Wall clock time and date at job start Mon Mar 30 2020 07:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99672 * 2 1 4 4 H 1.48500 * 109.47148 * 270.00431 * 3 2 1 5 5 H 1.48500 * 109.46872 * 30.00107 * 3 2 1 6 6 H 1.48495 * 109.47113 * 149.99948 * 3 2 1 7 7 C 1.37876 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99889 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.91508 * 303.90065 * 9 7 2 11 11 C 1.55152 * 111.00742 * 67.80188 * 9 7 2 12 12 C 1.54337 * 103.02398 * 153.37891 * 11 9 7 13 13 N 1.47026 * 107.26323 * 338.14681 * 12 11 9 14 14 C 1.34777 * 125.64782 * 178.84930 * 13 12 11 15 15 O 1.21284 * 120.00043 * 354.82305 * 14 13 12 16 16 C 1.50702 * 119.99960 * 175.10089 * 14 13 12 17 17 C 1.54246 * 108.89303 * 268.11922 * 16 14 13 18 18 C 1.50549 * 108.48102 * 159.17895 * 17 16 14 19 19 C 1.54074 * 112.41381 * 94.26828 * 18 17 16 20 20 C 1.54064 * 112.81581 * 318.27544 * 19 18 17 21 21 C 1.50472 * 112.49379 * 318.28785 * 20 19 18 22 22 C 1.45538 * 108.89500 * 145.32841 * 16 14 13 23 23 C 1.47429 * 108.70182 * 358.57943 * 13 12 11 24 24 H 0.96999 * 120.00722 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.72036 * 271.94354 * 11 9 7 26 26 H 1.09013 * 110.71755 * 35.21457 * 11 9 7 27 27 H 1.08994 * 109.99305 * 218.67415 * 12 11 9 28 28 H 1.08997 * 109.77673 * 97.49741 * 12 11 9 29 29 H 1.08995 * 108.87282 * 26.72341 * 16 14 13 30 30 H 1.08998 * 109.62912 * 278.97724 * 17 16 14 31 31 H 1.09000 * 109.62833 * 39.55506 * 17 16 14 32 32 H 1.08996 * 108.92630 * 333.50786 * 18 17 16 33 33 H 1.09008 * 108.91471 * 215.01684 * 18 17 16 34 34 H 1.09002 * 108.81236 * 197.41619 * 19 18 17 35 35 H 1.08993 * 108.81409 * 79.14255 * 19 18 17 36 36 H 1.09000 * 108.87590 * 197.50954 * 20 19 18 37 37 H 1.09002 * 108.87613 * 79.05864 * 20 19 18 38 38 H 1.08997 * 109.63526 * 334.44152 * 21 20 19 39 39 H 1.09001 * 109.62709 * 213.86282 * 21 20 19 40 40 H 1.08999 * 108.89346 * 303.44105 * 22 16 14 41 41 H 1.08998 * 108.89458 * 61.93411 * 22 16 14 42 42 H 1.09004 * 110.36184 * 143.19484 * 23 13 12 43 43 H 1.08999 * 110.36604 * 265.51577 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.5645 -2.5527 0.8431 11 6 0.4998 -2.7063 -1.3432 12 6 0.4018 -4.2426 -1.4532 13 7 1.4594 -4.8093 -0.6035 14 6 1.6930 -6.1226 -0.4109 15 8 0.9429 -6.9482 -0.8871 16 6 2.8827 -6.5652 0.4014 17 6 4.0787 -6.7903 -0.5463 18 6 5.3471 -6.7231 0.2618 19 6 5.8226 -8.1134 0.7254 20 6 4.6670 -9.0082 1.2127 21 6 3.6713 -8.2558 2.0532 22 6 2.5281 -7.7682 1.1397 23 6 2.2261 -3.7029 -0.0021 24 1 -0.4851 0.8400 0.0004 25 1 -0.4921 -2.2562 -1.3031 26 1 1.0757 -2.2997 -2.1747 27 1 0.5515 -4.5524 -2.4874 28 1 -0.5746 -4.5761 -1.1017 29 1 3.1377 -5.7780 1.1108 30 1 3.9937 -7.7698 -1.0168 31 1 4.0912 -6.0136 -1.3109 32 1 5.1751 -6.0987 1.1385 33 1 6.1292 -6.2672 -0.3454 34 1 6.5368 -7.9873 1.5392 35 1 6.3243 -8.6085 -0.1059 36 1 5.0795 -9.8267 1.8026 37 1 4.1537 -9.4244 0.3458 38 1 4.1583 -7.3992 2.5190 39 1 3.2693 -8.9150 2.8226 40 1 1.6507 -7.5607 1.7522 41 1 2.2821 -8.5582 0.4301 42 1 2.5187 -3.9545 1.0174 43 1 3.1056 -3.4788 -0.6058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397580970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:35 Heat of formation + Delta-G solvation = -66.434889 kcal Electronic energy + Delta-G solvation = -21013.172422 eV Core-core repulsion = 18056.732483 eV Total energy + Delta-G solvation = -2956.439940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18729 -38.08353 -36.57823 -33.02870 -32.54355 -32.15197 -30.21371 -28.48596 -25.42647 -24.89906 -24.64786 -22.40656 -20.72803 -19.74253 -19.34327 -18.56733 -16.92817 -16.38911 -15.93468 -15.12710 -15.05195 -14.57176 -14.55450 -13.91528 -13.58754 -13.11874 -13.02558 -12.64318 -12.54504 -12.33102 -12.15749 -12.12114 -11.61401 -11.21172 -11.14040 -10.98254 -10.75281 -10.73063 -10.63490 -10.62327 -10.40310 -10.38216 -10.24785 -9.81390 -9.55727 -9.13227 -9.00020 -8.50865 -7.97888 -6.14026 -4.18526 3.08572 3.24481 3.32049 3.33901 3.57745 4.34290 4.59094 4.65508 4.78133 5.03874 5.09208 5.14175 5.19318 5.23287 5.31149 5.39564 5.61069 5.71613 5.80778 5.83714 5.88760 5.97559 5.99461 6.01418 6.10008 6.13798 6.15381 6.19355 6.21572 6.30795 6.34085 6.39299 6.46088 6.50177 6.81687 7.00928 7.12216 7.44125 7.65085 7.85015 8.16635 8.22961 8.67180 8.83573 9.46911 10.96046 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.004750 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.367377 B = 5893.257307 C = 6551.595969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.046 3.954 10 H 0.042 0.958 11 C -0.113 4.113 12 C 0.103 3.897 13 N -0.610 5.610 14 C 0.522 3.478 15 O -0.562 6.562 16 C -0.097 4.097 17 C -0.101 4.101 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.107 4.107 23 C 0.100 3.900 24 H 0.262 0.738 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -12.671 1.912 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.019 4.019 13 N -0.342 5.342 14 C 0.311 3.689 15 O -0.442 6.442 16 C -0.118 4.118 17 C -0.139 4.139 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.022 4.022 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.303 -13.048 1.673 15.556 hybrid contribution 0.362 1.082 -0.055 1.142 sum 8.666 -11.966 1.617 14.863 Atomic orbital electron populations 1.69947 1.05980 1.26864 1.49621 1.24961 0.94838 0.99183 0.94660 0.86571 0.79857 0.83272 0.78180 1.20610 1.21200 1.19809 1.20929 0.92879 0.89810 1.51960 0.92199 1.19825 0.92688 0.90927 0.93834 0.93952 1.22671 1.02538 0.89287 1.00676 1.22116 0.90235 0.96441 0.93121 1.48784 1.33179 1.05159 1.47095 1.20407 0.86362 0.81033 0.81104 1.90625 1.49202 1.51949 1.52455 1.20249 0.94109 0.99737 0.97692 1.21227 0.92696 1.02589 0.97342 1.21347 0.97105 0.97040 1.00052 1.21913 0.97575 0.95507 1.00349 1.21364 0.96569 0.98047 0.99775 1.21306 0.96031 1.00215 0.97634 1.20354 0.98111 0.97510 0.98495 1.22711 0.96104 0.87090 0.96267 0.92798 0.90300 0.92242 0.93127 0.92716 0.89370 0.91059 0.91511 0.91663 0.91982 0.92405 0.92489 0.92584 0.91941 0.91494 0.91851 0.92153 0.90917 0.92240 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 12.62 55.43 0.70 -23.59 16 2 C 0.07 1.74 5.37 -17.82 -0.10 1.64 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.52 -13.18 8.49 -34.44 -0.29 -13.47 16 8 H 0.06 1.48 7.77 -52.49 -0.41 1.08 16 9 C 0.05 1.08 2.85 -89.63 -0.26 0.83 16 10 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.11 -2.50 5.90 -24.89 -0.15 -2.65 16 12 C 0.10 2.07 6.88 -3.05 -0.02 2.05 16 13 N -0.61 -11.86 3.33 -170.51 -0.57 -12.42 16 14 C 0.52 9.71 6.66 -10.98 -0.07 9.63 16 15 O -0.56 -12.07 16.49 5.55 0.09 -11.98 16 16 C -0.10 -1.38 1.73 -94.64 -0.16 -1.55 16 17 C -0.10 -1.27 4.97 -27.30 -0.14 -1.40 16 18 C -0.12 -1.23 5.32 -27.40 -0.15 -1.37 16 19 C -0.12 -1.05 5.85 -25.62 -0.15 -1.20 16 20 C -0.12 -1.13 5.31 -27.44 -0.15 -1.28 16 21 C -0.11 -1.17 5.61 -27.34 -0.15 -1.33 16 22 C -0.11 -1.40 4.12 -29.60 -0.12 -1.52 16 23 C 0.10 1.95 6.01 -2.53 -0.02 1.93 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.08 1.86 7.85 -51.93 -0.41 1.45 16 26 H 0.06 1.33 8.03 -51.92 -0.42 0.91 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.23 5.68 -51.93 -0.30 0.93 16 30 H 0.07 0.89 6.97 -51.93 -0.36 0.53 16 31 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 32 H 0.06 0.69 6.63 -51.93 -0.34 0.34 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.63 6.63 -51.93 -0.34 0.29 16 38 H 0.07 0.67 6.98 -51.93 -0.36 0.31 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 42 H 0.06 1.06 6.83 -51.93 -0.35 0.71 16 43 H 0.06 1.16 8.01 -51.93 -0.42 0.75 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -28.20 326.35 -9.23 -37.42 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.43 Total: 0.15 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.92 Total: -9.68 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.13 Total: -36.01 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.20 -9.23 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397580970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.013 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds