Wall clock time and date at job start Mon Mar 30 2020 08:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.54868 * 2 1 4 4 C 1.52995 * 117.50090 * 145.66768 * 2 1 3 5 5 C 1.50706 * 117.50176 * 215.00671 * 4 2 1 6 6 O 1.21285 * 119.99629 * 249.16258 * 5 4 2 7 7 N 1.34772 * 120.00056 * 69.16090 * 5 4 2 8 8 C 1.47429 * 125.64768 * 359.69869 * 7 5 4 9 9 C 1.55123 * 104.71970 * 155.81487 * 8 7 5 10 10 C 1.55161 * 101.48917 * 37.29207 * 9 8 7 11 11 H 1.09004 * 110.86809 * 82.76415 * 10 9 8 12 12 C 1.50702 * 110.72218 * 205.96705 * 10 9 8 13 13 H 1.07998 * 120.00139 * 113.52138 * 12 10 9 14 14 C 1.37880 * 120.00156 * 293.52408 * 12 10 9 15 15 N 1.31517 * 119.99601 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00058 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47023 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46793 * 119.99862 * 16 14 12 19 19 H 1.48497 * 109.46850 * 239.99893 * 16 14 12 20 20 C 1.47022 * 125.64533 * 180.02562 * 7 5 4 21 21 C 1.52994 * 60.00166 * 107.49306 * 4 2 1 22 22 C 1.53001 * 117.49855 * 252.51504 * 21 4 2 23 23 C 1.52994 * 117.50034 * 107.48828 * 21 4 2 24 24 H 1.08995 * 109.46925 * 325.71908 * 1 2 3 25 25 H 1.09006 * 109.46650 * 205.72198 * 1 2 3 26 26 H 1.08996 * 109.47217 * 85.72265 * 1 2 3 27 27 H 1.09002 * 109.46785 * 53.93353 * 3 2 1 28 28 H 1.08997 * 109.47349 * 173.92951 * 3 2 1 29 29 H 1.08994 * 109.47134 * 293.93470 * 3 2 1 30 30 H 1.09005 * 117.49846 * 0.02562 * 4 2 1 31 31 H 1.08995 * 110.36487 * 274.74343 * 8 7 5 32 32 H 1.08997 * 110.36777 * 37.06833 * 8 7 5 33 33 H 1.08998 * 111.19615 * 279.18899 * 9 8 7 34 34 H 1.09000 * 110.94009 * 155.28448 * 9 8 7 35 35 H 0.97010 * 119.99530 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.88379 * 300.44244 * 20 7 5 37 37 H 1.09000 * 109.88057 * 61.60997 * 20 7 5 38 38 H 1.09004 * 109.47274 * 128.62053 * 22 21 4 39 39 H 1.08998 * 109.46743 * 248.61327 * 22 21 4 40 40 H 1.08994 * 109.47377 * 8.61833 * 22 21 4 41 41 H 1.08995 * 109.47336 * 351.38267 * 23 21 4 42 42 H 1.09006 * 109.47255 * 111.38269 * 23 21 4 43 43 H 1.09004 * 109.47381 * 231.37812 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1206 0.7654 5 6 3.5290 -0.7804 1.4616 6 8 4.5763 -1.2347 1.0520 7 7 3.5212 0.0287 2.5394 8 6 2.3264 0.6525 3.1368 9 6 2.7207 0.9267 4.6118 10 6 4.2086 1.3404 4.4622 11 1 4.2937 2.3932 4.1929 12 6 4.9721 1.0528 5.7293 13 1 5.7455 0.2990 5.7344 14 6 4.6832 1.7519 6.8820 15 7 3.7410 2.6694 6.8759 16 14 5.6291 1.3948 8.4528 17 1 6.6273 0.3256 8.1972 18 1 6.3264 2.6268 8.9015 19 1 4.6850 0.9480 9.5083 20 6 4.7035 0.4409 3.3100 21 6 2.2365 -1.1212 -0.7646 22 6 1.3589 -2.1566 -1.4707 23 6 3.5490 -0.7763 -1.4711 24 1 -0.3633 0.8491 0.5788 25 1 -0.3633 -0.9259 0.4460 26 1 -0.3633 0.0766 -1.0248 27 1 1.8007 1.9691 0.8307 28 1 3.2685 1.2675 0.1087 29 1 1.9704 1.8880 -0.9392 30 1 1.6113 -1.8582 1.2686 31 1 2.0896 1.5854 2.6253 32 1 1.4788 -0.0314 3.0920 33 1 2.6247 0.0268 5.2192 34 1 2.1286 1.7416 5.0283 35 1 3.5379 3.1615 7.6869 36 1 5.2064 -0.4371 3.7152 37 1 5.3865 0.9998 2.6703 38 1 0.7296 -1.6576 -2.2076 39 1 1.9923 -2.8894 -1.9705 40 1 0.7296 -2.6604 -0.7371 41 1 4.2752 -0.4258 -0.7378 42 1 3.9368 -1.6640 -1.9709 43 1 3.3701 0.0066 -2.2082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397573199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:47 Heat of formation + Delta-G solvation = -41.476871 kcal Electronic energy + Delta-G solvation = -21289.207026 eV Core-core repulsion = 18333.849347 eV Total energy + Delta-G solvation = -2955.357679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74289 -39.44580 -38.07860 -34.97017 -32.40058 -31.85084 -30.12959 -29.51619 -29.12081 -27.14543 -26.78889 -24.26040 -22.65967 -21.40238 -19.61754 -18.81240 -18.58860 -17.72141 -17.07068 -16.60651 -16.48364 -15.82194 -15.35567 -14.73336 -14.49092 -14.40187 -14.15611 -13.90502 -13.58285 -13.38523 -13.26762 -13.07789 -13.06281 -12.99427 -12.94942 -12.87623 -12.73493 -12.60371 -12.50340 -12.28675 -11.69208 -11.62322 -11.39024 -10.97684 -10.87258 -10.60730 -10.51328 -10.23264 -9.51445 -8.17690 -6.26635 1.39989 1.43032 1.53727 1.61201 2.05904 2.42833 2.62332 3.14395 3.50419 3.64781 3.66935 3.98424 4.08338 4.16480 4.20479 4.38079 4.42643 4.45549 4.59254 4.67388 4.74414 4.77558 4.80191 4.83296 4.94684 5.02335 5.03748 5.07048 5.11334 5.12544 5.17448 5.20943 5.27852 5.34424 5.37580 5.44899 5.56429 5.59589 5.75284 5.85690 6.27012 6.68272 6.79331 7.20803 7.40940 8.91906 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036339 B = 0.004717 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.345226 B = 5935.096818 C = 6292.389833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.185 4.185 5 C 0.550 3.450 6 O -0.587 6.587 7 N -0.606 5.606 8 C 0.110 3.890 9 C -0.102 4.102 10 C 0.041 3.959 11 H 0.019 0.981 12 C -0.536 4.536 13 H 0.048 0.952 14 C 0.024 3.976 15 N -0.911 5.911 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.277 1.277 20 C 0.121 3.879 21 C -0.089 4.089 22 C -0.108 4.108 23 C -0.125 4.125 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.264 0.736 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 -4.531 -14.487 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.178 4.178 4 C -0.206 4.206 5 C 0.340 3.660 6 O -0.469 6.469 7 N -0.338 5.338 8 C -0.012 4.012 9 C -0.141 4.141 10 C 0.022 3.978 11 H 0.037 0.963 12 C -0.574 4.574 13 H 0.066 0.934 14 C -0.176 4.176 15 N -0.549 5.549 16 Si 0.778 3.222 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.001 4.001 21 C -0.090 4.090 22 C -0.165 4.165 23 C -0.182 4.182 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.157 0.843 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.184 -4.683 -14.643 18.441 hybrid contribution 1.133 -0.007 1.368 1.777 sum -9.051 -4.691 -13.275 16.738 Atomic orbital electron populations 1.21369 0.89089 1.03031 1.03249 1.21854 0.96336 0.90006 1.00466 1.21453 0.98650 0.94765 1.02975 1.22686 0.96234 1.05738 0.95924 1.19981 0.90547 0.76783 0.78645 1.90596 1.35223 1.55077 1.66027 1.48724 1.09944 1.46759 1.28375 1.22553 0.87196 0.97919 0.93495 1.22589 0.98040 1.00122 0.93365 1.19609 0.93465 0.93426 0.91333 0.96269 1.21345 1.19724 1.21045 0.95330 0.93363 1.25610 0.95898 0.94561 1.01563 1.70036 1.31593 1.24224 1.29082 0.85586 0.78756 0.78055 0.79753 1.19793 1.20428 1.20265 1.21967 0.87788 0.97618 0.92766 1.21809 0.97911 0.99695 0.89544 1.21356 0.98371 0.96471 1.00290 1.21505 0.95073 1.01583 1.00017 0.91301 0.91311 0.90273 0.91379 0.95194 0.90207 0.84287 0.90527 0.89223 0.93637 0.91244 0.92697 0.94186 0.94130 0.90058 0.92108 0.91373 0.93558 0.92259 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 8.88 71.98 0.64 -0.99 16 2 C -0.09 -1.83 2.45 -52.18 -0.13 -1.96 16 3 C -0.12 -2.87 7.87 71.98 0.57 -2.30 16 4 C -0.19 -4.99 4.40 -11.54 -0.05 -5.04 16 5 C 0.55 20.43 5.19 87.66 0.45 20.89 16 6 O -0.59 -26.09 14.89 -3.05 -0.05 -26.13 16 7 N -0.61 -23.44 3.22 -811.36 -2.61 -26.05 16 8 C 0.11 3.73 5.90 86.93 0.51 4.24 16 9 C -0.10 -4.43 5.96 32.06 0.19 -4.23 16 10 C 0.04 2.01 2.78 -10.35 -0.03 1.98 16 11 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 12 C -0.54 -29.33 8.47 25.60 0.22 -29.11 16 13 H 0.05 2.68 7.53 -2.91 -0.02 2.65 16 14 C 0.02 1.28 5.36 84.65 0.45 1.74 16 15 N -0.91 -50.37 12.50 21.45 0.27 -50.11 16 16 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 C 0.12 5.53 6.45 86.73 0.56 6.09 16 21 C -0.09 -2.03 2.69 -52.19 -0.14 -2.17 16 22 C -0.11 -1.75 8.88 71.98 0.64 -1.11 16 23 C -0.12 -3.28 8.22 71.98 0.59 -2.69 16 24 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 25 H 0.07 0.91 7.77 -2.38 -0.02 0.89 16 26 H 0.08 0.92 8.02 -2.39 -0.02 0.91 16 27 H 0.07 1.58 6.27 -2.39 -0.01 1.57 16 28 H 0.03 0.88 5.84 -2.39 -0.01 0.87 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.14 3.29 7.96 -2.38 -0.02 3.27 16 31 H 0.08 2.38 6.09 -2.39 -0.01 2.37 16 32 H 0.09 2.52 7.69 -2.39 -0.02 2.51 16 33 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 34 H 0.07 3.14 7.77 -2.39 -0.02 3.12 16 35 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 36 H 0.04 1.95 7.63 -2.39 -0.02 1.93 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.02 8.02 -2.38 -0.02 1.00 16 39 H 0.06 0.99 7.92 -2.39 -0.02 0.97 16 40 H 0.07 0.98 7.77 -2.39 -0.02 0.96 16 41 H 0.05 1.57 4.51 -2.39 -0.01 1.56 16 42 H 0.06 1.49 7.92 -2.38 -0.02 1.47 16 43 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -63.66 330.69 5.09 -58.57 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.97 Total: 13.40 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.48 Total: -14.67 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -2.34 Total: -76.16 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -63.66 5.09 -58.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397573199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.095 kcal (2) G-P(sol) polarization free energy of solvation -63.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds