Wall clock time and date at job start Mon Mar 30 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00253 * 2 1 4 4 H 1.48502 * 109.47151 * 269.99949 * 3 2 1 5 5 H 1.48502 * 109.47200 * 29.99960 * 3 2 1 6 6 H 1.48496 * 109.47216 * 149.99938 * 3 2 1 7 7 C 1.37882 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99865 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99959 * 179.72677 * 7 2 1 10 10 H 1.08994 * 110.64377 * 61.68400 * 9 7 2 11 11 C 1.55157 * 110.71555 * 298.54363 * 9 7 2 12 12 C 1.54914 * 101.57828 * 206.13625 * 11 9 7 13 13 N 1.47426 * 104.83298 * 37.01105 * 12 11 9 14 14 C 1.34774 * 125.65280 * 155.82825 * 13 12 11 15 15 O 1.21287 * 119.99650 * 355.13344 * 14 13 12 16 16 C 1.50692 * 120.00521 * 175.14104 * 14 13 12 17 17 C 1.54236 * 108.89878 * 268.19646 * 16 14 13 18 18 C 1.50548 * 108.48878 * 159.17610 * 17 16 14 19 19 C 1.54062 * 112.41575 * 94.26721 * 18 17 16 20 20 C 1.54068 * 112.81788 * 318.27980 * 19 18 17 21 21 C 1.50475 * 112.49360 * 318.28708 * 20 19 18 22 22 C 1.45548 * 108.90005 * 145.40292 * 16 14 13 23 23 C 1.47032 * 108.70261 * 335.86962 * 13 12 11 24 24 H 0.97003 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.09002 * 111.00644 * 324.20718 * 11 9 7 26 26 H 1.08994 * 111.00681 * 88.02822 * 11 9 7 27 27 H 1.09001 * 110.36496 * 155.84702 * 12 11 9 28 28 H 1.08999 * 110.36713 * 278.05922 * 12 11 9 29 29 H 1.09007 * 108.87436 * 26.79965 * 16 14 13 30 30 H 1.09002 * 109.62810 * 278.97370 * 17 16 14 31 31 H 1.09004 * 109.62513 * 39.55118 * 17 16 14 32 32 H 1.08998 * 108.92240 * 333.51173 * 18 17 16 33 33 H 1.09000 * 108.83940 * 214.96223 * 18 17 16 34 34 H 1.09004 * 108.81674 * 197.42388 * 19 18 17 35 35 H 1.09003 * 108.72963 * 79.08392 * 19 18 17 36 36 H 1.09003 * 108.88104 * 197.50706 * 20 19 18 37 37 H 1.09006 * 108.87420 * 79.05945 * 20 19 18 38 38 H 1.09001 * 109.62950 * 334.44108 * 21 20 19 39 39 H 1.09001 * 109.62443 * 213.85776 * 21 20 19 40 40 H 1.08998 * 108.89209 * 303.44528 * 22 16 14 41 41 H 1.08998 * 108.88900 * 62.03104 * 22 16 14 42 42 H 1.08994 * 109.88068 * 241.64590 * 23 13 12 43 43 H 1.08997 * 109.87693 * 120.47650 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0068 10 1 3.8995 -0.7086 0.8886 11 6 4.0551 -0.5032 -1.2852 12 6 5.4388 -1.1821 -1.4412 13 7 5.2217 -2.5806 -1.0283 14 6 5.9669 -3.6369 -1.4094 15 8 6.8535 -3.4912 -2.2241 16 6 5.6985 -4.9991 -0.8235 17 6 6.5874 -5.1910 0.4223 18 6 5.9823 -6.2713 1.2787 19 6 6.5867 -7.6584 0.9888 20 6 6.7919 -7.9181 -0.5159 21 6 5.6343 -7.4345 -1.3467 22 6 5.9490 -6.0081 -1.8421 23 6 4.0569 -2.6323 -0.1325 24 1 -0.4850 0.8401 0.0004 25 1 3.4177 -0.7135 -2.1441 26 1 4.1612 0.5709 -1.1338 27 1 5.7672 -1.1398 -2.4797 28 1 6.1719 -0.7027 -0.7925 29 1 4.6523 -5.0536 -0.5224 30 1 7.5909 -5.4847 0.1144 31 1 6.6324 -4.2597 0.9869 32 1 4.9087 -6.3088 1.0941 33 1 6.1510 -6.0252 2.3271 34 1 5.9210 -8.4228 1.3898 35 1 7.5503 -7.7326 1.4930 36 1 6.9171 -8.9892 -0.6751 37 1 7.6978 -7.4068 -0.8417 38 1 4.7289 -7.4199 -0.7399 39 1 5.4952 -8.0965 -2.2014 40 1 5.3296 -5.7921 -2.7126 41 1 6.9977 -5.9610 -2.1352 42 1 4.3591 -3.0012 0.8476 43 1 3.2921 -3.2831 -0.5563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397580968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:30 Heat of formation + Delta-G solvation = -75.907841 kcal Electronic energy + Delta-G solvation = -21108.594056 eV Core-core repulsion = 18151.743339 eV Total energy + Delta-G solvation = -2956.850718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58683 -39.44281 -38.22101 -34.91784 -33.67475 -33.10081 -32.38222 -30.31395 -27.09209 -26.22126 -25.62531 -23.89508 -21.91366 -21.66711 -20.16192 -19.98604 -19.04148 -18.16547 -17.25996 -16.77285 -16.41753 -15.97154 -15.66740 -15.30364 -14.85053 -14.64214 -14.54608 -14.28139 -13.93330 -13.82992 -13.63390 -13.29581 -13.10796 -12.98024 -12.80679 -12.67126 -12.21367 -11.98931 -11.73048 -11.65939 -11.55938 -11.46758 -11.41861 -11.21112 -11.15405 -11.10193 -10.74445 -10.60653 -9.62718 -8.28782 -6.33781 1.36199 1.39421 1.48488 1.58032 2.03694 2.34997 3.06168 3.40649 3.61955 3.83636 3.88106 3.94253 4.14642 4.19578 4.24227 4.25194 4.35983 4.42458 4.44488 4.45317 4.55623 4.63539 4.72829 4.87503 4.93135 4.95444 5.02417 5.05951 5.11653 5.13775 5.19450 5.21611 5.30214 5.35696 5.38391 5.39424 5.50790 5.55567 5.61388 5.64888 6.26651 6.56300 6.71984 7.11973 7.32099 8.87306 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.004852 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.549375 B = 5769.150910 C = 6168.487096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.019 3.981 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.239 1.239 7 C -0.513 4.513 8 H 0.042 0.958 9 C 0.004 3.996 10 H 0.050 0.950 11 C -0.138 4.138 12 C 0.108 3.892 13 N -0.616 5.616 14 C 0.523 3.477 15 O -0.589 6.589 16 C -0.090 4.090 17 C -0.095 4.095 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.105 4.105 23 C 0.124 3.876 24 H 0.266 0.734 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.592 -12.468 1.993 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.225 1.225 6 H -0.163 1.163 7 C -0.552 4.552 8 H 0.060 0.940 9 C -0.016 4.016 10 H 0.068 0.932 11 C -0.177 4.177 12 C -0.015 4.015 13 N -0.348 5.348 14 C 0.313 3.687 15 O -0.471 6.471 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.143 4.143 23 C 0.002 3.998 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.945 -12.358 1.554 18.698 hybrid contribution -0.396 1.219 -0.296 1.315 sum 13.549 -11.139 1.258 17.585 Atomic orbital electron populations 1.70032 1.08243 1.28085 1.52332 1.25774 0.95284 1.02808 0.94021 0.86002 0.79623 0.78981 0.79149 1.19238 1.22453 1.16263 1.21126 0.90249 0.93354 1.50423 0.93960 1.20159 0.94383 0.92548 0.94476 0.93161 1.23128 0.94969 0.99228 1.00344 1.22222 0.97456 0.81462 1.00352 1.48797 1.30544 1.07541 1.47929 1.21142 0.80277 0.86581 0.80664 1.90616 1.34593 1.86095 1.35753 1.20327 1.02765 0.89957 0.98026 1.21224 0.98767 0.99624 0.93708 1.21340 1.00522 0.94099 0.99503 1.21910 1.01298 0.96181 0.95758 1.21362 0.98061 1.01347 0.94966 1.21282 0.99387 0.93888 1.00004 1.20351 1.02079 0.95065 0.96788 1.22044 0.85781 0.98886 0.93104 0.92508 0.92058 0.91145 0.91356 0.90483 0.88933 0.91009 0.92173 0.91750 0.90950 0.91209 0.91692 0.91014 0.92739 0.91050 0.90789 0.93548 0.92032 0.90187 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.77 13.96 21.45 0.30 -56.47 16 2 C 0.02 1.04 5.46 84.66 0.46 1.50 16 3 Si 0.94 41.72 24.50 68.60 1.68 43.40 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.24 -9.59 6.48 99.48 0.64 -8.95 16 7 C -0.51 -27.07 9.08 25.60 0.23 -26.84 16 8 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 9 C 0.00 0.15 2.35 -10.35 -0.02 0.13 16 10 H 0.05 2.07 7.35 -2.39 -0.02 2.05 16 11 C -0.14 -5.41 5.20 31.99 0.17 -5.25 16 12 C 0.11 3.75 6.93 86.86 0.60 4.35 16 13 N -0.62 -21.65 3.33 -811.78 -2.70 -24.35 16 14 C 0.52 17.93 6.65 87.66 0.58 18.51 16 15 O -0.59 -23.71 16.39 -3.05 -0.05 -23.76 16 16 C -0.09 -2.35 1.73 -13.40 -0.02 -2.38 16 17 C -0.10 -2.10 4.97 30.22 0.15 -1.95 16 18 C -0.12 -2.04 5.32 30.16 0.16 -1.88 16 19 C -0.11 -1.67 5.85 31.31 0.18 -1.49 16 20 C -0.12 -1.89 5.31 30.14 0.16 -1.73 16 21 C -0.11 -1.96 5.61 30.20 0.17 -1.79 16 22 C -0.10 -2.57 4.12 28.74 0.12 -2.45 16 23 C 0.12 4.44 5.59 86.73 0.49 4.92 16 24 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 26 H 0.07 2.64 5.16 -2.39 -0.01 2.63 16 27 H 0.07 2.38 7.99 -2.39 -0.02 2.36 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.09 2.38 6.26 -2.38 -0.01 2.36 16 30 H 0.07 1.59 6.97 -2.39 -0.02 1.57 16 31 H 0.06 1.40 7.97 -2.39 -0.02 1.38 16 32 H 0.06 1.16 6.63 -2.39 -0.02 1.14 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 0.96 6.62 -2.38 -0.02 0.94 16 38 H 0.07 1.26 6.98 -2.39 -0.02 1.24 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.24 8.10 -2.39 -0.02 1.23 16 41 H 0.06 1.64 7.08 -2.39 -0.02 1.62 16 42 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.06 2.27 7.41 -2.39 -0.02 2.25 16 Total: -1.00 -63.62 318.72 3.56 -60.06 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.91 Total: 17.47 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 3.43 Total: -16.34 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.40 Total: -80.82 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.68 Total: 43.40 kcal Total: -63.62 3.56 -60.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397580968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.849 kcal (2) G-P(sol) polarization free energy of solvation -63.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds