Wall clock time and date at job start Mon Mar 30 2020 08:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47031 * 2 1 4 4 C 1.53003 * 109.46781 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47242 * 59.99950 * 4 3 2 6 6 C 1.50701 * 109.47416 * 59.99891 * 5 4 3 7 7 O 1.21276 * 119.99911 * 241.88689 * 6 5 4 8 8 N 1.34779 * 119.99810 * 62.15960 * 6 5 4 9 9 C 1.47422 * 125.64788 * 4.78053 * 8 6 5 10 10 C 1.55124 * 104.72174 * 155.81284 * 9 8 6 11 11 C 1.55160 * 101.48462 * 37.29390 * 10 9 8 12 12 H 1.09001 * 110.71668 * 82.70054 * 11 10 9 13 13 C 1.50700 * 110.71766 * 205.96556 * 11 10 9 14 14 H 1.08002 * 120.00040 * 113.52572 * 13 11 10 15 15 C 1.37876 * 120.00279 * 293.52410 * 13 11 10 16 16 N 1.31511 * 120.00129 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00053 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47333 * 89.99689 * 17 15 13 19 19 H 1.48504 * 109.46877 * 209.99932 * 17 15 13 20 20 H 1.48500 * 109.46830 * 329.99435 * 17 15 13 21 21 C 1.47015 * 125.64636 * 185.08332 * 8 6 5 22 22 C 1.53005 * 109.47273 * 299.99748 * 5 4 3 23 23 C 1.52995 * 109.46865 * 60.00160 * 22 5 4 24 24 H 1.08995 * 109.47335 * 60.00145 * 1 2 3 25 25 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46836 * 300.00057 * 1 2 3 27 27 H 1.09003 * 109.47210 * 120.00135 * 2 1 3 28 28 H 1.08995 * 109.46698 * 60.00192 * 3 2 1 29 29 H 1.08995 * 109.46942 * 300.00096 * 3 2 1 30 30 H 1.09003 * 109.46944 * 299.99819 * 4 3 2 31 31 H 1.08998 * 109.46975 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47160 * 179.97438 * 5 4 3 33 33 H 1.08999 * 110.36723 * 274.74708 * 9 8 6 34 34 H 1.09006 * 110.36614 * 37.06517 * 9 8 6 35 35 H 1.09001 * 111.19452 * 279.18836 * 10 9 8 36 36 H 1.09010 * 110.94067 * 155.28616 * 10 9 8 37 37 H 0.97001 * 120.00434 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.88315 * 300.44041 * 21 8 6 39 39 H 1.08994 * 109.88596 * 61.60938 * 21 8 6 40 40 H 1.09002 * 109.47357 * 180.02562 * 22 5 4 41 41 H 1.09003 * 109.47234 * 300.00327 * 22 5 4 42 42 H 1.09006 * 109.46882 * 180.02562 * 23 22 5 43 43 H 1.08995 * 109.47184 * 60.00340 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7214 -1.2501 6 6 3.5767 1.4320 -2.4803 7 8 2.8512 0.8531 -3.2609 8 7 3.9378 2.7090 -2.7158 9 6 4.8922 3.4941 -1.9121 10 6 5.4243 4.5810 -2.8827 11 6 4.1483 4.9180 -3.6986 12 1 3.5242 5.6319 -3.1611 13 6 4.5117 5.4462 -5.0624 14 1 4.2684 4.8741 -5.9456 15 6 5.1546 6.6599 -5.1828 16 7 5.4504 7.3569 -4.1075 17 14 5.6044 7.3150 -6.8734 18 1 4.4851 8.1369 -7.3997 19 1 6.8272 8.1514 -6.7709 20 1 5.8585 6.1774 -7.7935 21 6 3.4404 3.5515 -3.8131 22 6 3.5695 -0.7211 -1.2501 23 6 2.0395 -0.7211 -1.2495 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9337 0.9285 0.8892 31 1 3.9334 2.4701 -0.0002 32 1 5.1696 0.7218 -1.2508 33 1 4.3852 3.9547 -1.0642 34 1 5.7096 2.8605 -1.5679 35 1 6.2073 4.1835 -3.5284 36 1 5.7788 5.4535 -2.3338 37 1 5.9024 8.2110 -4.1922 38 1 3.6778 3.0902 -4.7717 39 1 2.3625 3.6836 -3.7198 40 1 3.9328 -1.2350 -2.1401 41 1 3.9332 -1.2351 -0.3603 42 1 1.6762 -1.7488 -1.2491 43 1 1.6759 -0.2072 -2.1393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397683296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:54 Heat of formation + Delta-G solvation = -81.176744 kcal Electronic energy + Delta-G solvation = -21272.285357 eV Core-core repulsion = 18315.206162 eV Total energy + Delta-G solvation = -2957.079194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62178 -39.18441 -37.83868 -35.03497 -33.77781 -32.16550 -31.36015 -30.06388 -27.91130 -26.62540 -24.45058 -23.53159 -22.52445 -21.59739 -21.08233 -19.65237 -18.61770 -17.59806 -17.14967 -16.52661 -16.19684 -16.13247 -15.20830 -15.16302 -14.73127 -14.53218 -14.36221 -14.02088 -13.95571 -13.30981 -13.21270 -13.14209 -12.98504 -12.85962 -12.77043 -12.61630 -12.44961 -12.36361 -12.28872 -11.87723 -11.62174 -11.49419 -11.35817 -11.00140 -10.95923 -10.84410 -10.52149 -10.38585 -9.50335 -8.17645 -6.26664 1.41034 1.42769 1.52290 1.72474 2.16148 2.43244 3.14351 3.55626 3.74714 3.84799 3.95583 4.06503 4.21547 4.25629 4.37438 4.43771 4.46139 4.50154 4.54376 4.65758 4.69477 4.72681 4.78999 4.82394 4.93444 4.99256 5.07052 5.12290 5.15831 5.17502 5.27365 5.30156 5.37792 5.40715 5.44635 5.47677 5.56543 5.72489 5.76528 5.86066 6.27471 6.73491 6.79738 7.27916 7.40862 8.91741 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037467 B = 0.004453 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.138237 B = 6286.868595 C = 6381.493514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.110 4.110 5 C -0.099 4.099 6 C 0.522 3.478 7 O -0.586 6.586 8 N -0.614 5.614 9 C 0.105 3.895 10 C -0.103 4.103 11 C 0.040 3.960 12 H 0.018 0.982 13 C -0.537 4.537 14 H 0.047 0.953 15 C 0.024 3.976 16 N -0.911 5.911 17 Si 0.952 3.048 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.273 1.273 21 C 0.123 3.877 22 C -0.093 4.093 23 C -0.130 4.130 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.264 0.736 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 -12.870 12.840 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.155 4.155 4 C -0.147 4.147 5 C -0.120 4.120 6 C 0.313 3.687 7 O -0.468 6.468 8 N -0.347 5.347 9 C -0.016 4.016 10 C -0.142 4.142 11 C 0.020 3.980 12 H 0.036 0.964 13 C -0.575 4.575 14 H 0.066 0.934 15 C -0.176 4.176 16 N -0.549 5.549 17 Si 0.778 3.222 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.198 1.198 21 C 0.000 4.000 22 C -0.131 4.131 23 C -0.168 4.168 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.247 -13.078 12.506 18.234 hybrid contribution 0.026 0.901 -1.537 1.782 sum -2.221 -12.177 10.969 16.539 Atomic orbital electron populations 1.21814 0.95476 1.01886 1.01136 1.21129 0.95436 0.95357 0.98480 1.21619 0.95930 0.97051 1.00905 1.21635 0.95461 1.01205 0.96416 1.21417 1.02330 0.96419 0.91858 1.21154 0.79880 0.79800 0.87880 1.90560 1.40068 1.65963 1.50185 1.48798 1.44244 1.11960 1.29682 1.22618 0.91789 0.93287 0.93943 1.22593 0.98121 0.96681 0.96766 1.19610 0.93105 0.89640 0.95596 0.96381 1.21315 1.38828 1.04854 0.92541 0.93434 1.25607 0.95354 0.96657 1.00005 1.70019 1.41395 1.14041 1.29470 0.85646 0.77868 0.78276 0.80415 1.20214 1.20394 1.19809 1.21913 0.96750 0.92164 0.89208 1.21326 0.95942 0.93338 1.02487 1.21824 0.95832 1.00407 0.98722 0.94929 0.91897 0.91721 0.89166 0.90427 0.95676 0.87686 0.90953 0.87004 0.90360 0.88606 0.93634 0.91255 0.92684 0.94414 0.94390 0.93079 0.88407 0.91757 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.19 71.98 0.66 -2.26 16 2 C -0.09 -1.76 2.72 -10.79 -0.03 -1.79 16 3 C -0.12 -2.67 4.99 30.60 0.15 -2.52 16 4 C -0.11 -2.19 5.32 30.59 0.16 -2.03 16 5 C -0.10 -2.41 2.39 -11.54 -0.03 -2.44 16 6 C 0.52 18.53 5.68 87.66 0.50 19.03 16 7 O -0.59 -25.13 13.93 -3.02 -0.04 -25.18 16 8 N -0.61 -23.22 3.32 -811.40 -2.69 -25.91 16 9 C 0.11 3.44 5.40 86.93 0.47 3.91 16 10 C -0.10 -4.40 5.96 32.06 0.19 -4.21 16 11 C 0.04 1.95 2.78 -10.35 -0.03 1.92 16 12 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 13 C -0.54 -29.43 8.47 25.60 0.22 -29.21 16 14 H 0.05 2.64 7.53 -2.91 -0.02 2.62 16 15 C 0.02 1.29 5.36 84.66 0.45 1.75 16 16 N -0.91 -50.41 12.50 21.45 0.27 -50.14 16 17 Si 0.95 42.99 29.54 68.60 2.03 45.01 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.12 5.57 6.46 86.73 0.56 6.13 16 22 C -0.09 -2.09 5.10 30.59 0.16 -1.93 16 23 C -0.13 -3.24 4.91 30.59 0.15 -3.09 16 24 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.02 0.75 7.21 -2.39 -0.02 0.74 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.49 5.42 -2.39 -0.01 1.47 16 32 H 0.11 2.28 7.67 -2.38 -0.02 2.26 16 33 H 0.08 2.31 6.97 -2.39 -0.02 2.29 16 34 H 0.10 2.47 7.44 -2.38 -0.02 2.45 16 35 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 36 H 0.07 3.10 7.77 -2.38 -0.02 3.09 16 37 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 38 H 0.04 1.85 7.63 -2.39 -0.02 1.83 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.29 8.12 -2.39 -0.02 1.27 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.06 1.86 5.44 -2.39 -0.01 1.85 16 Total: -1.00 -63.79 324.29 4.11 -59.68 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.96 Total: 13.28 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 3.59 Total: -16.75 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -2.42 Total: -76.04 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.79 4.11 -59.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397683296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.500 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds