Wall clock time and date at job start Mon Mar 30 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99688 * 2 1 4 4 H 1.48497 * 109.46878 * 239.99259 * 3 2 1 5 5 H 1.48490 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46908 * 119.99811 * 3 2 1 7 7 C 1.37877 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00213 * 179.72819 * 7 2 1 9 9 C 1.50701 * 119.99889 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.64330 * 59.29142 * 9 7 2 11 11 C 1.54590 * 110.72126 * 296.14300 * 9 7 2 12 12 C 1.53997 * 105.13969 * 219.68287 * 11 9 7 13 13 N 1.47904 * 107.05659 * 358.77676 * 12 11 9 14 14 C 1.46904 * 110.99985 * 145.84113 * 13 12 11 15 15 H 1.09001 * 109.55498 * 303.56768 * 14 13 12 16 16 C 1.53154 * 109.55251 * 63.76828 * 14 13 12 17 17 C 1.53044 * 109.39979 * 178.47133 * 16 14 13 18 18 O 1.43042 * 109.44575 * 300.66699 * 17 16 14 19 19 C 1.42583 * 113.85827 * 58.73803 * 18 17 16 20 20 C 1.53401 * 113.61952 * 171.83649 * 19 18 17 21 21 C 1.53844 * 86.97631 * 220.08514 * 20 19 18 22 22 C 1.53415 * 113.58166 * 73.90789 * 19 18 17 23 23 C 1.52812 * 112.92404 * 302.91124 * 19 18 17 24 24 C 1.48731 * 105.94247 * 25.19996 * 13 12 11 25 25 H 0.96999 * 119.99951 * 0.02562 * 1 2 3 26 26 H 1.08995 * 110.31413 * 338.60028 * 11 9 7 27 27 H 1.09006 * 110.31261 * 100.77259 * 11 9 7 28 28 H 1.09000 * 109.91511 * 118.12527 * 12 11 9 29 29 H 1.08998 * 109.92078 * 239.22413 * 12 11 9 30 30 H 1.09001 * 109.48669 * 298.45211 * 16 14 13 31 31 H 1.09000 * 109.48309 * 58.49178 * 16 14 13 32 32 H 1.08998 * 109.47867 * 60.66457 * 17 16 14 33 33 H 1.09005 * 109.47512 * 180.67360 * 17 16 14 34 34 H 1.09001 * 113.62919 * 334.60870 * 20 19 18 35 35 H 1.09003 * 113.63143 * 105.56181 * 20 19 18 36 36 H 1.09006 * 113.60329 * 270.59478 * 21 20 19 37 37 H 1.09005 * 113.60320 * 139.73024 * 21 20 19 38 38 H 1.09010 * 113.62603 * 254.46995 * 22 19 18 39 39 H 1.08998 * 113.63204 * 25.42423 * 22 19 18 40 40 H 1.09004 * 109.56426 * 294.09091 * 23 19 18 41 41 H 1.08999 * 109.56189 * 173.75705 * 23 19 18 42 42 H 1.08995 * 110.83714 * 202.57496 * 24 13 12 43 43 H 1.08999 * 110.58364 * 79.38527 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 -0.0039 9 6 1.2511 -2.4992 0.0005 10 1 0.6082 -2.5717 -0.8767 11 6 0.4254 -2.6540 1.2982 12 6 0.5680 -4.1362 1.6912 13 7 1.4014 -4.7818 0.6537 14 6 2.2452 -5.8340 1.2359 15 1 2.8564 -5.4119 2.0336 16 6 1.3588 -6.9466 1.8034 17 6 2.2417 -8.0585 2.3746 18 8 3.0808 -8.5793 1.3398 19 6 3.9271 -7.6027 0.7374 20 6 4.9608 -8.1967 -0.2280 21 6 5.9633 -7.1835 0.3509 22 6 5.1030 -7.1773 1.6262 23 6 3.1518 -6.4244 0.1496 24 6 2.2308 -3.6978 0.0630 25 1 -0.4850 0.8400 -0.0004 26 1 0.8296 -2.0142 2.0826 27 1 -0.6208 -2.4110 1.1123 28 1 1.0555 -4.2175 2.6627 29 1 -0.4145 -4.6067 1.7284 30 1 0.7277 -6.5410 2.5942 31 1 0.7315 -7.3521 1.0095 32 1 2.8607 -7.6554 3.1761 33 1 1.6121 -8.8565 2.7681 34 1 5.2144 -9.2346 -0.0121 35 1 4.7254 -8.0270 -1.2787 36 1 5.9715 -6.2286 -0.1747 37 1 6.9619 -7.5941 0.5001 38 1 4.9818 -6.1876 2.0668 39 1 5.3959 -7.9333 2.3547 40 1 2.5429 -6.7687 -0.6865 41 1 3.8513 -5.6630 -0.1955 42 1 2.5699 -3.9700 -0.9364 43 1 3.0784 -3.4686 0.7089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397667877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:40 Heat of formation + Delta-G solvation = -30.669659 kcal Electronic energy + Delta-G solvation = -21280.874717 eV Core-core repulsion = 18325.985674 eV Total energy + Delta-G solvation = -2954.889043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59904 -38.04965 -36.28403 -33.93256 -32.11114 -29.81742 -28.82124 -27.79878 -25.87070 -24.84408 -23.70734 -23.10049 -21.05401 -19.75265 -19.27869 -18.51051 -16.63400 -16.47270 -15.86979 -15.55654 -14.83403 -14.58979 -14.40125 -14.21462 -13.62103 -13.33427 -13.04964 -12.70291 -12.46330 -12.19588 -11.86211 -11.76178 -11.43334 -11.27546 -11.06492 -11.01964 -10.88724 -10.74911 -10.74189 -10.55871 -10.39850 -10.09801 -9.83560 -9.66809 -9.36061 -9.19066 -8.78604 -8.39942 -7.75104 -6.02689 -4.06238 3.30416 3.35530 3.37582 3.75917 4.32889 4.43112 4.50472 4.59446 4.71839 4.79981 5.02849 5.17169 5.18586 5.30826 5.41025 5.47390 5.60088 5.62200 5.65313 5.72702 5.80917 5.81170 5.88894 5.92704 5.96610 6.07118 6.19009 6.24298 6.26634 6.29536 6.39445 6.51476 6.54680 6.84230 7.12453 7.16490 7.30652 7.57244 7.65678 7.73981 7.87442 8.03160 8.43691 8.96192 9.57981 11.07171 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.004854 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.716813 B = 5767.080868 C = 6450.948431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.037 0.963 11 C -0.103 4.103 12 C 0.036 3.964 13 N -0.517 5.517 14 C 0.079 3.921 15 H 0.036 0.964 16 C -0.147 4.147 17 C 0.064 3.936 18 O -0.370 6.370 19 C 0.095 3.905 20 C -0.121 4.121 21 C -0.139 4.139 22 C -0.164 4.164 23 C -0.115 4.115 24 C 0.043 3.957 25 H 0.261 0.739 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 -15.012 3.619 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.055 0.945 11 C -0.142 4.142 12 C -0.091 4.091 13 N -0.241 5.241 14 C -0.030 4.030 15 H 0.054 0.946 16 C -0.185 4.185 17 C -0.013 4.013 18 O -0.289 6.289 19 C 0.055 3.945 20 C -0.158 4.158 21 C -0.176 4.176 22 C -0.202 4.202 23 C -0.153 4.153 24 C -0.084 4.084 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.464 -15.330 3.173 16.937 hybrid contribution 0.863 1.644 0.884 2.056 sum 7.327 -13.686 4.057 16.045 Atomic orbital electron populations 1.69964 1.05877 1.26615 1.50078 1.24960 0.94821 0.98972 0.95011 0.86699 0.79637 0.83304 0.78588 1.20244 1.21286 1.20363 1.21050 0.92695 0.90438 1.51403 0.92764 1.19521 0.92254 0.90834 0.93998 0.94488 1.22339 1.01414 0.90510 0.99952 1.22926 0.96653 0.97242 0.92305 1.64789 1.20387 1.10480 1.28437 1.21735 0.93343 0.92935 0.94991 0.94582 1.22212 0.98747 0.95978 1.01538 1.22521 0.92329 0.96758 0.89665 1.87896 1.54487 1.34295 1.52192 1.22723 0.88115 0.89595 0.94090 1.22994 0.94394 0.99654 0.98795 1.22717 0.97808 0.99885 0.97222 1.23529 0.97108 1.02137 0.97432 1.21879 0.98405 0.96150 0.98838 1.23374 0.95884 0.91568 0.97534 0.92968 0.92848 0.92157 0.95604 0.92093 0.91052 0.90325 0.93550 0.89109 0.89381 0.90648 0.89671 0.91000 0.91185 0.89678 0.90076 0.90460 0.91894 0.94972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 12.61 55.43 0.70 -24.76 16 2 C 0.06 1.78 5.35 -17.82 -0.10 1.68 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.11 8.40 -34.44 -0.29 -14.40 16 8 H 0.05 1.46 7.78 -52.49 -0.41 1.05 16 9 C 0.05 1.33 2.93 -89.92 -0.26 1.07 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.10 -2.43 5.65 -25.38 -0.14 -2.57 16 12 C 0.04 0.71 5.54 -2.75 -0.02 0.69 16 13 N -0.52 -9.77 5.10 -222.04 -1.13 -10.90 16 14 C 0.08 1.25 1.63 -67.47 -0.11 1.13 16 15 H 0.04 0.60 7.47 -51.93 -0.39 0.21 16 16 C -0.15 -2.01 5.30 -26.63 -0.14 -2.16 16 17 C 0.06 0.78 6.74 37.18 0.25 1.03 16 18 O -0.37 -5.03 10.53 -35.23 -0.37 -5.40 16 19 C 0.09 1.20 1.16 -90.29 -0.10 1.10 16 20 C -0.12 -1.31 7.50 -26.08 -0.20 -1.50 16 21 C -0.14 -1.41 7.73 -25.86 -0.20 -1.61 16 22 C -0.16 -1.88 6.91 -26.08 -0.18 -2.06 16 23 C -0.11 -1.65 4.16 -26.67 -0.11 -1.76 16 24 C 0.04 0.91 4.84 -1.79 -0.01 0.90 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.05 1.32 7.84 -51.93 -0.41 0.92 16 27 H 0.06 1.49 8.11 -51.93 -0.42 1.07 16 28 H 0.03 0.47 7.65 -51.93 -0.40 0.08 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.95 7.35 -51.93 -0.38 0.57 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.53 7.84 -51.93 -0.41 0.13 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.08 0.88 7.61 -51.93 -0.40 0.49 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.85 7.57 -51.92 -0.39 0.46 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.12 6.41 -51.93 -0.33 0.79 16 42 H 0.06 1.28 7.80 -51.93 -0.41 0.87 16 43 H 0.03 0.68 7.91 -51.93 -0.41 0.27 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -28.34 325.81 -10.21 -38.54 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.68 Total: -0.07 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.61 Total: -18.46 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.43 Total: -35.66 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.37 Total: -5.40 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.34 -10.21 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397667877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.875 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds