 0.9998 2.6703 38 1 0.7296 -1.6576 -2.2076 39 1 1.9923 -2.8894 -1.9705 40 1 0.7296 -2.6604 -0.7371 41 1 4.2752 -0.4258 -0.7378 42 1 3.9368 -1.6640 -1.9709 43 1 3.3701 0.0066 -2.2082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397573199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:48 Heat of formation + Delta-G solvation = -26.396565 kcal Electronic energy + Delta-G solvation = -21288.553095 eV Core-core repulsion = 18333.849347 eV Total energy + Delta-G solvation = -2954.703748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47851 -38.05079 -36.48907 -33.02805 -31.20961 -30.34485 -28.72679 -28.35062 -27.91958 -26.24815 -24.96063 -22.70623 -21.28474 -19.59444 -18.17225 -17.80391 -16.79262 -16.23475 -15.63880 -15.11411 -14.77586 -14.54542 -14.04526 -13.47842 -13.32382 -12.82702 -12.68506 -12.53988 -12.51653 -12.32492 -12.26264 -12.05865 -11.86349 -11.69593 -11.69351 -11.24348 -11.17217 -11.02309 -10.79404 -10.72674 -10.46774 -9.83730 -9.64287 -9.58466 -9.45245 -9.04864 -8.94622 -8.49172 -7.91207 -6.11586 -4.14368 3.03755 3.25958 3.34412 3.38209 3.43496 3.74425 4.38451 4.60255 4.64620 4.71708 5.03385 5.10533 5.21276 5.29165 5.48330 5.54979 5.64734 5.65180 5.71340 5.81825 5.85471 5.91782 5.92636 5.96691 6.00589 6.02500 6.06070 6.13177 6.21605 6.28758 6.33529 6.38088 6.59138 6.66604 6.87454 7.01934 7.13012 7.45119 7.69973 7.87643 8.19298 8.28610 8.70200 8.87931 9.50575 10.98447 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036339 B = 0.004717 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.345226 B = 5935.096818 C = 6292.389833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.120 4.120 4 C -0.166 4.166 5 C 0.552 3.448 6 O -0.551 6.551 7 N -0.603 5.603 8 C 0.095 3.905 9 C -0.111 4.111 10 C 0.044 3.956 11 H 0.042 0.958 12 C -0.514 4.514 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.110 3.890 21 C -0.092 4.092 22 C -0.112 4.112 23 C -0.125 4.125 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 -4.025 -13.461 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.104 4.104 3 C -0.177 4.177 4 C -0.187 4.187 5 C 0.340 3.660 6 O -0.430 6.430 7 N -0.335 5.335 8 C -0.027 4.027 9 C -0.150 4.150 10 C 0.025 3.975 11 H 0.060 0.940 12 C -0.552 4.552 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.011 4.011 21 C -0.092 4.092 22 C -0.169 4.169 23 C -0.182 4.182 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.871 -4.176 -13.608 16.265 hybrid contribution 0.341 -0.196 1.093 1.162 sum -7.530 -4.372 -12.515 15.246 Atomic orbital electron populations 1.21323 0.91749 1.02162 1.01772 1.21727 0.94711 0.91240 1.02708 1.21445 1.00549 0.93859 1.01852 1.22649 0.97859 1.03367 0.94843 1.19185 0.89280 0.78100 0.79405 1.90619 1.33231 1.53936 1.65254 1.48688 1.10559 1.46186 1.28044 1.22612 0.87183 0.96449 0.96486 1.22814 1.00018 1.01368 0.90783 1.19717 0.91699 0.94475 0.91594 0.94002 1.21085 1.19381 1.20955 0.93811 0.92256 1.24948 0.95090 0.94751 0.98908 1.69956 1.30753 1.23734 1.28244 0.86518 0.79945 0.78251 0.83227 1.19693 1.20957 1.21004 1.22335 0.86708 0.98976 0.93094 1.21635 0.98000 0.98670 0.90905 1.21334 0.98560 0.97136 0.99853 1.21556 0.95069 1.01077 1.00506 0.91851 0.92375 0.92112 0.91448 0.92169 0.92185 0.85952 0.92120 0.92353 0.92281 0.90132 0.92959 0.92172 0.93420 0.92085 0.92106 0.92469 0.90006 0.92444 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 8.88 37.16 0.33 -0.76 16 2 C -0.10 -1.25 2.45 -154.51 -0.38 -1.63 16 3 C -0.12 -1.53 7.87 37.16 0.29 -1.24 16 4 C -0.17 -2.41 4.40 -91.77 -0.40 -2.81 16 5 C 0.55 10.26 5.19 -10.98 -0.06 10.20 16 6 O -0.55 -11.88 14.89 5.55 0.08 -11.80 16 7 N -0.60 -11.58 3.22 -170.38 -0.55 -12.13 16 8 C 0.10 1.67 5.90 -2.41 -0.01 1.65 16 9 C -0.11 -2.38 5.96 -24.46 -0.15 -2.53 16 10 C 0.04 1.05 2.78 -89.93 -0.25 0.80 16 11 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 12 C -0.51 -13.64 8.47 -34.44 -0.29 -13.93 16 13 H 0.06 1.59 7.53 -52.49 -0.40 1.19 16 14 C 0.07 1.74 5.36 -17.82 -0.10 1.64 16 15 N -0.89 -24.34 12.50 55.43 0.69 -23.65 16 16 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.11 2.41 6.45 -3.06 -0.02 2.39 16 21 C -0.09 -1.16 2.69 -154.51 -0.42 -1.57 16 22 C -0.11 -1.11 8.88 37.16 0.33 -0.78 16 23 C -0.13 -1.70 8.22 37.15 0.31 -1.40 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.06 0.53 7.77 -51.93 -0.40 0.12 16 26 H 0.06 0.51 8.02 -51.93 -0.42 0.10 16 27 H 0.07 0.86 6.27 -51.93 -0.33 0.53 16 28 H 0.06 0.91 5.84 -51.93 -0.30 0.60 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.64 7.96 -51.93 -0.41 1.22 16 31 H 0.06 0.99 6.09 -51.93 -0.32 0.68 16 32 H 0.06 0.90 7.69 -51.93 -0.40 0.50 16 33 H 0.06 1.32 8.04 -51.93 -0.42 0.91 16 34 H 0.08 1.81 7.77 -51.93 -0.40 1.41 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.06 1.39 7.63 -51.93 -0.40 1.00 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.52 8.02 -51.93 -0.42 0.11 16 39 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 40 H 0.06 0.53 7.77 -51.93 -0.40 0.13 16 41 H 0.08 1.36 4.51 -51.93 -0.23 1.13 16 42 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -28.64 330.69 -7.94 -36.58 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.31 Total: 0.22 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.82 Total: -9.97 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.14 Total: -35.78 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.64 -7.94 -36.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397573199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.182 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds