Wall clock time and date at job start Mon Mar 30 2020 08:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46792 * 2 1 4 4 O 1.21277 * 120.00062 * 240.52685 * 3 2 1 5 5 N 1.34773 * 119.99881 * 60.53768 * 3 2 1 6 6 C 1.47023 * 125.65086 * 354.60554 * 5 3 2 7 7 C 1.54324 * 107.40412 * 178.82929 * 6 5 3 8 8 C 1.55402 * 102.82876 * 337.98391 * 7 6 5 9 9 H 1.09003 * 110.92244 * 277.24559 * 8 7 6 10 10 C 1.50701 * 111.03661 * 153.47293 * 8 7 6 11 11 H 1.08006 * 119.99431 * 247.67184 * 10 8 7 12 12 C 1.37877 * 120.00364 * 67.68145 * 10 8 7 13 13 N 1.31511 * 119.99684 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99977 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47293 * 59.99424 * 14 12 10 16 16 H 1.48493 * 109.46903 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46641 * 299.99469 * 14 12 10 18 18 C 1.47433 * 125.64943 * 174.57206 * 5 3 2 19 19 C 1.52995 * 109.47074 * 120.00175 * 2 1 3 20 20 C 1.53002 * 109.47074 * 180.02562 * 19 2 1 21 21 C 1.52994 * 109.47220 * 300.00096 * 20 19 2 22 22 C 1.53000 * 109.47112 * 59.99624 * 21 20 19 23 23 C 1.52999 * 109.47610 * 299.99985 * 22 21 20 24 24 H 1.09009 * 109.47102 * 63.91949 * 1 2 3 25 25 H 1.08996 * 109.47219 * 183.91726 * 1 2 3 26 26 H 1.08997 * 109.47244 * 303.92370 * 1 2 3 27 27 H 1.08993 * 109.88574 * 298.32955 * 6 5 3 28 28 H 1.09007 * 109.87690 * 59.33937 * 6 5 3 29 29 H 1.09002 * 110.71513 * 96.25315 * 7 6 5 30 30 H 1.09003 * 110.72413 * 219.52454 * 7 6 5 31 31 H 0.97000 * 119.99653 * 180.02562 * 13 12 10 32 32 H 1.08996 * 110.36346 * 322.99923 * 18 5 3 33 33 H 1.08998 * 110.36279 * 85.20912 * 18 5 3 34 34 H 1.09005 * 109.46987 * 300.00127 * 19 2 1 35 35 H 1.08999 * 109.47385 * 59.99911 * 19 2 1 36 36 H 1.08997 * 109.46978 * 179.97438 * 20 19 2 37 37 H 1.09001 * 109.46867 * 60.00222 * 20 19 2 38 38 H 1.09006 * 109.47216 * 300.00343 * 21 20 19 39 39 H 1.08998 * 109.47180 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47371 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47137 * 60.00403 * 22 21 20 42 42 H 1.08999 * 109.47211 * 300.00372 * 23 22 21 43 43 H 1.09000 * 109.47357 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.7216 1.8204 -0.9144 5 7 1.7156 2.2475 1.0162 6 6 0.8030 1.9320 2.1249 7 6 0.7693 3.1601 3.0588 8 6 2.1005 3.8872 2.7208 9 1 2.9345 3.4461 3.2668 10 6 1.9964 5.3643 3.0008 11 1 2.0164 6.0713 2.1846 12 6 1.8757 5.8131 4.2989 13 7 1.8509 4.9522 5.2927 14 14 1.7458 7.6441 4.6458 15 1 0.5469 8.1934 3.9632 16 1 1.6254 7.8632 6.1095 17 1 2.9615 8.3310 4.1403 18 6 2.2275 3.6178 1.2007 19 6 2.0400 -0.7213 1.2492 20 6 3.5700 -0.7207 1.2495 21 6 4.0805 -1.4415 0.0003 22 6 3.5705 -0.7202 -1.2489 23 6 2.0405 -0.7208 -1.2493 24 1 -0.3634 0.4518 -0.9231 25 1 -0.3633 -1.0252 0.0702 26 1 -0.3633 0.5735 0.8527 27 1 -0.1962 1.7334 1.7375 28 1 1.1689 1.0618 2.6699 29 1 -0.0858 3.7958 2.8292 30 1 0.7511 2.8498 4.1036 31 1 1.7656 5.2679 6.2059 32 1 3.2707 3.6779 0.8906 33 1 1.6231 4.3276 0.6361 34 1 1.6766 -0.2074 2.1392 35 1 1.6767 -1.7489 1.2492 36 1 3.9333 -1.2342 2.1397 37 1 3.9329 0.3071 1.2498 38 1 3.7175 -2.4693 0.0000 39 1 5.1705 -1.4407 0.0003 40 1 3.9346 -1.2335 -2.1390 41 1 3.9334 0.3075 -1.2487 42 1 1.6775 -1.7486 -1.2495 43 1 1.6772 -0.2066 -2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397695347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:03 Heat of formation + Delta-G solvation = -52.229064 kcal Electronic energy + Delta-G solvation = -21682.391974 eV Core-core repulsion = 18726.568045 eV Total energy + Delta-G solvation = -2955.823929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60741 -37.59925 -36.32328 -33.39886 -32.54069 -30.80621 -29.92548 -28.40584 -26.44112 -25.15065 -23.31731 -22.50754 -21.08048 -20.47282 -19.65628 -18.32788 -16.57251 -16.05256 -15.57169 -15.13826 -14.66377 -14.49638 -14.08889 -13.97380 -13.52242 -13.33981 -12.84073 -12.61590 -12.33253 -12.18185 -12.03966 -11.81768 -11.55610 -11.52207 -11.27296 -11.07566 -11.01961 -10.90015 -10.71508 -10.52720 -10.38022 -10.00227 -9.81514 -9.72192 -9.45743 -9.00642 -8.94723 -8.47409 -7.90992 -6.12002 -4.15271 3.11833 3.28334 3.33006 3.35776 3.62043 4.37870 4.63353 4.73337 4.84295 5.09798 5.19938 5.27067 5.31301 5.41714 5.52336 5.56162 5.61113 5.64616 5.70198 5.73300 5.89477 5.91651 5.95720 6.04200 6.16791 6.18651 6.24725 6.35621 6.36413 6.38707 6.41497 6.53324 6.62594 6.73094 6.84482 6.99385 7.11821 7.42489 7.69126 7.87675 8.19849 8.28776 8.71349 8.86831 9.49754 10.98141 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034236 B = 0.004939 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.659679 B = 5668.169966 C = 5690.326605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C 0.535 3.465 4 O -0.552 6.552 5 N -0.608 5.608 6 C 0.083 3.917 7 C -0.114 4.114 8 C 0.047 3.953 9 H 0.041 0.959 10 C -0.516 4.516 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.108 3.892 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.134 4.134 23 C -0.088 4.088 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 -12.924 -6.760 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.078 4.078 3 C 0.324 3.676 4 O -0.432 6.432 5 N -0.340 5.340 6 C -0.039 4.039 7 C -0.153 4.153 8 C 0.028 3.972 9 H 0.059 0.941 10 C -0.554 4.554 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.526 5.526 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.013 4.013 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.171 4.171 23 C -0.126 4.126 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.604 -12.767 -7.096 14.694 hybrid contribution -0.187 0.950 0.353 1.030 sum -1.790 -11.817 -6.743 13.723 Atomic orbital electron populations 1.22157 0.93219 1.02663 1.03381 1.20750 0.96578 0.92716 0.97749 1.20056 0.80110 0.86552 0.80920 1.90565 1.40000 1.77106 1.35497 1.48683 1.45593 1.15966 1.23771 1.22701 0.92216 1.00395 0.88563 1.22715 1.01099 0.93477 0.97982 1.19855 0.93550 0.96040 0.87724 0.94053 1.20921 1.51174 0.90865 0.92435 0.92323 1.24944 0.94754 0.97735 0.96179 1.69932 1.49618 1.33842 0.99245 0.86627 0.78767 0.85391 0.77068 1.20197 1.21277 1.20173 1.22568 0.97943 0.80506 1.00300 1.21824 0.96152 1.00349 0.97061 1.21546 0.95326 1.01354 0.97788 1.21520 0.99932 0.98789 0.95115 1.21799 0.95364 1.03240 0.96744 1.21323 0.96277 0.98950 0.96066 0.92390 0.91844 0.90502 0.92151 0.91743 0.92185 0.90295 0.92820 0.92284 0.92499 0.90151 0.91308 0.91911 0.91770 0.92587 0.92429 0.92768 0.88916 0.92022 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.33 37.16 0.31 -1.58 16 2 C -0.07 -1.04 0.50 -155.66 -0.08 -1.12 16 3 C 0.54 9.69 5.05 -10.99 -0.06 9.64 16 4 O -0.55 -11.60 13.97 5.56 0.08 -11.52 16 5 N -0.61 -11.50 3.31 -170.52 -0.56 -12.07 16 6 C 0.08 1.43 5.37 -3.06 -0.02 1.41 16 7 C -0.11 -2.40 5.92 -24.76 -0.15 -2.55 16 8 C 0.05 1.13 2.85 -89.49 -0.25 0.87 16 9 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 10 C -0.52 -13.55 8.50 -34.44 -0.29 -13.85 16 11 H 0.06 1.53 7.77 -52.48 -0.41 1.13 16 12 C 0.07 1.76 5.37 -17.82 -0.10 1.66 16 13 N -0.89 -24.30 12.62 55.43 0.70 -23.60 16 14 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.11 2.34 6.33 -2.53 -0.02 2.32 16 19 C -0.12 -1.48 4.58 -26.73 -0.12 -1.61 16 20 C -0.12 -1.64 5.70 -26.73 -0.15 -1.80 16 21 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 22 C -0.13 -1.83 5.63 -26.73 -0.15 -1.98 16 23 C -0.09 -1.15 4.37 -26.73 -0.12 -1.27 16 24 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.95 4.23 -51.93 -0.22 0.73 16 27 H 0.06 0.91 5.56 -51.93 -0.29 0.62 16 28 H 0.06 1.01 5.14 -51.92 -0.27 0.75 16 29 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 30 H 0.08 1.75 7.86 -51.93 -0.41 1.34 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 33 H 0.06 1.25 8.02 -51.93 -0.42 0.84 16 34 H 0.08 1.07 4.58 -51.93 -0.24 0.83 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.05 7.22 -51.93 -0.37 0.67 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.56 5.53 -51.93 -0.29 1.28 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -28.14 316.89 -8.48 -36.62 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.10 Total: 1.62 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.35 Total: -11.42 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.14 Total: -35.67 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.14 -8.48 -36.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397695347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.608 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds