Wall clock time and date at job start Mon Mar 30 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99688 * 2 1 4 4 H 1.48497 * 109.46878 * 239.99259 * 3 2 1 5 5 H 1.48490 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46908 * 119.99811 * 3 2 1 7 7 C 1.37877 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00213 * 179.72819 * 7 2 1 9 9 C 1.50701 * 119.99889 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.64330 * 59.29142 * 9 7 2 11 11 C 1.54590 * 110.72126 * 296.14300 * 9 7 2 12 12 C 1.53997 * 105.13969 * 219.68287 * 11 9 7 13 13 N 1.47904 * 107.05659 * 358.77676 * 12 11 9 14 14 C 1.46904 * 110.99985 * 145.84113 * 13 12 11 15 15 H 1.09001 * 109.55498 * 303.56768 * 14 13 12 16 16 C 1.53154 * 109.55251 * 63.76828 * 14 13 12 17 17 C 1.53044 * 109.39979 * 178.47133 * 16 14 13 18 18 O 1.43042 * 109.44575 * 300.66699 * 17 16 14 19 19 C 1.42583 * 113.85827 * 58.73803 * 18 17 16 20 20 C 1.53401 * 113.61952 * 171.83649 * 19 18 17 21 21 C 1.53844 * 86.97631 * 220.08514 * 20 19 18 22 22 C 1.53415 * 113.58166 * 73.90789 * 19 18 17 23 23 C 1.52812 * 112.92404 * 302.91124 * 19 18 17 24 24 C 1.48731 * 105.94247 * 25.19996 * 13 12 11 25 25 H 0.96999 * 119.99951 * 0.02562 * 1 2 3 26 26 H 1.08995 * 110.31413 * 338.60028 * 11 9 7 27 27 H 1.09006 * 110.31261 * 100.77259 * 11 9 7 28 28 H 1.09000 * 109.91511 * 118.12527 * 12 11 9 29 29 H 1.08998 * 109.92078 * 239.22413 * 12 11 9 30 30 H 1.09001 * 109.48669 * 298.45211 * 16 14 13 31 31 H 1.09000 * 109.48309 * 58.49178 * 16 14 13 32 32 H 1.08998 * 109.47867 * 60.66457 * 17 16 14 33 33 H 1.09005 * 109.47512 * 180.67360 * 17 16 14 34 34 H 1.09001 * 113.62919 * 334.60870 * 20 19 18 35 35 H 1.09003 * 113.63143 * 105.56181 * 20 19 18 36 36 H 1.09006 * 113.60329 * 270.59478 * 21 20 19 37 37 H 1.09005 * 113.60320 * 139.73024 * 21 20 19 38 38 H 1.09010 * 113.62603 * 254.46995 * 22 19 18 39 39 H 1.08998 * 113.63204 * 25.42423 * 22 19 18 40 40 H 1.09004 * 109.56426 * 294.09091 * 23 19 18 41 41 H 1.08999 * 109.56189 * 173.75705 * 23 19 18 42 42 H 1.08995 * 110.83714 * 202.57496 * 24 13 12 43 43 H 1.08999 * 110.58364 * 79.38527 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 -0.0039 9 6 1.2511 -2.4992 0.0005 10 1 0.6082 -2.5717 -0.8767 11 6 0.4254 -2.6540 1.2982 12 6 0.5680 -4.1362 1.6912 13 7 1.4014 -4.7818 0.6537 14 6 2.2452 -5.8340 1.2359 15 1 2.8564 -5.4119 2.0336 16 6 1.3588 -6.9466 1.8034 17 6 2.2417 -8.0585 2.3746 18 8 3.0808 -8.5793 1.3398 19 6 3.9271 -7.6027 0.7374 20 6 4.9608 -8.1967 -0.2280 21 6 5.9633 -7.1835 0.3509 22 6 5.1030 -7.1773 1.6262 23 6 3.1518 -6.4244 0.1496 24 6 2.2308 -3.6978 0.0630 25 1 -0.4850 0.8400 -0.0004 26 1 0.8296 -2.0142 2.0826 27 1 -0.6208 -2.4110 1.1123 28 1 1.0555 -4.2175 2.6627 29 1 -0.4145 -4.6067 1.7284 30 1 0.7277 -6.5410 2.5942 31 1 0.7315 -7.3521 1.0095 32 1 2.8607 -7.6554 3.1761 33 1 1.6121 -8.8565 2.7681 34 1 5.2144 -9.2346 -0.0121 35 1 4.7254 -8.0270 -1.2787 36 1 5.9715 -6.2286 -0.1747 37 1 6.9619 -7.5941 0.5001 38 1 4.9818 -6.1876 2.0668 39 1 5.3959 -7.9333 2.3547 40 1 2.5429 -6.7687 -0.6865 41 1 3.8513 -5.6630 -0.1955 42 1 2.5699 -3.9700 -0.9364 43 1 3.0784 -3.4686 0.7089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397667877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:40 Heat of formation + Delta-G solvation = -47.360218 kcal Electronic energy + Delta-G solvation = -21281.598474 eV Core-core repulsion = 18325.985674 eV Total energy + Delta-G solvation = -2955.612800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64356 -39.58232 -37.28347 -35.58591 -33.88207 -31.01395 -30.56066 -29.32742 -26.77658 -26.64395 -24.70762 -24.45939 -22.39372 -21.34830 -20.98842 -19.50415 -18.41317 -17.58010 -17.21296 -16.77463 -16.51126 -16.02695 -15.78128 -15.50527 -14.91894 -14.61079 -14.39220 -14.12187 -13.76509 -13.58609 -13.23234 -13.15860 -13.00927 -12.74475 -12.51846 -12.50176 -12.31899 -12.15698 -12.09527 -11.84612 -11.65182 -11.61954 -11.30033 -11.08235 -10.92709 -10.82309 -10.51438 -10.35245 -9.29850 -8.14834 -6.25686 1.40902 1.42127 1.49906 2.41297 2.81958 3.02638 3.17008 3.52284 3.59980 3.79048 3.83712 3.93816 4.05543 4.09352 4.18199 4.28523 4.34856 4.47425 4.49707 4.55430 4.61643 4.71431 4.78601 4.81158 4.82901 4.88611 4.95388 4.98206 5.02779 5.05089 5.14253 5.21482 5.23707 5.27739 5.38376 5.43951 5.58358 5.77450 5.83933 5.99959 6.27233 6.34202 6.38158 6.84199 7.42372 8.94645 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.004854 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.716813 B = 5767.080868 C = 6450.948431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.001 0.999 11 C -0.095 4.095 12 C 0.048 3.952 13 N -0.521 5.521 14 C 0.078 3.922 15 H 0.033 0.967 16 C -0.142 4.142 17 C 0.066 3.934 18 O -0.380 6.380 19 C 0.087 3.913 20 C -0.118 4.118 21 C -0.133 4.133 22 C -0.162 4.162 23 C -0.110 4.110 24 C 0.060 3.940 25 H 0.261 0.739 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -16.188 4.404 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.024 3.976 10 H 0.019 0.981 11 C -0.134 4.134 12 C -0.080 4.080 13 N -0.245 5.245 14 C -0.031 4.031 15 H 0.051 0.949 16 C -0.180 4.180 17 C -0.011 4.011 18 O -0.300 6.300 19 C 0.047 3.953 20 C -0.155 4.155 21 C -0.170 4.170 22 C -0.199 4.199 23 C -0.148 4.148 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.946 -16.523 3.960 18.757 hybrid contribution 0.370 1.994 0.622 2.121 sum 8.316 -14.529 4.581 17.356 Atomic orbital electron populations 1.70096 1.07338 1.27401 1.50889 1.25761 0.95634 1.02465 0.94603 0.85658 0.78409 0.78965 0.78923 1.19491 1.20980 1.19568 1.21400 0.92939 0.91711 1.51310 0.92709 1.19480 0.92859 0.92082 0.93218 0.98085 1.22122 0.99430 0.93231 0.98608 1.22795 0.97891 0.94340 0.92988 1.64793 1.20699 1.10205 1.28821 1.21844 0.93516 0.92450 0.95300 0.94874 1.22183 0.98649 0.95756 1.01395 1.22624 0.92284 0.96845 0.89365 1.87894 1.54778 1.34701 1.52593 1.22806 0.88241 0.89103 0.95137 1.23020 0.93662 1.00282 0.98532 1.22705 0.98536 0.99615 0.96183 1.23524 0.96699 1.01786 0.97912 1.21812 0.98074 0.96814 0.98112 1.23083 0.94884 0.90698 0.98067 0.92999 0.94746 0.94420 0.94033 0.90560 0.90426 0.91185 0.92749 0.86869 0.88397 0.90502 0.90124 0.89145 0.92205 0.88677 0.91191 0.90931 0.91452 0.95152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 12.61 21.45 0.27 -53.69 16 2 C 0.01 0.82 5.35 84.65 0.45 1.27 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -29.73 8.40 25.60 0.22 -29.52 16 8 H 0.05 2.96 7.78 -2.91 -0.02 2.94 16 9 C 0.04 2.21 2.93 -10.34 -0.03 2.17 16 10 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 11 C -0.10 -4.58 5.65 31.47 0.18 -4.40 16 12 C 0.05 1.82 5.54 86.45 0.48 2.30 16 13 N -0.52 -19.43 5.10 -856.40 -4.37 -23.80 16 14 C 0.08 2.34 1.63 45.07 0.07 2.41 16 15 H 0.03 1.04 7.47 -2.39 -0.02 1.03 16 16 C -0.14 -3.62 5.30 30.66 0.16 -3.45 16 17 C 0.07 1.41 6.74 72.00 0.49 1.89 16 18 O -0.38 -9.46 10.53 -148.98 -1.57 -11.02 16 19 C 0.09 2.04 1.16 -10.58 -0.01 2.03 16 20 C -0.12 -2.28 7.50 31.01 0.23 -2.05 16 21 C -0.13 -2.40 7.73 31.16 0.24 -2.16 16 22 C -0.16 -3.34 6.91 31.02 0.21 -3.12 16 23 C -0.11 -3.05 4.16 30.64 0.13 -2.92 16 24 C 0.06 2.54 4.84 86.61 0.42 2.96 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.03 1.74 7.84 -2.39 -0.02 1.72 16 27 H 0.04 1.93 8.11 -2.38 -0.02 1.91 16 28 H 0.04 1.46 7.65 -2.39 -0.02 1.44 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 30 H 0.08 1.88 7.35 -2.39 -0.02 1.86 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.10 7.84 -2.39 -0.02 1.08 16 33 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 36 H 0.08 1.53 7.61 -2.38 -0.02 1.51 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 1.35 7.57 -2.38 -0.02 1.34 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.07 2.05 6.41 -2.39 -0.02 2.03 16 42 H 0.07 2.76 7.80 -2.39 -0.02 2.74 16 43 H 0.03 1.29 7.91 -2.39 -0.02 1.27 16 Total: -1.00 -61.08 325.81 0.55 -60.53 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.95 Total: 14.94 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 3.24 Total: -32.59 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -4.10 Total: -77.49 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.57 Total: -11.02 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -61.08 0.55 -60.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397667877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.168 kcal (2) G-P(sol) polarization free energy of solvation -61.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds