Wall clock time and date at job start Mon Mar 30 2020 08:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47297 * 2 1 4 4 C 1.52996 * 109.47525 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47216 * 300.00438 * 4 3 2 6 6 C 1.50695 * 109.47227 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00160 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00019 * 179.97438 * 6 5 4 9 9 C 1.47424 * 125.65045 * 359.96374 * 8 6 5 10 10 C 1.54910 * 104.83304 * 204.16410 * 9 8 6 11 11 C 1.55154 * 101.58264 * 322.98797 * 10 9 8 12 12 H 1.09002 * 110.87384 * 277.07235 * 11 10 9 13 13 C 1.50696 * 110.72602 * 153.86479 * 11 10 9 14 14 H 1.07999 * 120.00319 * 246.48162 * 13 11 10 15 15 C 1.37885 * 119.99717 * 66.47545 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47033 * 125.64859 * 180.02562 * 8 6 5 22 22 C 1.53008 * 109.47133 * 59.99609 * 5 4 3 23 23 C 1.52995 * 109.46896 * 300.00081 * 22 5 4 24 24 H 1.09002 * 109.46813 * 59.99549 * 1 2 3 25 25 H 1.08999 * 109.46999 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46754 * 299.99855 * 1 2 3 27 27 H 1.09001 * 109.47169 * 240.00481 * 2 1 3 28 28 H 1.09002 * 109.47100 * 60.00357 * 3 2 1 29 29 H 1.09003 * 109.47742 * 300.00515 * 3 2 1 30 30 H 1.08995 * 109.47642 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46896 * 60.00509 * 4 3 2 32 32 H 1.09001 * 109.47246 * 299.99857 * 5 4 3 33 33 H 1.09006 * 110.36383 * 322.99924 * 9 8 6 34 34 H 1.08992 * 110.36838 * 85.32173 * 9 8 6 35 35 H 1.09003 * 111.00462 * 204.91424 * 10 9 8 36 36 H 1.08999 * 111.00856 * 81.05982 * 10 9 8 37 37 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.88059 * 59.48876 * 21 8 6 39 39 H 1.09004 * 110.00814 * 298.39431 * 21 8 6 40 40 H 1.09001 * 109.46853 * 60.00007 * 22 5 4 41 41 H 1.08991 * 109.47027 * 180.02562 * 22 5 4 42 42 H 1.08996 * 109.47575 * 300.00063 * 23 22 5 43 43 H 1.08997 * 109.46962 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0795 0.7214 1.2502 6 6 5.5865 0.7209 1.2505 7 8 6.1933 1.2460 0.3411 8 7 6.2600 0.1377 2.2618 9 6 5.6517 -0.5322 3.4257 10 6 6.7330 -0.4634 4.5328 11 6 8.0335 -0.6655 3.7110 12 1 8.2194 -1.7246 3.5325 13 6 9.2088 -0.0299 4.4078 14 1 9.7047 0.8205 3.9636 15 6 9.6510 -0.5340 5.6126 16 7 10.6765 0.0210 6.2210 17 14 8.7936 -2.0051 6.3807 18 1 7.6969 -1.5334 7.2639 19 1 8.2308 -2.8652 5.3089 20 1 9.7715 -2.7863 7.1799 21 6 7.7231 0.0654 2.3878 22 6 3.5695 -0.7212 1.2501 23 6 2.0396 -0.7211 1.2495 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9334 2.4701 0.0011 31 1 3.9337 0.9286 -0.8892 32 1 3.7159 1.2352 2.1400 33 1 4.7522 -0.0031 3.7406 34 1 5.4185 -1.5698 3.1871 35 1 6.6008 -1.2659 5.2585 36 1 6.7284 0.5098 5.0236 37 1 10.9873 -0.3334 7.0688 38 1 8.1432 1.0710 2.4121 39 1 8.1425 -0.4912 1.5497 40 1 3.9332 -1.2351 0.3603 41 1 3.9321 -1.2348 2.1404 42 1 1.6758 -0.2072 2.1392 43 1 1.6762 -1.7488 1.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397683294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:50 Heat of formation + Delta-G solvation = -65.495446 kcal Electronic energy + Delta-G solvation = -20897.076727 eV Core-core repulsion = 17940.677524 eV Total energy + Delta-G solvation = -2956.399202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18508 -38.21934 -36.83684 -33.25714 -32.64580 -31.07790 -30.57294 -28.65520 -27.14371 -24.95157 -22.97513 -22.58852 -21.50243 -20.04661 -19.67663 -18.81222 -17.15494 -16.60947 -15.77122 -15.19682 -14.85047 -14.47208 -14.40181 -14.32312 -13.64404 -13.23774 -13.08990 -12.92082 -12.70798 -12.46215 -12.34656 -12.04839 -11.93491 -11.66720 -11.53048 -11.21163 -11.07289 -10.97897 -10.87053 -10.73538 -10.42363 -10.19353 -10.10131 -9.99280 -9.66998 -9.27912 -9.17306 -8.64652 -8.11690 -6.15329 -4.16153 2.99395 3.20266 3.29358 3.31176 3.45449 4.33007 4.50005 4.51079 4.57572 4.93595 4.96826 5.02683 5.11491 5.26886 5.28677 5.34021 5.39730 5.42147 5.48051 5.59045 5.61524 5.62602 5.73498 5.75799 5.85319 5.94531 5.99632 6.04343 6.10148 6.11029 6.15088 6.26292 6.37139 6.41086 6.55406 6.64912 6.74608 6.91684 7.32487 7.62787 8.02043 8.42044 8.56811 8.88129 9.45111 10.97562 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.004467 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.068745 B = 6266.606710 C = 6827.579444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.113 4.113 4 C -0.098 4.098 5 C -0.101 4.101 6 C 0.525 3.475 7 O -0.552 6.552 8 N -0.611 5.611 9 C 0.098 3.902 10 C -0.141 4.141 11 C 0.007 3.993 12 H 0.043 0.957 13 C -0.512 4.512 14 H 0.077 0.923 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.264 1.264 20 H -0.291 1.291 21 C 0.121 3.879 22 C -0.119 4.119 23 C -0.111 4.111 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.265 0.735 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.110 -2.199 -8.247 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.122 4.122 6 C 0.313 3.687 7 O -0.430 6.430 8 N -0.344 5.344 9 C -0.025 4.025 10 C -0.179 4.179 11 C -0.012 4.012 12 H 0.061 0.939 13 C -0.550 4.550 14 H 0.095 0.905 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.707 3.293 18 H -0.201 1.201 19 H -0.189 1.189 20 H -0.218 1.218 21 C -0.001 4.001 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.688 -1.890 -8.630 21.580 hybrid contribution -0.323 -0.799 0.712 1.117 sum -20.012 -2.689 -7.919 21.689 Atomic orbital electron populations 1.21832 0.95413 1.01520 1.01655 1.21181 0.95197 0.96376 0.98611 1.21617 0.95387 0.96163 1.01910 1.21326 0.94457 1.00941 0.96855 1.21278 0.91771 0.98278 1.00902 1.20278 0.89511 0.77874 0.81018 1.90662 1.70466 1.45920 1.35975 1.48688 1.08654 1.55186 1.21897 1.22461 0.97036 0.96357 0.86634 1.23247 0.95898 1.02285 0.96488 1.20234 0.93593 0.96661 0.90706 0.93928 1.20903 1.12505 1.16274 1.05346 0.90505 1.24975 0.94597 0.96544 0.96776 1.69895 1.25401 1.41189 1.16972 0.86908 0.79354 0.83435 0.79609 1.20150 1.18876 1.21792 1.22110 0.77872 1.01437 0.98683 1.21680 0.95821 0.94898 1.03242 1.21579 0.94878 1.00402 0.97966 0.92835 0.92837 0.92737 0.91205 0.91974 0.91830 0.91284 0.91313 0.88930 0.91547 0.91906 0.91903 0.90319 0.92494 0.91417 0.92844 0.91566 0.90599 0.91776 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.10 -0.81 2.72 -90.62 -0.25 -1.06 16 3 C -0.11 -1.04 5.20 -26.74 -0.14 -1.18 16 4 C -0.10 -1.17 4.49 -26.73 -0.12 -1.29 16 5 C -0.10 -1.30 1.88 -91.77 -0.17 -1.47 16 6 C 0.52 9.23 7.21 -10.99 -0.08 9.15 16 7 O -0.55 -11.65 16.31 5.55 0.09 -11.56 16 8 N -0.61 -11.09 3.32 -170.51 -0.57 -11.66 16 9 C 0.10 1.54 5.14 -2.53 -0.01 1.52 16 10 C -0.14 -2.72 5.45 -24.58 -0.13 -2.86 16 11 C 0.01 0.17 2.33 -89.94 -0.21 -0.04 16 12 H 0.04 0.96 7.03 -51.93 -0.36 0.60 16 13 C -0.51 -13.87 9.05 -34.44 -0.31 -14.18 16 14 H 0.08 2.29 7.77 -52.49 -0.41 1.88 16 15 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 16 N -0.90 -26.73 13.96 55.43 0.77 -25.95 16 17 Si 0.88 20.49 24.81 -169.99 -4.22 16.27 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.26 -5.81 6.46 56.52 0.36 -5.44 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.12 2.53 6.45 -3.06 -0.02 2.51 16 22 C -0.12 -1.30 5.01 -26.73 -0.13 -1.43 16 23 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.09 1.10 7.84 -51.93 -0.41 0.69 16 33 H 0.07 0.87 7.36 -51.93 -0.38 0.49 16 34 H 0.06 0.88 7.07 -51.93 -0.37 0.52 16 35 H 0.06 1.18 5.61 -51.93 -0.29 0.89 16 36 H 0.08 1.59 8.04 -51.93 -0.42 1.18 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.55 7.63 -51.93 -0.40 1.15 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.83 5.00 -51.93 -0.26 0.57 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -30.44 323.15 -8.06 -38.50 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.53 Total: -0.26 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.47 Total: -10.21 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.21 Total: -37.61 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.22 Total: 16.27 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.44 -8.06 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397683294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.998 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds