Wall clock time and date at job start Mon Mar 30 2020 08:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47382 * 2 1 4 4 O 1.21280 * 120.00076 * 121.69806 * 3 2 1 5 5 N 1.34777 * 119.99905 * 301.69912 * 3 2 1 6 6 C 1.47024 * 125.64726 * 355.39239 * 5 3 2 7 7 C 1.54330 * 107.26683 * 181.02626 * 6 5 3 8 8 C 1.55158 * 102.94449 * 22.18957 * 7 6 5 9 9 H 1.08994 * 111.03498 * 82.58776 * 8 7 6 10 10 C 1.50694 * 111.00038 * 206.42399 * 8 7 6 11 11 H 1.07997 * 120.00111 * 112.19897 * 10 8 7 12 12 C 1.37879 * 120.00144 * 292.19453 * 10 8 7 13 13 N 1.31512 * 119.99762 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00034 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46992 * 270.00314 * 14 12 10 16 16 H 1.48493 * 109.47239 * 150.00236 * 14 12 10 17 17 H 1.48500 * 109.47022 * 29.99944 * 14 12 10 18 18 C 1.47425 * 125.64515 * 175.34962 * 5 3 2 19 19 C 1.53001 * 109.47105 * 119.99914 * 2 1 3 20 20 C 1.52998 * 109.47471 * 180.02562 * 19 2 1 21 21 C 1.53003 * 109.46943 * 300.00170 * 20 19 2 22 22 C 1.53001 * 109.47176 * 59.99649 * 21 20 19 23 23 C 1.52997 * 109.47263 * 239.99719 * 2 1 3 24 24 H 1.08999 * 109.46889 * 69.65184 * 1 2 3 25 25 H 1.08991 * 109.47322 * 189.65373 * 1 2 3 26 26 H 1.09004 * 109.46873 * 309.65612 * 1 2 3 27 27 H 1.08998 * 109.88025 * 300.44101 * 6 5 3 28 28 H 1.08991 * 109.88338 * 61.45331 * 6 5 3 29 29 H 1.08997 * 110.71316 * 263.82538 * 7 6 5 30 30 H 1.08999 * 110.71612 * 140.55971 * 7 6 5 31 31 H 0.96998 * 120.00521 * 359.97438 * 13 12 10 32 32 H 1.08996 * 110.37230 * 37.07199 * 18 5 3 33 33 H 1.08995 * 110.36636 * 274.74207 * 18 5 3 34 34 H 1.09005 * 109.47195 * 300.00594 * 19 2 1 35 35 H 1.09002 * 109.46932 * 59.99776 * 19 2 1 36 36 H 1.08998 * 109.46944 * 180.02562 * 20 19 2 37 37 H 1.09000 * 109.46778 * 59.99915 * 20 19 2 38 38 H 1.09002 * 109.46917 * 299.99974 * 21 20 19 39 39 H 1.08995 * 109.46944 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.47100 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.46932 * 60.00334 * 22 21 20 42 42 H 1.09002 * 109.47123 * 300.00437 * 23 2 1 43 43 H 1.09002 * 109.46717 * 60.00240 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.7549 1.8085 0.8936 5 7 1.6788 2.2606 -0.9931 6 6 0.8922 1.8992 -2.1815 7 6 0.7590 3.1703 -3.0466 8 6 1.9565 4.0377 -2.5764 9 1 2.8760 3.7417 -3.0811 10 6 1.6766 5.5036 -2.7859 11 1 1.5482 6.1558 -1.9347 12 6 1.5846 6.0121 -4.0641 13 7 1.7406 5.2178 -5.1006 14 14 1.2384 7.8293 -4.3237 15 1 -0.2285 8.0481 -4.3980 16 1 1.8705 8.2777 -5.5904 17 1 1.7979 8.6069 -3.1890 18 6 2.0160 3.6938 -1.0671 19 6 2.0400 -0.7212 1.2493 20 6 3.5700 -0.7207 1.2497 21 6 4.0805 -1.4416 0.0004 22 6 3.5705 -0.7204 -1.2489 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.3573 -0.9635 25 1 -0.3633 -1.0130 0.1723 26 1 -0.3633 0.6559 0.7912 27 1 1.4070 1.1202 -2.7439 28 1 -0.0946 1.5480 -1.8801 29 1 -0.1856 3.6758 -2.8462 30 1 0.8507 2.9275 -4.1052 31 1 1.9208 4.2743 -4.9659 32 1 3.0190 3.8683 -0.6777 33 1 1.2855 4.2844 -0.5144 34 1 1.6766 -0.2074 2.1393 35 1 1.6766 -1.7489 1.2493 36 1 3.9332 -1.2349 2.1394 37 1 3.9329 0.3071 1.2499 38 1 3.7175 -2.4694 0.0002 39 1 5.1705 -1.4409 0.0005 40 1 3.9338 -1.2342 -2.1388 41 1 3.9335 0.3074 -1.2486 42 1 1.6766 -1.7490 -1.2492 43 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397695345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:59 Heat of formation + Delta-G solvation = -56.494062 kcal Electronic energy + Delta-G solvation = -21716.243802 eV Core-core repulsion = 18760.234929 eV Total energy + Delta-G solvation = -2956.008873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70216 -37.77364 -36.44830 -33.64368 -32.66085 -30.82813 -29.86056 -28.46135 -26.51276 -24.76855 -23.48982 -22.57186 -21.23227 -20.53267 -19.93131 -18.43916 -16.92551 -16.14205 -15.72107 -15.36796 -14.62097 -14.35000 -14.05557 -13.85486 -13.70670 -13.61364 -12.84360 -12.59026 -12.51083 -12.26395 -12.07823 -11.92647 -11.73401 -11.64587 -11.48077 -11.25027 -10.97358 -10.88102 -10.71150 -10.49298 -10.15722 -10.06674 -9.94018 -9.88603 -9.66842 -9.06212 -8.61918 -8.43294 -8.02044 -6.43604 -4.16278 3.02674 3.39888 3.43302 3.50921 3.59480 4.47296 4.54725 4.65615 4.76648 5.01927 5.17396 5.22715 5.27783 5.34919 5.42805 5.47185 5.49557 5.55802 5.61420 5.63784 5.81242 5.84363 5.85664 5.94437 6.04820 6.06779 6.16590 6.19868 6.27532 6.30502 6.34675 6.41001 6.49047 6.65060 6.68795 6.78770 6.90292 7.07101 7.45881 8.07438 8.10969 8.34992 8.62163 8.77963 9.55480 10.95166 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.004909 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.497919 B = 5702.742540 C = 5737.160298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C 0.536 3.464 4 O -0.550 6.550 5 N -0.609 5.609 6 C 0.087 3.913 7 C -0.128 4.128 8 C 0.030 3.970 9 H 0.032 0.968 10 C -0.593 4.593 11 H 0.053 0.947 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 1.071 2.929 15 H -0.288 1.288 16 H -0.284 1.284 17 H -0.288 1.288 18 C 0.115 3.885 19 C -0.088 4.088 20 C -0.136 4.136 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.119 4.119 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.271 0.729 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 -13.559 7.122 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C 0.324 3.676 4 O -0.429 6.429 5 N -0.342 5.342 6 C -0.036 4.036 7 C -0.166 4.166 8 C 0.011 3.989 9 H 0.050 0.950 10 C -0.632 4.632 11 H 0.071 0.929 12 C -0.181 4.181 13 N -0.545 5.545 14 Si 0.899 3.101 15 H -0.214 1.214 16 H -0.210 1.210 17 H -0.214 1.214 18 C -0.006 4.006 19 C -0.126 4.126 20 C -0.173 4.173 21 C -0.153 4.153 22 C -0.161 4.161 23 C -0.156 4.156 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.457 -12.240 6.484 13.927 hybrid contribution 0.098 -1.231 1.127 1.671 sum -1.358 -13.470 7.611 15.531 Atomic orbital electron populations 1.22048 0.93103 1.02353 1.03237 1.20759 0.96561 0.92651 0.97853 1.20078 0.80104 0.86599 0.80787 1.90564 1.37579 1.77680 1.37050 1.48670 1.53136 1.11130 1.21225 1.22608 0.94615 0.99475 0.86871 1.22894 1.01903 0.93624 0.98206 1.19978 0.93646 0.96071 0.89199 0.95017 1.21822 1.54054 0.92312 0.94993 0.92875 1.25797 0.93818 1.06387 0.92134 1.70785 1.44488 1.06991 1.32265 0.83509 0.76649 0.74225 0.75723 1.21430 1.20986 1.21421 1.22426 0.99673 0.78459 1.00070 1.21329 0.96346 0.98934 0.96000 1.21828 0.95312 1.03394 0.96748 1.21515 0.99963 0.98790 0.95056 1.21561 0.95283 1.01304 0.97905 1.21865 0.96186 1.00547 0.97021 0.90955 0.91765 0.92337 0.91738 0.91874 0.91443 0.91207 0.91771 0.92011 0.92255 0.91706 0.91948 0.92717 0.88716 0.92545 0.92394 0.91908 0.91860 0.91168 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.16 37.16 0.30 -1.48 16 2 C -0.08 -1.03 0.50 -155.66 -0.08 -1.10 16 3 C 0.54 9.61 5.07 -10.99 -0.06 9.55 16 4 O -0.55 -11.46 13.83 5.56 0.08 -11.38 16 5 N -0.61 -11.44 3.31 -170.52 -0.56 -12.01 16 6 C 0.09 1.46 5.34 -3.06 -0.02 1.45 16 7 C -0.13 -2.65 5.82 -24.89 -0.14 -2.79 16 8 C 0.03 0.72 2.49 -89.62 -0.22 0.50 16 9 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 10 C -0.59 -15.88 8.49 -34.44 -0.29 -16.17 16 11 H 0.05 1.43 7.77 -52.49 -0.41 1.02 16 12 C 0.02 0.64 5.37 -17.82 -0.10 0.54 16 13 N -0.91 -25.95 13.51 55.43 0.75 -25.20 16 14 Si 1.07 24.32 29.90 -169.99 -5.08 19.24 16 15 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.12 2.50 6.37 -2.53 -0.02 2.49 16 19 C -0.09 -1.13 4.36 -26.73 -0.12 -1.25 16 20 C -0.14 -1.82 5.63 -26.73 -0.15 -1.97 16 21 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 22 C -0.12 -1.60 5.70 -26.71 -0.15 -1.76 16 23 C -0.12 -1.47 4.55 -26.71 -0.12 -1.59 16 24 H 0.07 0.85 4.83 -51.93 -0.25 0.60 16 25 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.06 1.00 5.47 -51.93 -0.28 0.72 16 28 H 0.06 0.93 5.38 -51.93 -0.28 0.65 16 29 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 30 H 0.07 1.48 6.86 -51.93 -0.36 1.13 16 31 H 0.27 7.57 5.69 -40.82 -0.23 7.34 16 32 H 0.06 1.40 7.99 -51.93 -0.42 0.98 16 33 H 0.06 1.32 8.01 -51.93 -0.42 0.90 16 34 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.58 5.45 -51.93 -0.28 1.30 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.01 7.22 -51.93 -0.37 0.63 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.01 4.43 -51.93 -0.23 0.78 16 LS Contribution 313.87 15.07 4.73 4.73 Total: -1.00 -29.32 313.87 -8.36 -37.68 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.95 Total: 2.06 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.32 Total: -15.12 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.18 Total: -37.21 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.32 -8.36 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397695345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.814 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds