Wall clock time and date at job start Mon Mar 30 2020 06:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47324 * 264.90790 * 3 2 1 5 5 H 1.48502 * 109.47173 * 24.91048 * 3 2 1 6 6 H 1.48501 * 109.46921 * 144.90766 * 3 2 1 7 7 C 1.37875 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00384 * 4.49724 * 7 2 1 9 9 C 1.50703 * 119.99840 * 184.49926 * 7 2 1 10 10 H 1.09002 * 110.76448 * 337.95838 * 9 7 2 11 11 C 1.55390 * 110.84893 * 101.22415 * 9 7 2 12 12 C 1.54904 * 101.74579 * 153.86232 * 11 9 7 13 13 N 1.47852 * 104.79348 * 323.01842 * 12 11 9 14 14 C 1.46898 * 110.99672 * 146.35968 * 13 12 11 15 15 H 1.08998 * 109.55839 * 295.38271 * 14 13 12 16 16 C 1.53161 * 109.55541 * 55.69564 * 14 13 12 17 17 C 1.53045 * 109.40479 * 178.47799 * 16 14 13 18 18 O 1.43046 * 109.43958 * 300.66536 * 17 16 14 19 19 C 1.42582 * 113.85734 * 58.73185 * 18 17 16 20 20 C 1.53421 * 113.57212 * 73.88094 * 19 18 17 21 21 C 1.53835 * 86.97544 * 89.48240 * 20 19 18 22 22 C 1.53385 * 113.62146 * 171.80204 * 19 18 17 23 23 C 1.52810 * 112.93653 * 302.90540 * 19 18 17 24 24 C 1.47446 * 108.56299 * 24.09640 * 13 12 11 25 25 H 0.97002 * 120.00006 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.87260 * 35.77324 * 11 9 7 27 27 H 1.09000 * 111.05900 * 272.03278 * 11 9 7 28 28 H 1.08996 * 110.37706 * 204.19752 * 12 11 9 29 29 H 1.08996 * 110.47191 * 81.89171 * 12 11 9 30 30 H 1.08998 * 109.47638 * 298.45386 * 16 14 13 31 31 H 1.09001 * 109.48103 * 58.49501 * 16 14 13 32 32 H 1.09003 * 109.47572 * 180.68080 * 17 16 14 33 33 H 1.08995 * 109.48278 * 60.65794 * 17 16 14 34 34 H 1.08997 * 113.63380 * 204.00783 * 20 19 18 35 35 H 1.09011 * 113.63178 * 334.96091 * 20 19 18 36 36 H 1.08998 * 113.61358 * 270.59918 * 21 20 19 37 37 H 1.09002 * 113.68065 * 139.73465 * 21 20 19 38 38 H 1.08998 * 113.63277 * 25.08397 * 22 19 18 39 39 H 1.08995 * 113.63170 * 155.95000 * 22 19 18 40 40 H 1.09001 * 109.56387 * 294.10377 * 23 19 18 41 41 H 1.08994 * 109.56554 * 173.75681 * 23 19 18 42 42 H 1.08997 * 109.88677 * 118.41897 * 24 13 12 43 43 H 1.09000 * 109.88728 * 239.43557 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6042 1.9844 -1.3946 5 1 1.3968 2.6813 0.5897 6 1 3.4887 1.4736 0.8049 7 6 2.0045 -1.1940 -0.0005 8 1 1.4671 -2.1279 -0.0743 9 6 3.5081 -1.1961 0.1018 10 1 3.9183 -0.2374 -0.2157 11 6 3.9634 -1.5357 1.5482 12 6 5.3672 -2.1429 1.3024 13 7 5.2317 -2.9107 0.0461 14 6 6.4782 -2.8739 -0.7303 15 1 6.6805 -1.8508 -1.0474 16 6 7.6356 -3.3833 0.1338 17 6 8.9254 -3.3793 -0.6901 18 8 8.7611 -4.2201 -1.8356 19 6 7.6861 -3.8307 -2.6875 20 6 7.9842 -2.5745 -3.5163 21 6 8.5536 -3.5173 -4.5902 22 6 7.6368 -4.6075 -4.0091 23 6 6.3419 -3.7757 -1.9628 24 6 4.1099 -2.3491 -0.7286 25 1 -0.4850 0.8401 -0.0004 26 1 3.2959 -2.2672 2.0038 27 1 4.0289 -0.6358 2.1597 28 1 5.6435 -2.8045 2.1233 29 1 6.1092 -1.3530 1.1862 30 1 7.7558 -2.7332 1.0004 31 1 7.4206 -4.3984 0.4677 32 1 9.7476 -3.7531 -0.0798 33 1 9.1464 -2.3625 -1.0143 34 1 7.0900 -2.0387 -3.8347 35 1 8.7326 -1.9217 -3.0666 36 1 9.6157 -3.7288 -4.4668 37 1 8.2956 -3.2272 -5.6088 38 1 8.1057 -5.5901 -3.9562 39 1 6.6463 -4.6350 -4.4631 40 1 6.0543 -4.7796 -1.6504 41 1 5.5834 -3.3682 -2.6310 42 1 4.4725 -1.9685 -1.6834 43 1 3.3552 -3.1171 -0.8983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397667881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:49 Heat of formation + Delta-G solvation = -26.485367 kcal Electronic energy + Delta-G solvation = -21306.632922 eV Core-core repulsion = 18351.925324 eV Total energy + Delta-G solvation = -2954.707598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64807 -38.31650 -36.14812 -33.94604 -32.24608 -30.06958 -29.38854 -28.10658 -25.90054 -24.98930 -23.45998 -23.06729 -21.02088 -19.80809 -19.25503 -19.04930 -17.18289 -16.42340 -16.14639 -15.45017 -14.87953 -14.62943 -14.39899 -14.17924 -13.94120 -13.40213 -13.04605 -12.83310 -12.49930 -12.40061 -12.30514 -11.92693 -11.66096 -11.40927 -11.09405 -10.95928 -10.91972 -10.85991 -10.78359 -10.62695 -10.26613 -10.17023 -9.89016 -9.72254 -9.66196 -9.31697 -9.10613 -8.55240 -7.73886 -6.11373 -4.09304 3.23618 3.32419 3.33347 3.58186 4.29483 4.37574 4.46107 4.54463 4.71379 4.85288 4.91875 5.09386 5.11193 5.18265 5.34921 5.42282 5.50876 5.58031 5.62958 5.65434 5.71770 5.78378 5.79807 5.87001 5.88139 5.97211 6.03886 6.07641 6.18781 6.20125 6.23999 6.29659 6.43737 6.61364 6.80143 6.86502 7.15608 7.22363 7.25206 7.60020 7.69099 7.74914 8.50912 8.94546 9.51772 11.01883 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026312 B = 0.005118 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.884387 B = 5469.505578 C = 5872.653431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.000 4.000 10 H 0.033 0.967 11 C -0.127 4.127 12 C 0.041 3.959 13 N -0.527 5.527 14 C 0.082 3.918 15 H 0.036 0.964 16 C -0.149 4.149 17 C 0.064 3.936 18 O -0.358 6.358 19 C 0.096 3.904 20 C -0.166 4.166 21 C -0.135 4.135 22 C -0.124 4.124 23 C -0.124 4.124 24 C 0.052 3.948 25 H 0.264 0.736 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.012 -5.723 -4.497 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.541 4.541 8 H 0.094 0.906 9 C -0.020 4.020 10 H 0.051 0.949 11 C -0.166 4.166 12 C -0.086 4.086 13 N -0.251 5.251 14 C -0.027 4.027 15 H 0.054 0.946 16 C -0.187 4.187 17 C -0.013 4.013 18 O -0.277 6.277 19 C 0.055 3.945 20 C -0.203 4.203 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.075 4.075 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.851 -6.285 -4.425 19.435 hybrid contribution 0.384 2.137 -0.027 2.171 sum 18.235 -4.149 -4.451 19.223 Atomic orbital electron populations 1.69903 1.06260 1.26965 1.50566 1.25081 0.94701 0.98928 0.94419 0.86849 0.80085 0.83854 0.78607 1.20313 1.21506 1.19318 1.20941 0.88507 0.94584 1.50095 0.90595 1.20362 0.97172 0.93571 0.90920 0.94916 1.23015 0.93709 0.99460 1.00374 1.23013 0.98314 0.94987 0.92297 1.63703 1.03292 1.53198 1.04952 1.21743 0.90613 0.97005 0.93324 0.94580 1.22260 0.94490 1.03198 0.98742 1.22562 0.97383 0.94623 0.86747 1.87859 1.50621 1.53677 1.35569 1.22240 0.87139 0.95534 0.89561 1.23506 1.01740 0.97134 0.97962 1.22782 0.99608 0.96609 0.98218 1.22940 1.00775 0.98726 0.93688 1.22090 0.95946 1.01510 0.96639 1.22979 0.91725 0.97741 0.95048 0.92627 0.91032 0.92789 0.91643 0.94995 0.90976 0.90246 0.88856 0.93414 0.89257 0.91318 0.90059 0.91457 0.90612 0.88715 0.90247 0.90514 0.94501 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.42 27.03 -169.99 -4.59 16.83 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.30 6.77 56.52 0.38 -5.91 16 7 C -0.50 -13.90 8.85 -34.44 -0.30 -14.20 16 8 H 0.08 2.29 7.95 -52.49 -0.42 1.87 16 9 C 0.00 -0.01 2.60 -89.81 -0.23 -0.24 16 10 H 0.03 0.78 5.26 -51.93 -0.27 0.50 16 11 C -0.13 -2.64 6.53 -24.46 -0.16 -2.80 16 12 C 0.04 0.73 5.39 -2.30 -0.01 0.71 16 13 N -0.53 -9.38 5.03 -222.99 -1.12 -10.50 16 14 C 0.08 1.23 1.50 -67.46 -0.10 1.13 16 15 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 16 C -0.15 -1.91 5.15 -26.62 -0.14 -2.05 16 17 C 0.06 0.72 6.73 37.18 0.25 0.97 16 18 O -0.36 -4.65 10.45 -35.23 -0.37 -5.02 16 19 C 0.10 1.17 1.03 -90.30 -0.09 1.08 16 20 C -0.17 -1.86 7.12 -26.08 -0.19 -2.05 16 21 C -0.13 -1.33 8.02 -25.86 -0.21 -1.54 16 22 C -0.12 -1.31 7.47 -26.09 -0.19 -1.50 16 23 C -0.12 -1.72 4.39 -26.66 -0.12 -1.84 16 24 C 0.05 1.06 5.82 -2.84 -0.02 1.04 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.53 7.40 -51.93 -0.38 0.15 16 30 H 0.07 0.88 6.89 -51.93 -0.36 0.52 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.52 7.21 -51.93 -0.37 0.15 16 34 H 0.09 1.01 8.02 -51.93 -0.42 0.59 16 35 H 0.07 0.77 7.26 -51.92 -0.38 0.39 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.09 6.82 -51.93 -0.35 0.73 16 42 H 0.04 0.71 6.61 -51.93 -0.34 0.37 16 43 H 0.08 1.65 7.74 -51.93 -0.40 1.24 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -29.36 322.31 -9.56 -38.92 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.49 Total: 0.72 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.61 Total: -19.37 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.35 Total: -36.94 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.37 Total: -5.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.36 -9.56 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397667881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.436 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds