Wall clock time and date at job start Mon Mar 30 2020 08:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47382 * 2 1 4 4 O 1.21280 * 120.00076 * 121.69806 * 3 2 1 5 5 N 1.34777 * 119.99905 * 301.69912 * 3 2 1 6 6 C 1.47024 * 125.64726 * 355.39239 * 5 3 2 7 7 C 1.54330 * 107.26683 * 181.02626 * 6 5 3 8 8 C 1.55158 * 102.94449 * 22.18957 * 7 6 5 9 9 H 1.08994 * 111.03498 * 82.58776 * 8 7 6 10 10 C 1.50694 * 111.00038 * 206.42399 * 8 7 6 11 11 H 1.07997 * 120.00111 * 112.19897 * 10 8 7 12 12 C 1.37879 * 120.00144 * 292.19453 * 10 8 7 13 13 N 1.31512 * 119.99762 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00034 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46992 * 270.00314 * 14 12 10 16 16 H 1.48493 * 109.47239 * 150.00236 * 14 12 10 17 17 H 1.48500 * 109.47022 * 29.99944 * 14 12 10 18 18 C 1.47425 * 125.64515 * 175.34962 * 5 3 2 19 19 C 1.53001 * 109.47105 * 119.99914 * 2 1 3 20 20 C 1.52998 * 109.47471 * 180.02562 * 19 2 1 21 21 C 1.53003 * 109.46943 * 300.00170 * 20 19 2 22 22 C 1.53001 * 109.47176 * 59.99649 * 21 20 19 23 23 C 1.52997 * 109.47263 * 239.99719 * 2 1 3 24 24 H 1.08999 * 109.46889 * 69.65184 * 1 2 3 25 25 H 1.08991 * 109.47322 * 189.65373 * 1 2 3 26 26 H 1.09004 * 109.46873 * 309.65612 * 1 2 3 27 27 H 1.08998 * 109.88025 * 300.44101 * 6 5 3 28 28 H 1.08991 * 109.88338 * 61.45331 * 6 5 3 29 29 H 1.08997 * 110.71316 * 263.82538 * 7 6 5 30 30 H 1.08999 * 110.71612 * 140.55971 * 7 6 5 31 31 H 0.96998 * 120.00521 * 359.97438 * 13 12 10 32 32 H 1.08996 * 110.37230 * 37.07199 * 18 5 3 33 33 H 1.08995 * 110.36636 * 274.74207 * 18 5 3 34 34 H 1.09005 * 109.47195 * 300.00594 * 19 2 1 35 35 H 1.09002 * 109.46932 * 59.99776 * 19 2 1 36 36 H 1.08998 * 109.46944 * 180.02562 * 20 19 2 37 37 H 1.09000 * 109.46778 * 59.99915 * 20 19 2 38 38 H 1.09002 * 109.46917 * 299.99974 * 21 20 19 39 39 H 1.08995 * 109.46944 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.47100 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.46932 * 60.00334 * 22 21 20 42 42 H 1.09002 * 109.47123 * 300.00437 * 23 2 1 43 43 H 1.09002 * 109.46717 * 60.00240 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.7549 1.8085 0.8936 5 7 1.6788 2.2606 -0.9931 6 6 0.8922 1.8992 -2.1815 7 6 0.7590 3.1703 -3.0466 8 6 1.9565 4.0377 -2.5764 9 1 2.8760 3.7417 -3.0811 10 6 1.6766 5.5036 -2.7859 11 1 1.5482 6.1558 -1.9347 12 6 1.5846 6.0121 -4.0641 13 7 1.7406 5.2178 -5.1006 14 14 1.2384 7.8293 -4.3237 15 1 -0.2285 8.0481 -4.3980 16 1 1.8705 8.2777 -5.5904 17 1 1.7979 8.6069 -3.1890 18 6 2.0160 3.6938 -1.0671 19 6 2.0400 -0.7212 1.2493 20 6 3.5700 -0.7207 1.2497 21 6 4.0805 -1.4416 0.0004 22 6 3.5705 -0.7204 -1.2489 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.3573 -0.9635 25 1 -0.3633 -1.0130 0.1723 26 1 -0.3633 0.6559 0.7912 27 1 1.4070 1.1202 -2.7439 28 1 -0.0946 1.5480 -1.8801 29 1 -0.1856 3.6758 -2.8462 30 1 0.8507 2.9275 -4.1052 31 1 1.9208 4.2743 -4.9659 32 1 3.0190 3.8683 -0.6777 33 1 1.2855 4.2844 -0.5144 34 1 1.6766 -0.2074 2.1393 35 1 1.6766 -1.7489 1.2493 36 1 3.9332 -1.2349 2.1394 37 1 3.9329 0.3071 1.2499 38 1 3.7175 -2.4694 0.0002 39 1 5.1705 -1.4409 0.0005 40 1 3.9338 -1.2342 -2.1388 41 1 3.9335 0.3074 -1.2486 42 1 1.6766 -1.7490 -1.2492 43 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397695345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:58 Heat of formation + Delta-G solvation = -72.711324 kcal Electronic energy + Delta-G solvation = -21716.947035 eV Core-core repulsion = 18760.234929 eV Total energy + Delta-G solvation = -2956.712106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.00321 -39.25424 -37.87903 -35.41410 -33.92163 -32.06585 -31.36723 -30.13834 -27.44150 -26.65533 -25.06680 -23.63985 -22.50308 -21.95750 -21.46842 -19.87479 -18.86513 -17.54078 -17.22460 -16.59799 -15.95224 -15.71012 -15.64454 -15.12799 -15.06489 -14.79431 -14.22656 -14.07448 -13.99214 -13.77674 -13.42030 -13.14131 -13.11425 -12.87951 -12.75336 -12.74150 -12.41640 -12.31466 -11.96502 -11.94780 -11.73963 -11.57190 -11.48078 -11.05391 -10.92606 -10.65553 -10.48363 -10.41983 -9.56910 -8.61720 -6.34761 1.55231 1.62719 1.63128 1.80750 2.04672 2.57299 3.17594 3.39445 3.61498 3.76720 3.87712 3.90103 4.04510 4.16772 4.23186 4.26423 4.31654 4.41072 4.42928 4.50340 4.60357 4.63054 4.73159 4.79805 4.85685 4.86982 4.90898 5.01042 5.05046 5.13527 5.18022 5.19870 5.26845 5.30399 5.34090 5.37797 5.42525 5.52794 5.61865 6.03646 6.17835 6.58792 6.66863 7.17503 7.43782 8.78430 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.004909 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.497919 B = 5702.742540 C = 5737.160298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 C 0.528 3.472 4 O -0.586 6.586 5 N -0.614 5.614 6 C 0.096 3.904 7 C -0.118 4.118 8 C 0.023 3.977 9 H 0.003 0.997 10 C -0.609 4.609 11 H 0.044 0.956 12 C -0.020 4.020 13 N -0.931 5.931 14 Si 1.114 2.886 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.278 1.278 18 C 0.126 3.874 19 C -0.087 4.087 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.116 4.116 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.020 0.980 42 H 0.107 0.893 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -16.035 7.212 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C 0.320 3.680 4 O -0.467 6.467 5 N -0.346 5.346 6 C -0.025 4.025 7 C -0.156 4.156 8 C 0.004 3.996 9 H 0.022 0.978 10 C -0.647 4.647 11 H 0.062 0.938 12 C -0.220 4.220 13 N -0.568 5.568 14 Si 0.937 3.063 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.203 1.203 18 C 0.003 3.997 19 C -0.125 4.125 20 C -0.175 4.175 21 C -0.148 4.148 22 C -0.163 4.163 23 C -0.153 4.153 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.125 0.875 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.039 -14.745 6.584 16.432 hybrid contribution 0.682 -0.458 1.162 1.424 sum -2.357 -15.203 7.746 17.225 Atomic orbital electron populations 1.22064 0.91115 1.04310 1.02964 1.20857 0.97998 0.89125 0.99268 1.21119 0.79129 0.88228 0.79573 1.90560 1.39049 1.78712 1.38375 1.48730 1.53689 1.09783 1.22377 1.22662 0.96402 0.97773 0.85662 1.22669 0.99656 0.94802 0.98522 1.19880 0.93765 0.95504 0.90447 0.97841 1.22131 1.53838 0.93867 0.94902 0.93777 1.27085 0.93152 1.09757 0.92005 1.70880 1.46157 1.06931 1.32800 0.82943 0.77495 0.70019 0.75869 1.19661 1.20933 1.20320 1.22048 0.98315 0.80963 0.98411 1.21380 0.95631 1.00581 0.94882 1.21784 0.96150 1.01261 0.98331 1.21499 1.00008 0.99824 0.93500 1.21585 0.96243 0.99159 0.99330 1.21902 0.95278 1.02304 0.95781 0.90707 0.88327 0.93457 0.89654 0.88548 0.92302 0.91922 0.92571 0.94126 0.92999 0.93073 0.88278 0.91342 0.92951 0.89567 0.92531 0.90282 0.96065 0.87458 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.16 71.98 0.59 -2.33 16 2 C -0.07 -1.72 0.50 -52.93 -0.03 -1.75 16 3 C 0.53 18.94 5.07 87.66 0.44 19.39 16 4 O -0.59 -25.37 13.83 -3.03 -0.04 -25.41 16 5 N -0.61 -23.20 3.31 -811.79 -2.69 -25.88 16 6 C 0.10 3.12 5.34 86.73 0.46 3.59 16 7 C -0.12 -4.93 5.82 31.79 0.19 -4.74 16 8 C 0.02 1.15 2.49 -10.15 -0.03 1.13 16 9 H 0.00 0.19 7.89 -2.39 -0.02 0.17 16 10 C -0.61 -33.60 8.49 25.60 0.22 -33.39 16 11 H 0.04 2.45 7.77 -2.91 -0.02 2.43 16 12 C -0.02 -1.13 5.37 84.66 0.45 -0.67 16 13 N -0.93 -54.04 13.51 21.45 0.29 -53.75 16 14 Si 1.11 49.14 29.90 68.60 2.05 51.19 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 18 C 0.13 5.71 6.37 86.86 0.55 6.26 16 19 C -0.09 -1.99 4.36 30.59 0.13 -1.86 16 20 C -0.14 -3.51 5.63 30.59 0.17 -3.34 16 21 C -0.11 -2.38 5.92 30.60 0.18 -2.19 16 22 C -0.13 -3.04 5.70 30.61 0.17 -2.86 16 23 C -0.12 -2.43 4.55 30.61 0.14 -2.29 16 24 H 0.07 1.43 4.83 -2.39 -0.01 1.42 16 25 H 0.10 1.33 8.12 -2.39 -0.02 1.31 16 26 H 0.05 1.05 8.11 -2.39 -0.02 1.03 16 27 H 0.09 2.46 5.47 -2.39 -0.01 2.45 16 28 H 0.10 2.55 5.38 -2.39 -0.01 2.53 16 29 H 0.06 2.53 8.03 -2.39 -0.02 2.51 16 30 H 0.06 2.69 6.86 -2.39 -0.02 2.68 16 31 H 0.26 15.17 5.69 -92.71 -0.53 14.64 16 32 H 0.04 1.97 7.99 -2.39 -0.02 1.95 16 33 H 0.05 2.40 8.01 -2.39 -0.02 2.38 16 34 H 0.05 1.30 8.12 -2.38 -0.02 1.29 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.80 5.45 -2.39 -0.01 1.79 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.02 0.67 7.22 -2.39 -0.02 0.66 16 42 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.66 4.43 -2.39 -0.01 1.65 16 Total: -1.00 -66.92 313.87 4.49 -62.43 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.22 Total: 16.48 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.65 Total: -25.05 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.40 Total: -79.63 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.04 Total: -25.41 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.19 kcal Total: -66.92 4.49 -62.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397695345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.284 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds