Wall clock time and date at job start Mon Mar 30 2020 08:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47031 * 2 1 4 4 C 1.53003 * 109.46781 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47242 * 59.99950 * 4 3 2 6 6 C 1.50701 * 109.47416 * 59.99891 * 5 4 3 7 7 O 1.21276 * 119.99911 * 241.88689 * 6 5 4 8 8 N 1.34779 * 119.99810 * 62.15960 * 6 5 4 9 9 C 1.47422 * 125.64788 * 4.78053 * 8 6 5 10 10 C 1.55124 * 104.72174 * 155.81284 * 9 8 6 11 11 C 1.55160 * 101.48462 * 37.29390 * 10 9 8 12 12 H 1.09001 * 110.71668 * 82.70054 * 11 10 9 13 13 C 1.50700 * 110.71766 * 205.96556 * 11 10 9 14 14 H 1.08002 * 120.00040 * 113.52572 * 13 11 10 15 15 C 1.37876 * 120.00279 * 293.52410 * 13 11 10 16 16 N 1.31511 * 120.00129 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00053 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47333 * 89.99689 * 17 15 13 19 19 H 1.48504 * 109.46877 * 209.99932 * 17 15 13 20 20 H 1.48500 * 109.46830 * 329.99435 * 17 15 13 21 21 C 1.47015 * 125.64636 * 185.08332 * 8 6 5 22 22 C 1.53005 * 109.47273 * 299.99748 * 5 4 3 23 23 C 1.52995 * 109.46865 * 60.00160 * 22 5 4 24 24 H 1.08995 * 109.47335 * 60.00145 * 1 2 3 25 25 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46836 * 300.00057 * 1 2 3 27 27 H 1.09003 * 109.47210 * 120.00135 * 2 1 3 28 28 H 1.08995 * 109.46698 * 60.00192 * 3 2 1 29 29 H 1.08995 * 109.46942 * 300.00096 * 3 2 1 30 30 H 1.09003 * 109.46944 * 299.99819 * 4 3 2 31 31 H 1.08998 * 109.46975 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47160 * 179.97438 * 5 4 3 33 33 H 1.08999 * 110.36723 * 274.74708 * 9 8 6 34 34 H 1.09006 * 110.36614 * 37.06517 * 9 8 6 35 35 H 1.09001 * 111.19452 * 279.18836 * 10 9 8 36 36 H 1.09010 * 110.94067 * 155.28616 * 10 9 8 37 37 H 0.97001 * 120.00434 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.88315 * 300.44041 * 21 8 6 39 39 H 1.08994 * 109.88596 * 61.60938 * 21 8 6 40 40 H 1.09002 * 109.47357 * 180.02562 * 22 5 4 41 41 H 1.09003 * 109.47234 * 300.00327 * 22 5 4 42 42 H 1.09006 * 109.46882 * 180.02562 * 23 22 5 43 43 H 1.08995 * 109.47184 * 60.00340 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7214 -1.2501 6 6 3.5767 1.4320 -2.4803 7 8 2.8512 0.8531 -3.2609 8 7 3.9378 2.7090 -2.7158 9 6 4.8922 3.4941 -1.9121 10 6 5.4243 4.5810 -2.8827 11 6 4.1483 4.9180 -3.6986 12 1 3.5242 5.6319 -3.1611 13 6 4.5117 5.4462 -5.0624 14 1 4.2684 4.8741 -5.9456 15 6 5.1546 6.6599 -5.1828 16 7 5.4504 7.3569 -4.1075 17 14 5.6044 7.3150 -6.8734 18 1 4.4851 8.1369 -7.3997 19 1 6.8272 8.1514 -6.7709 20 1 5.8585 6.1774 -7.7935 21 6 3.4404 3.5515 -3.8131 22 6 3.5695 -0.7211 -1.2501 23 6 2.0395 -0.7211 -1.2495 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9337 0.9285 0.8892 31 1 3.9334 2.4701 -0.0002 32 1 5.1696 0.7218 -1.2508 33 1 4.3852 3.9547 -1.0642 34 1 5.7096 2.8605 -1.5679 35 1 6.2073 4.1835 -3.5284 36 1 5.7788 5.4535 -2.3338 37 1 5.9024 8.2110 -4.1922 38 1 3.6778 3.0902 -4.7717 39 1 2.3625 3.6836 -3.7198 40 1 3.9328 -1.2350 -2.1401 41 1 3.9332 -1.2351 -0.3603 42 1 1.6762 -1.7488 -1.2491 43 1 1.6759 -0.2072 -2.1393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397683296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:54 Heat of formation + Delta-G solvation = -66.397792 kcal Electronic energy + Delta-G solvation = -21271.644493 eV Core-core repulsion = 18315.206162 eV Total energy + Delta-G solvation = -2956.438331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31941 -37.80966 -36.38420 -33.23431 -32.57970 -30.82302 -30.00551 -28.39999 -26.74001 -24.87699 -23.00269 -22.50489 -21.26992 -20.27117 -19.54662 -18.24632 -16.77221 -16.11506 -15.84370 -14.89358 -14.75520 -14.54607 -14.21191 -14.12035 -13.43712 -13.07702 -12.96412 -12.53692 -12.49339 -12.12254 -11.96877 -11.87281 -11.54459 -11.45834 -11.24616 -11.18657 -11.00617 -10.90629 -10.79367 -10.50395 -10.42481 -10.04468 -9.92375 -9.79259 -9.48258 -9.02568 -8.95182 -8.49250 -7.92643 -6.11755 -4.14686 3.12087 3.27070 3.33990 3.37698 3.62641 4.38276 4.68163 4.74110 4.80620 5.00223 5.17228 5.21655 5.32144 5.41487 5.48004 5.55380 5.59654 5.65100 5.74569 5.83409 5.85304 5.87182 5.95386 6.00935 6.06786 6.10967 6.23998 6.27412 6.32324 6.34041 6.39794 6.43079 6.65530 6.74494 6.87202 7.00429 7.12458 7.44103 7.69271 7.87281 8.20675 8.28383 8.71904 8.87410 9.50264 10.98262 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037467 B = 0.004453 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.138237 B = 6286.868595 C = 6381.493514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.116 4.116 4 C -0.114 4.114 5 C -0.105 4.105 6 C 0.528 3.472 7 O -0.551 6.551 8 N -0.609 5.609 9 C 0.092 3.908 10 C -0.111 4.111 11 C 0.044 3.956 12 H 0.041 0.959 13 C -0.515 4.515 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.111 3.889 22 C -0.094 4.094 23 C -0.129 4.129 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -11.645 10.609 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.154 4.154 4 C -0.151 4.151 5 C -0.127 4.127 6 C 0.317 3.683 7 O -0.431 6.431 8 N -0.342 5.342 9 C -0.030 4.030 10 C -0.149 4.149 11 C 0.025 3.975 12 H 0.060 0.940 13 C -0.553 4.553 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.011 4.011 22 C -0.132 4.132 23 C -0.167 4.167 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.281 -11.845 10.259 16.010 hybrid contribution 0.423 0.536 -0.808 1.058 sum -2.858 -11.309 9.451 15.013 Atomic orbital electron populations 1.21813 0.95606 1.01301 1.01617 1.21127 0.95240 0.96011 0.98452 1.21604 0.95105 0.96618 1.02037 1.21589 0.96260 1.01051 0.96218 1.21301 1.01184 0.96368 0.93798 1.20149 0.80777 0.80543 0.86873 1.90559 1.38642 1.65327 1.48576 1.48728 1.43722 1.11455 1.30251 1.22629 0.91150 0.94168 0.95077 1.22821 0.99881 0.95677 0.96563 1.19711 0.91911 0.89392 0.96477 0.94040 1.21041 1.38357 1.04260 0.91626 0.92306 1.24945 0.95493 0.96534 0.96703 1.69937 1.41059 1.13793 1.27926 0.86571 0.77965 0.78967 0.84410 1.20595 1.21206 1.19837 1.22308 0.97361 0.92580 0.88816 1.21279 0.96578 0.93909 1.01461 1.21878 0.95103 1.00114 0.99563 0.92617 0.92987 0.93071 0.91859 0.92038 0.91798 0.91272 0.90798 0.89223 0.92207 0.92306 0.92214 0.90098 0.92890 0.92193 0.93526 0.91639 0.92018 0.92834 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.04 2.72 -90.62 -0.25 -1.29 16 3 C -0.12 -1.45 4.99 -26.73 -0.13 -1.58 16 4 C -0.11 -1.35 5.32 -26.73 -0.14 -1.50 16 5 C -0.11 -1.43 2.39 -91.77 -0.22 -1.65 16 6 C 0.53 9.48 5.68 -10.98 -0.06 9.42 16 7 O -0.55 -11.47 13.93 5.56 0.08 -11.40 16 8 N -0.61 -11.54 3.32 -170.39 -0.56 -12.11 16 9 C 0.09 1.59 5.40 -2.41 -0.01 1.57 16 10 C -0.11 -2.35 5.96 -24.46 -0.15 -2.50 16 11 C 0.04 1.05 2.78 -89.94 -0.25 0.80 16 12 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.51 -13.65 8.47 -34.44 -0.29 -13.94 16 14 H 0.06 1.57 7.53 -52.49 -0.40 1.17 16 15 C 0.07 1.75 5.36 -17.82 -0.10 1.65 16 16 N -0.89 -24.33 12.50 55.43 0.69 -23.64 16 17 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.11 2.41 6.46 -3.07 -0.02 2.39 16 22 C -0.09 -1.19 5.10 -26.73 -0.14 -1.33 16 23 C -0.13 -1.70 4.91 -26.73 -0.13 -1.83 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.97 7.21 -51.93 -0.37 0.60 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.91 5.42 -51.93 -0.28 0.62 16 32 H 0.09 1.12 7.67 -51.92 -0.40 0.72 16 33 H 0.06 0.95 6.97 -51.93 -0.36 0.59 16 34 H 0.06 0.87 7.44 -51.93 -0.39 0.48 16 35 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 36 H 0.08 1.80 7.77 -51.92 -0.40 1.40 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.06 1.39 7.63 -51.93 -0.40 0.99 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.58 5.44 -51.93 -0.28 1.30 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -28.22 324.29 -8.96 -37.18 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.48 Total: 0.35 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.55 Total: -11.01 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.13 Total: -35.74 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.22 -8.96 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397683296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.218 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds