Wall clock time and date at job start Mon Mar 30 2020 06:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47324 * 264.90790 * 3 2 1 5 5 H 1.48502 * 109.47173 * 24.91048 * 3 2 1 6 6 H 1.48501 * 109.46921 * 144.90766 * 3 2 1 7 7 C 1.37875 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00384 * 4.49724 * 7 2 1 9 9 C 1.50703 * 119.99840 * 184.49926 * 7 2 1 10 10 H 1.09002 * 110.76448 * 337.95838 * 9 7 2 11 11 C 1.55390 * 110.84893 * 101.22415 * 9 7 2 12 12 C 1.54904 * 101.74579 * 153.86232 * 11 9 7 13 13 N 1.47852 * 104.79348 * 323.01842 * 12 11 9 14 14 C 1.46898 * 110.99672 * 146.35968 * 13 12 11 15 15 H 1.08998 * 109.55839 * 295.38271 * 14 13 12 16 16 C 1.53161 * 109.55541 * 55.69564 * 14 13 12 17 17 C 1.53045 * 109.40479 * 178.47799 * 16 14 13 18 18 O 1.43046 * 109.43958 * 300.66536 * 17 16 14 19 19 C 1.42582 * 113.85734 * 58.73185 * 18 17 16 20 20 C 1.53421 * 113.57212 * 73.88094 * 19 18 17 21 21 C 1.53835 * 86.97544 * 89.48240 * 20 19 18 22 22 C 1.53385 * 113.62146 * 171.80204 * 19 18 17 23 23 C 1.52810 * 112.93653 * 302.90540 * 19 18 17 24 24 C 1.47446 * 108.56299 * 24.09640 * 13 12 11 25 25 H 0.97002 * 120.00006 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.87260 * 35.77324 * 11 9 7 27 27 H 1.09000 * 111.05900 * 272.03278 * 11 9 7 28 28 H 1.08996 * 110.37706 * 204.19752 * 12 11 9 29 29 H 1.08996 * 110.47191 * 81.89171 * 12 11 9 30 30 H 1.08998 * 109.47638 * 298.45386 * 16 14 13 31 31 H 1.09001 * 109.48103 * 58.49501 * 16 14 13 32 32 H 1.09003 * 109.47572 * 180.68080 * 17 16 14 33 33 H 1.08995 * 109.48278 * 60.65794 * 17 16 14 34 34 H 1.08997 * 113.63380 * 204.00783 * 20 19 18 35 35 H 1.09011 * 113.63178 * 334.96091 * 20 19 18 36 36 H 1.08998 * 113.61358 * 270.59918 * 21 20 19 37 37 H 1.09002 * 113.68065 * 139.73465 * 21 20 19 38 38 H 1.08998 * 113.63277 * 25.08397 * 22 19 18 39 39 H 1.08995 * 113.63170 * 155.95000 * 22 19 18 40 40 H 1.09001 * 109.56387 * 294.10377 * 23 19 18 41 41 H 1.08994 * 109.56554 * 173.75681 * 23 19 18 42 42 H 1.08997 * 109.88677 * 118.41897 * 24 13 12 43 43 H 1.09000 * 109.88728 * 239.43557 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6042 1.9844 -1.3946 5 1 1.3968 2.6813 0.5897 6 1 3.4887 1.4736 0.8049 7 6 2.0045 -1.1940 -0.0005 8 1 1.4671 -2.1279 -0.0743 9 6 3.5081 -1.1961 0.1018 10 1 3.9183 -0.2374 -0.2157 11 6 3.9634 -1.5357 1.5482 12 6 5.3672 -2.1429 1.3024 13 7 5.2317 -2.9107 0.0461 14 6 6.4782 -2.8739 -0.7303 15 1 6.6805 -1.8508 -1.0474 16 6 7.6356 -3.3833 0.1338 17 6 8.9254 -3.3793 -0.6901 18 8 8.7611 -4.2201 -1.8356 19 6 7.6861 -3.8307 -2.6875 20 6 7.9842 -2.5745 -3.5163 21 6 8.5536 -3.5173 -4.5902 22 6 7.6368 -4.6075 -4.0091 23 6 6.3419 -3.7757 -1.9628 24 6 4.1099 -2.3491 -0.7286 25 1 -0.4850 0.8401 -0.0004 26 1 3.2959 -2.2672 2.0038 27 1 4.0289 -0.6358 2.1597 28 1 5.6435 -2.8045 2.1233 29 1 6.1092 -1.3530 1.1862 30 1 7.7558 -2.7332 1.0004 31 1 7.4206 -4.3984 0.4677 32 1 9.7476 -3.7531 -0.0798 33 1 9.1464 -2.3625 -1.0143 34 1 7.0900 -2.0387 -3.8347 35 1 8.7326 -1.9217 -3.0666 36 1 9.6157 -3.7288 -4.4668 37 1 8.2956 -3.2272 -5.6088 38 1 8.1057 -5.5901 -3.9562 39 1 6.6463 -4.6350 -4.4631 40 1 6.0543 -4.7796 -1.6504 41 1 5.5834 -3.3682 -2.6310 42 1 4.4725 -1.9685 -1.6834 43 1 3.3552 -3.1171 -0.8983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397667881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:48 Heat of formation + Delta-G solvation = -44.978202 kcal Electronic energy + Delta-G solvation = -21307.434831 eV Core-core repulsion = 18351.925324 eV Total energy + Delta-G solvation = -2955.509508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64556 -39.73523 -37.10366 -35.49556 -34.10638 -31.16196 -31.01949 -29.53536 -26.83078 -26.60560 -24.67998 -24.19205 -22.28423 -21.26997 -20.80592 -20.01731 -19.26996 -17.56648 -17.06108 -16.73586 -16.25069 -16.12190 -15.53193 -15.40612 -15.03978 -14.88092 -14.49287 -14.19862 -14.06101 -13.87891 -13.41470 -13.20571 -12.98888 -12.73921 -12.57877 -12.34246 -12.28383 -12.03236 -11.91097 -11.74087 -11.72155 -11.68549 -11.47698 -11.30409 -11.10828 -10.85061 -10.69358 -10.28676 -9.18254 -8.30993 -6.33708 1.31609 1.32540 1.43588 2.31965 2.69773 2.99811 3.03118 3.52258 3.62766 3.82518 3.89377 3.95327 4.03434 4.09296 4.15295 4.26159 4.33235 4.35935 4.45609 4.47868 4.60109 4.71477 4.75346 4.77511 4.80830 4.84405 4.88763 4.97275 5.01633 5.04730 5.09100 5.15871 5.18932 5.25748 5.39217 5.40465 5.42797 5.45121 5.67996 6.08760 6.26596 6.33483 6.35097 6.71738 7.30411 8.86102 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026312 B = 0.005118 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.884387 B = 5469.505578 C = 5872.653431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.508 4.508 8 H 0.031 0.969 9 C -0.008 4.008 10 H 0.036 0.964 11 C -0.126 4.126 12 C 0.051 3.949 13 N -0.533 5.533 14 C 0.080 3.920 15 H 0.034 0.966 16 C -0.143 4.143 17 C 0.063 3.937 18 O -0.369 6.369 19 C 0.091 3.909 20 C -0.166 4.166 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.121 4.121 24 C 0.064 3.936 25 H 0.266 0.734 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.257 -4.911 -4.591 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.546 4.546 8 H 0.049 0.951 9 C -0.027 4.027 10 H 0.054 0.946 11 C -0.165 4.165 12 C -0.076 4.076 13 N -0.257 5.257 14 C -0.029 4.029 15 H 0.052 0.948 16 C -0.181 4.181 17 C -0.013 4.013 18 O -0.288 6.288 19 C 0.050 3.950 20 C -0.204 4.204 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.159 4.159 24 C -0.064 4.064 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.125 -5.494 -4.517 22.290 hybrid contribution -0.685 1.774 0.016 1.902 sum 20.440 -3.720 -4.501 21.258 Atomic orbital electron populations 1.70058 1.08256 1.28091 1.52542 1.25965 0.95470 1.03001 0.94159 0.85763 0.79248 0.78681 0.79353 1.19223 1.21295 1.17202 1.21158 0.91053 0.92934 1.49436 0.95086 1.20360 0.94206 0.94822 0.93348 0.94579 1.22896 0.95591 0.99567 0.98408 1.22986 0.96281 0.95718 0.92624 1.63685 1.03920 1.52944 1.05172 1.21856 0.89936 0.97223 0.93841 0.94819 1.22223 0.94187 1.02767 0.98902 1.22699 0.97136 0.95134 0.86348 1.87856 1.50532 1.54337 1.36092 1.22316 0.86023 0.96846 0.89780 1.23502 1.01782 0.96870 0.98222 1.22744 0.99543 0.95467 0.98531 1.22990 1.01391 0.98974 0.92828 1.22048 0.97058 1.00422 0.96338 1.22667 0.92263 0.96029 0.95416 0.92504 0.92843 0.92179 0.89514 0.93202 0.89863 0.91020 0.86562 0.92632 0.89572 0.91094 0.89707 0.90123 0.90459 0.88235 0.91511 0.91343 0.93600 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.64 5.47 84.65 0.46 1.10 16 3 Si 0.95 43.85 27.03 68.60 1.85 45.71 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.63 6.77 99.48 0.67 -9.95 16 7 C -0.51 -28.96 8.85 25.60 0.23 -28.74 16 8 H 0.03 1.99 7.95 -2.91 -0.02 1.96 16 9 C -0.01 -0.35 2.60 -10.27 -0.03 -0.37 16 10 H 0.04 1.64 5.26 -2.39 -0.01 1.63 16 11 C -0.13 -5.11 6.53 32.07 0.21 -4.90 16 12 C 0.05 1.66 5.39 86.77 0.47 2.12 16 13 N -0.53 -18.23 5.03 -859.42 -4.32 -22.56 16 14 C 0.08 2.24 1.50 45.08 0.07 2.30 16 15 H 0.03 0.98 8.09 -2.39 -0.02 0.96 16 16 C -0.14 -3.25 5.15 30.66 0.16 -3.09 16 17 C 0.06 1.24 6.73 72.00 0.48 1.72 16 18 O -0.37 -8.65 10.45 -148.98 -1.56 -10.21 16 19 C 0.09 2.05 1.03 -10.59 -0.01 2.04 16 20 C -0.17 -3.35 7.12 31.02 0.22 -3.13 16 21 C -0.13 -2.16 8.02 31.16 0.25 -1.91 16 22 C -0.12 -2.40 7.47 31.01 0.23 -2.17 16 23 C -0.12 -3.22 4.39 30.64 0.13 -3.08 16 24 C 0.06 2.60 5.82 86.64 0.50 3.11 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.05 2.33 8.04 -2.39 -0.02 2.31 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 1.46 7.40 -2.39 -0.02 1.45 16 30 H 0.08 1.72 6.89 -2.39 -0.02 1.70 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.01 7.21 -2.39 -0.02 1.00 16 34 H 0.09 1.79 8.02 -2.39 -0.02 1.77 16 35 H 0.07 1.39 7.26 -2.38 -0.02 1.38 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.91 6.82 -2.39 -0.02 1.89 16 42 H 0.05 1.75 6.61 -2.39 -0.02 1.74 16 43 H 0.05 2.33 7.74 -2.39 -0.02 2.31 16 Total: -1.00 -64.46 322.31 0.58 -63.87 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.93 Total: 17.20 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 3.38 Total: -35.00 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -4.02 Total: -81.56 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.56 Total: -10.21 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.85 Total: 45.71 kcal Total: -64.46 0.58 -63.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397667881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.896 kcal (2) G-P(sol) polarization free energy of solvation -64.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds