Wall clock time and date at job start Mon Mar 30 2020 08:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47297 * 2 1 4 4 C 1.52996 * 109.47525 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47216 * 300.00438 * 4 3 2 6 6 C 1.50695 * 109.47227 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00160 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00019 * 179.97438 * 6 5 4 9 9 C 1.47424 * 125.65045 * 359.96374 * 8 6 5 10 10 C 1.54910 * 104.83304 * 204.16410 * 9 8 6 11 11 C 1.55154 * 101.58264 * 322.98797 * 10 9 8 12 12 H 1.09002 * 110.87384 * 277.07235 * 11 10 9 13 13 C 1.50696 * 110.72602 * 153.86479 * 11 10 9 14 14 H 1.07999 * 120.00319 * 246.48162 * 13 11 10 15 15 C 1.37885 * 119.99717 * 66.47545 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47033 * 125.64859 * 180.02562 * 8 6 5 22 22 C 1.53008 * 109.47133 * 59.99609 * 5 4 3 23 23 C 1.52995 * 109.46896 * 300.00081 * 22 5 4 24 24 H 1.09002 * 109.46813 * 59.99549 * 1 2 3 25 25 H 1.08999 * 109.46999 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46754 * 299.99855 * 1 2 3 27 27 H 1.09001 * 109.47169 * 240.00481 * 2 1 3 28 28 H 1.09002 * 109.47100 * 60.00357 * 3 2 1 29 29 H 1.09003 * 109.47742 * 300.00515 * 3 2 1 30 30 H 1.08995 * 109.47642 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46896 * 60.00509 * 4 3 2 32 32 H 1.09001 * 109.47246 * 299.99857 * 5 4 3 33 33 H 1.09006 * 110.36383 * 322.99924 * 9 8 6 34 34 H 1.08992 * 110.36838 * 85.32173 * 9 8 6 35 35 H 1.09003 * 111.00462 * 204.91424 * 10 9 8 36 36 H 1.08999 * 111.00856 * 81.05982 * 10 9 8 37 37 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.88059 * 59.48876 * 21 8 6 39 39 H 1.09004 * 110.00814 * 298.39431 * 21 8 6 40 40 H 1.09001 * 109.46853 * 60.00007 * 22 5 4 41 41 H 1.08991 * 109.47027 * 180.02562 * 22 5 4 42 42 H 1.08996 * 109.47575 * 300.00063 * 23 22 5 43 43 H 1.08997 * 109.46962 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0795 0.7214 1.2502 6 6 5.5865 0.7209 1.2505 7 8 6.1933 1.2460 0.3411 8 7 6.2600 0.1377 2.2618 9 6 5.6517 -0.5322 3.4257 10 6 6.7330 -0.4634 4.5328 11 6 8.0335 -0.6655 3.7110 12 1 8.2194 -1.7246 3.5325 13 6 9.2088 -0.0299 4.4078 14 1 9.7047 0.8205 3.9636 15 6 9.6510 -0.5340 5.6126 16 7 10.6765 0.0210 6.2210 17 14 8.7936 -2.0051 6.3807 18 1 7.6969 -1.5334 7.2639 19 1 8.2308 -2.8652 5.3089 20 1 9.7715 -2.7863 7.1799 21 6 7.7231 0.0654 2.3878 22 6 3.5695 -0.7212 1.2501 23 6 2.0396 -0.7211 1.2495 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9334 2.4701 0.0011 31 1 3.9337 0.9286 -0.8892 32 1 3.7159 1.2352 2.1400 33 1 4.7522 -0.0031 3.7406 34 1 5.4185 -1.5698 3.1871 35 1 6.6008 -1.2659 5.2585 36 1 6.7284 0.5098 5.0236 37 1 10.9873 -0.3334 7.0688 38 1 8.1432 1.0710 2.4121 39 1 8.1425 -0.4912 1.5497 40 1 3.9332 -1.2351 0.3603 41 1 3.9321 -1.2348 2.1404 42 1 1.6758 -0.2072 2.1392 43 1 1.6762 -1.7488 1.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397683294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:49 Heat of formation + Delta-G solvation = -84.025617 kcal Electronic energy + Delta-G solvation = -20897.880255 eV Core-core repulsion = 17940.677524 eV Total energy + Delta-G solvation = -2957.202731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46319 -39.31057 -38.29328 -35.02190 -33.81682 -32.51891 -31.60328 -30.18701 -28.17968 -26.58297 -24.26773 -23.52728 -22.55057 -21.48111 -20.72702 -20.16123 -19.08468 -17.99087 -17.05242 -16.57248 -16.35184 -16.01750 -15.20203 -15.12660 -14.91009 -14.82418 -14.44114 -14.13920 -13.98769 -13.66209 -13.35702 -13.27871 -13.04719 -12.97737 -12.81947 -12.62299 -12.32275 -11.98979 -11.91872 -11.89049 -11.62507 -11.54089 -11.52066 -11.23876 -11.15501 -10.86433 -10.72860 -10.63437 -9.62657 -8.29467 -6.36946 1.36655 1.42106 1.52261 1.61832 2.05415 2.36482 3.04397 3.44866 3.70356 3.77798 3.88406 3.97120 4.16697 4.19048 4.26164 4.28505 4.38196 4.43219 4.52945 4.56930 4.61336 4.68688 4.69792 4.87768 4.91892 4.96371 5.03965 5.06453 5.11422 5.16020 5.17402 5.20847 5.24285 5.28610 5.35799 5.46934 5.48492 5.57615 5.64342 5.64824 6.25397 6.62296 6.68265 7.15166 7.28662 8.87528 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.004467 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.068745 B = 6266.606710 C = 6827.579444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.106 4.106 4 C -0.096 4.096 5 C -0.091 4.091 6 C 0.518 3.482 7 O -0.597 6.597 8 N -0.614 5.614 9 C 0.104 3.896 10 C -0.138 4.138 11 C 0.006 3.994 12 H 0.051 0.949 13 C -0.523 4.523 14 H 0.024 0.976 15 C 0.012 3.988 16 N -0.952 5.952 17 Si 0.949 3.051 18 H -0.253 1.253 19 H -0.235 1.235 20 H -0.297 1.297 21 C 0.127 3.873 22 C -0.115 4.115 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.267 0.733 38 H 0.033 0.967 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.332 -4.397 -7.522 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.112 4.112 6 C 0.309 3.691 7 O -0.479 6.479 8 N -0.346 5.346 9 C -0.018 4.018 10 C -0.177 4.177 11 C -0.013 4.013 12 H 0.069 0.931 13 C -0.561 4.561 14 H 0.042 0.958 15 C -0.185 4.185 16 N -0.592 5.592 17 Si 0.772 3.228 18 H -0.178 1.178 19 H -0.158 1.158 20 H -0.224 1.224 21 C 0.004 3.996 22 C -0.152 4.152 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.953 -4.089 -7.918 25.557 hybrid contribution 1.120 0.010 0.392 1.187 sum -22.833 -4.079 -7.526 24.385 Atomic orbital electron populations 1.21792 0.94049 1.02123 1.02095 1.21181 0.96266 0.95503 0.98446 1.21583 0.92776 0.97199 1.02817 1.21308 0.96706 0.99550 0.95896 1.21341 0.87567 1.00331 1.01988 1.21295 0.91530 0.76417 0.79903 1.90639 1.71837 1.47669 1.37721 1.48770 1.07166 1.55625 1.23074 1.22655 0.96681 0.98481 0.83934 1.23118 0.94976 1.02089 0.97471 1.20123 0.93477 0.96347 0.91349 0.93119 1.21135 1.14081 1.15061 1.05807 0.95789 1.25974 0.95242 1.00144 0.97181 1.70073 1.27740 1.43598 1.17768 0.85792 0.78534 0.79123 0.79346 1.17765 1.15786 1.22389 1.21768 0.80419 0.99237 0.98193 1.21688 0.97566 0.92886 1.03100 1.21571 0.92813 1.01494 0.98401 0.92625 0.92174 0.92134 0.91963 0.90861 0.91187 0.93000 0.93039 0.86926 0.87782 0.88836 0.90188 0.91907 0.92389 0.94892 0.93284 0.92696 0.89789 0.90496 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 71.98 0.66 -0.85 16 2 C -0.10 -1.30 2.72 -10.79 -0.03 -1.33 16 3 C -0.11 -1.67 5.20 30.59 0.16 -1.51 16 4 C -0.10 -2.20 4.49 30.59 0.14 -2.07 16 5 C -0.09 -2.13 1.88 -11.54 -0.02 -2.15 16 6 C 0.52 17.85 7.21 87.66 0.63 18.49 16 7 O -0.60 -25.95 16.31 -3.04 -0.05 -26.00 16 8 N -0.61 -21.51 3.32 -811.76 -2.70 -24.21 16 9 C 0.10 2.83 5.14 86.86 0.45 3.27 16 10 C -0.14 -4.96 5.45 31.99 0.17 -4.78 16 11 C 0.01 0.28 2.33 -10.35 -0.02 0.26 16 12 H 0.05 2.18 7.03 -2.39 -0.02 2.17 16 13 C -0.52 -29.49 9.05 25.60 0.23 -29.26 16 14 H 0.02 1.54 7.77 -2.91 -0.02 1.52 16 15 C 0.01 0.66 5.46 84.66 0.46 1.12 16 16 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 17 Si 0.95 41.12 24.81 68.60 1.70 42.83 16 18 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.23 -9.02 6.46 99.48 0.64 -8.38 16 20 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 21 C 0.13 5.47 6.45 86.73 0.56 6.03 16 22 C -0.11 -2.09 5.01 30.60 0.15 -1.94 16 23 C -0.11 -1.38 5.20 30.59 0.16 -1.22 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 31 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.11 2.23 7.84 -2.39 -0.02 2.21 16 33 H 0.10 2.13 7.36 -2.38 -0.02 2.12 16 34 H 0.09 2.08 7.07 -2.39 -0.02 2.06 16 35 H 0.08 2.62 5.61 -2.39 -0.01 2.60 16 36 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.03 1.61 7.63 -2.39 -0.02 1.60 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.40 5.00 -2.39 -0.01 1.39 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -71.07 323.15 3.85 -67.22 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.90 Total: 14.70 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 3.70 Total: -15.93 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.40 Total: -82.82 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.70 Total: 42.83 kcal Total: -71.07 3.85 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397683294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.806 kcal (2) G-P(sol) polarization free energy of solvation -71.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds