Wall clock time and date at job start Mon Mar 30 2020 07:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00253 * 2 1 4 4 H 1.48502 * 109.47151 * 269.99949 * 3 2 1 5 5 H 1.48502 * 109.47200 * 29.99960 * 3 2 1 6 6 H 1.48496 * 109.47216 * 149.99938 * 3 2 1 7 7 C 1.37882 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99865 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99959 * 179.72677 * 7 2 1 10 10 H 1.08994 * 110.64377 * 61.68400 * 9 7 2 11 11 C 1.55157 * 110.71555 * 298.54363 * 9 7 2 12 12 C 1.54914 * 101.57828 * 206.13625 * 11 9 7 13 13 N 1.47426 * 104.83298 * 37.01105 * 12 11 9 14 14 C 1.34774 * 125.65280 * 155.82825 * 13 12 11 15 15 O 1.21287 * 119.99650 * 355.13344 * 14 13 12 16 16 C 1.50692 * 120.00521 * 175.14104 * 14 13 12 17 17 C 1.54236 * 108.89878 * 268.19646 * 16 14 13 18 18 C 1.50548 * 108.48878 * 159.17610 * 17 16 14 19 19 C 1.54062 * 112.41575 * 94.26721 * 18 17 16 20 20 C 1.54068 * 112.81788 * 318.27980 * 19 18 17 21 21 C 1.50475 * 112.49360 * 318.28708 * 20 19 18 22 22 C 1.45548 * 108.90005 * 145.40292 * 16 14 13 23 23 C 1.47032 * 108.70261 * 335.86962 * 13 12 11 24 24 H 0.97003 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.09002 * 111.00644 * 324.20718 * 11 9 7 26 26 H 1.08994 * 111.00681 * 88.02822 * 11 9 7 27 27 H 1.09001 * 110.36496 * 155.84702 * 12 11 9 28 28 H 1.08999 * 110.36713 * 278.05922 * 12 11 9 29 29 H 1.09007 * 108.87436 * 26.79965 * 16 14 13 30 30 H 1.09002 * 109.62810 * 278.97370 * 17 16 14 31 31 H 1.09004 * 109.62513 * 39.55118 * 17 16 14 32 32 H 1.08998 * 108.92240 * 333.51173 * 18 17 16 33 33 H 1.09000 * 108.83940 * 214.96223 * 18 17 16 34 34 H 1.09004 * 108.81674 * 197.42388 * 19 18 17 35 35 H 1.09003 * 108.72963 * 79.08392 * 19 18 17 36 36 H 1.09003 * 108.88104 * 197.50706 * 20 19 18 37 37 H 1.09006 * 108.87420 * 79.05945 * 20 19 18 38 38 H 1.09001 * 109.62950 * 334.44108 * 21 20 19 39 39 H 1.09001 * 109.62443 * 213.85776 * 21 20 19 40 40 H 1.08998 * 108.89209 * 303.44528 * 22 16 14 41 41 H 1.08998 * 108.88900 * 62.03104 * 22 16 14 42 42 H 1.08994 * 109.88068 * 241.64590 * 23 13 12 43 43 H 1.08997 * 109.87693 * 120.47650 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0068 10 1 3.8995 -0.7086 0.8886 11 6 4.0551 -0.5032 -1.2852 12 6 5.4388 -1.1821 -1.4412 13 7 5.2217 -2.5806 -1.0283 14 6 5.9669 -3.6369 -1.4094 15 8 6.8535 -3.4912 -2.2241 16 6 5.6985 -4.9991 -0.8235 17 6 6.5874 -5.1910 0.4223 18 6 5.9823 -6.2713 1.2787 19 6 6.5867 -7.6584 0.9888 20 6 6.7919 -7.9181 -0.5159 21 6 5.6343 -7.4345 -1.3467 22 6 5.9490 -6.0081 -1.8421 23 6 4.0569 -2.6323 -0.1325 24 1 -0.4850 0.8401 0.0004 25 1 3.4177 -0.7135 -2.1441 26 1 4.1612 0.5709 -1.1338 27 1 5.7672 -1.1398 -2.4797 28 1 6.1719 -0.7027 -0.7925 29 1 4.6523 -5.0536 -0.5224 30 1 7.5909 -5.4847 0.1144 31 1 6.6324 -4.2597 0.9869 32 1 4.9087 -6.3088 1.0941 33 1 6.1510 -6.0252 2.3271 34 1 5.9210 -8.4228 1.3898 35 1 7.5503 -7.7326 1.4930 36 1 6.9171 -8.9892 -0.6751 37 1 7.6978 -7.4068 -0.8417 38 1 4.7289 -7.4199 -0.7399 39 1 5.4952 -8.0965 -2.2014 40 1 5.3296 -5.7921 -2.7126 41 1 6.9977 -5.9610 -2.1352 42 1 4.3591 -3.0012 0.8476 43 1 3.2921 -3.2831 -0.5563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397580968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:31 Heat of formation + Delta-G solvation = -59.207510 kcal Electronic energy + Delta-G solvation = -21107.869875 eV Core-core repulsion = 18151.743339 eV Total energy + Delta-G solvation = -2956.126537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29335 -38.23285 -36.78461 -33.02734 -32.58598 -32.19336 -30.74979 -28.73281 -25.62975 -24.94206 -24.64399 -22.49386 -20.70598 -19.98114 -19.37003 -18.65871 -17.23265 -16.67707 -15.98347 -15.49427 -14.91783 -14.57700 -14.39609 -14.25269 -13.52659 -13.30027 -13.07264 -12.91728 -12.80662 -12.50181 -12.25832 -12.15508 -11.92331 -11.59589 -11.21887 -10.95089 -10.86579 -10.75219 -10.66226 -10.60211 -10.41013 -10.32671 -10.19223 -9.99700 -9.67365 -9.26433 -9.19433 -8.66475 -8.13438 -6.18672 -4.19797 2.97112 3.21119 3.30129 3.31288 3.43634 4.31570 4.55138 4.58932 4.74358 4.96760 5.05182 5.10560 5.11399 5.20151 5.27760 5.36215 5.46424 5.52421 5.66683 5.69801 5.75597 5.83413 5.88689 5.95637 5.99134 6.05903 6.07967 6.11240 6.12140 6.16988 6.24729 6.30806 6.37815 6.41512 6.51075 6.66562 6.76285 6.79748 7.29559 7.58110 8.01918 8.36040 8.54330 8.82676 9.42450 10.94030 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.004852 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.549375 B = 5769.150910 C = 6168.487096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.009 3.991 10 H 0.042 0.958 11 C -0.142 4.142 12 C 0.105 3.895 13 N -0.612 5.612 14 C 0.526 3.474 15 O -0.560 6.560 16 C -0.096 4.096 17 C -0.101 4.101 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.107 4.107 23 C 0.113 3.887 24 H 0.266 0.734 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.718 -11.873 1.152 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.127 4.127 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.095 0.905 9 C -0.011 4.011 10 H 0.060 0.940 11 C -0.181 4.181 12 C -0.018 4.018 13 N -0.344 5.344 14 C 0.315 3.685 15 O -0.439 6.439 16 C -0.118 4.118 17 C -0.139 4.139 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.009 4.009 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.051 -11.744 0.709 16.842 hybrid contribution 0.225 1.097 0.000 1.120 sum 12.276 -10.647 0.709 16.265 Atomic orbital electron populations 1.69886 1.06290 1.27162 1.50038 1.24948 0.94654 0.99000 0.94131 0.86933 0.80001 0.83676 0.78528 1.20185 1.21958 1.18960 1.20866 0.87777 0.94767 1.51851 0.90478 1.20210 0.97278 0.90115 0.93483 0.93982 1.23263 0.94134 0.98716 1.01942 1.22237 0.98422 0.81385 0.99718 1.48725 1.30594 1.07224 1.47903 1.20427 0.81110 0.85612 0.81329 1.90633 1.33310 1.85552 1.34413 1.20248 1.02157 0.92169 0.97180 1.21238 0.99036 0.99070 0.94543 1.21352 1.00766 0.94057 0.99440 1.21914 1.00663 0.96783 0.95993 1.21368 0.99003 1.00507 0.94883 1.21308 0.98797 0.95732 0.99378 1.20356 1.03119 0.93511 0.97491 1.22242 0.85842 1.00927 0.91871 0.92456 0.90373 0.91899 0.91416 0.92358 0.89253 0.91005 0.91566 0.91560 0.91950 0.92331 0.92489 0.92548 0.91972 0.91419 0.91801 0.92082 0.90926 0.92598 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.96 55.43 0.77 -25.46 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.88 20.61 24.50 -169.99 -4.16 16.45 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.88 6.48 56.52 0.37 -5.51 16 7 C -0.51 -13.44 9.08 -34.44 -0.31 -13.75 16 8 H 0.08 2.17 7.82 -52.48 -0.41 1.76 16 9 C 0.01 0.18 2.35 -89.94 -0.21 -0.03 16 10 H 0.04 0.92 7.35 -51.93 -0.38 0.54 16 11 C -0.14 -2.90 5.20 -24.58 -0.13 -3.02 16 12 C 0.10 1.93 6.93 -2.53 -0.02 1.91 16 13 N -0.61 -11.19 3.33 -170.52 -0.57 -11.76 16 14 C 0.53 9.29 6.65 -10.99 -0.07 9.21 16 15 O -0.56 -11.43 16.39 5.55 0.09 -11.34 16 16 C -0.10 -1.32 1.73 -94.64 -0.16 -1.49 16 17 C -0.10 -1.21 4.97 -27.31 -0.14 -1.34 16 18 C -0.12 -1.19 5.32 -27.40 -0.15 -1.33 16 19 C -0.12 -1.02 5.85 -25.62 -0.15 -1.17 16 20 C -0.12 -1.10 5.31 -27.43 -0.15 -1.24 16 21 C -0.11 -1.15 5.61 -27.35 -0.15 -1.30 16 22 C -0.11 -1.36 4.12 -29.60 -0.12 -1.48 16 23 C 0.11 2.10 5.59 -3.06 -0.02 2.08 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.08 1.67 8.04 -51.93 -0.42 1.25 16 26 H 0.06 1.27 5.16 -51.93 -0.27 1.00 16 27 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.21 6.26 -51.93 -0.32 0.88 16 30 H 0.07 0.86 6.97 -51.93 -0.36 0.50 16 31 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 32 H 0.07 0.68 6.63 -51.93 -0.34 0.34 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.61 6.62 -51.93 -0.34 0.26 16 38 H 0.07 0.67 6.98 -51.93 -0.36 0.31 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.83 8.10 -51.93 -0.42 0.40 16 41 H 0.07 0.99 7.08 -51.93 -0.37 0.62 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.31 7.41 -51.93 -0.38 0.93 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -29.45 318.72 -8.28 -37.73 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.35 Total: 0.58 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.87 Total: -11.00 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.21 Total: -37.22 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.16 Total: 16.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.45 -8.28 -37.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397580968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.478 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds