Wall clock time and date at job start Mon Mar 30 2020 08:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46792 * 2 1 4 4 O 1.21277 * 120.00062 * 240.52685 * 3 2 1 5 5 N 1.34773 * 119.99881 * 60.53768 * 3 2 1 6 6 C 1.47023 * 125.65086 * 354.60554 * 5 3 2 7 7 C 1.54324 * 107.40412 * 178.82929 * 6 5 3 8 8 C 1.55402 * 102.82876 * 337.98391 * 7 6 5 9 9 H 1.09003 * 110.92244 * 277.24559 * 8 7 6 10 10 C 1.50701 * 111.03661 * 153.47293 * 8 7 6 11 11 H 1.08006 * 119.99431 * 247.67184 * 10 8 7 12 12 C 1.37877 * 120.00364 * 67.68145 * 10 8 7 13 13 N 1.31511 * 119.99684 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99977 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47293 * 59.99424 * 14 12 10 16 16 H 1.48493 * 109.46903 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46641 * 299.99469 * 14 12 10 18 18 C 1.47433 * 125.64943 * 174.57206 * 5 3 2 19 19 C 1.52995 * 109.47074 * 120.00175 * 2 1 3 20 20 C 1.53002 * 109.47074 * 180.02562 * 19 2 1 21 21 C 1.52994 * 109.47220 * 300.00096 * 20 19 2 22 22 C 1.53000 * 109.47112 * 59.99624 * 21 20 19 23 23 C 1.52999 * 109.47610 * 299.99985 * 22 21 20 24 24 H 1.09009 * 109.47102 * 63.91949 * 1 2 3 25 25 H 1.08996 * 109.47219 * 183.91726 * 1 2 3 26 26 H 1.08997 * 109.47244 * 303.92370 * 1 2 3 27 27 H 1.08993 * 109.88574 * 298.32955 * 6 5 3 28 28 H 1.09007 * 109.87690 * 59.33937 * 6 5 3 29 29 H 1.09002 * 110.71513 * 96.25315 * 7 6 5 30 30 H 1.09003 * 110.72413 * 219.52454 * 7 6 5 31 31 H 0.97000 * 119.99653 * 180.02562 * 13 12 10 32 32 H 1.08996 * 110.36346 * 322.99923 * 18 5 3 33 33 H 1.08998 * 110.36279 * 85.20912 * 18 5 3 34 34 H 1.09005 * 109.46987 * 300.00127 * 19 2 1 35 35 H 1.08999 * 109.47385 * 59.99911 * 19 2 1 36 36 H 1.08997 * 109.46978 * 179.97438 * 20 19 2 37 37 H 1.09001 * 109.46867 * 60.00222 * 20 19 2 38 38 H 1.09006 * 109.47216 * 300.00343 * 21 20 19 39 39 H 1.08998 * 109.47180 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47371 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47137 * 60.00403 * 22 21 20 42 42 H 1.08999 * 109.47211 * 300.00372 * 23 22 21 43 43 H 1.09000 * 109.47357 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.7216 1.8204 -0.9144 5 7 1.7156 2.2475 1.0162 6 6 0.8030 1.9320 2.1249 7 6 0.7693 3.1601 3.0588 8 6 2.1005 3.8872 2.7208 9 1 2.9345 3.4461 3.2668 10 6 1.9964 5.3643 3.0008 11 1 2.0164 6.0713 2.1846 12 6 1.8757 5.8131 4.2989 13 7 1.8509 4.9522 5.2927 14 14 1.7458 7.6441 4.6458 15 1 0.5469 8.1934 3.9632 16 1 1.6254 7.8632 6.1095 17 1 2.9615 8.3310 4.1403 18 6 2.2275 3.6178 1.2007 19 6 2.0400 -0.7213 1.2492 20 6 3.5700 -0.7207 1.2495 21 6 4.0805 -1.4415 0.0003 22 6 3.5705 -0.7202 -1.2489 23 6 2.0405 -0.7208 -1.2493 24 1 -0.3634 0.4518 -0.9231 25 1 -0.3633 -1.0252 0.0702 26 1 -0.3633 0.5735 0.8527 27 1 -0.1962 1.7334 1.7375 28 1 1.1689 1.0618 2.6699 29 1 -0.0858 3.7958 2.8292 30 1 0.7511 2.8498 4.1036 31 1 1.7656 5.2679 6.2059 32 1 3.2707 3.6779 0.8906 33 1 1.6231 4.3276 0.6361 34 1 1.6766 -0.2074 2.1392 35 1 1.6767 -1.7489 1.2492 36 1 3.9333 -1.2342 2.1397 37 1 3.9329 0.3071 1.2498 38 1 3.7175 -2.4693 0.0000 39 1 5.1705 -1.4407 0.0003 40 1 3.9346 -1.2335 -2.1390 41 1 3.9334 0.3075 -1.2487 42 1 1.6775 -1.7486 -1.2495 43 1 1.6772 -0.2066 -2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397695347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:02 Heat of formation + Delta-G solvation = -67.333603 kcal Electronic energy + Delta-G solvation = -21683.046956 eV Core-core repulsion = 18726.568045 eV Total energy + Delta-G solvation = -2956.478911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91719 -39.05764 -37.78287 -35.11004 -33.88611 -32.13202 -31.36221 -30.07206 -27.39936 -27.01612 -24.83791 -23.58973 -22.38290 -21.78634 -21.32127 -19.74860 -18.48674 -17.45649 -16.94199 -16.60571 -16.42187 -15.81032 -15.38794 -15.09774 -14.72878 -14.71298 -14.36724 -14.06688 -13.85076 -13.43893 -13.29240 -13.12624 -12.93623 -12.86284 -12.80747 -12.67611 -12.45141 -12.41657 -12.21579 -11.93415 -11.57923 -11.41255 -11.31678 -11.05897 -10.99252 -10.78381 -10.49323 -10.36705 -9.46482 -8.16891 -6.26413 1.43713 1.44243 1.51940 1.71041 2.14930 2.44228 3.15121 3.47420 3.67076 3.82296 3.98473 4.05024 4.13232 4.27889 4.33057 4.34058 4.46512 4.49172 4.53309 4.55941 4.64902 4.78091 4.79692 4.87191 4.93829 4.95175 5.02789 5.10108 5.13539 5.22072 5.27250 5.30450 5.38228 5.40160 5.43245 5.49784 5.55628 5.65284 5.74816 5.85815 6.27049 6.73681 6.79699 7.25768 7.41388 8.92667 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034236 B = 0.004939 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.659679 B = 5668.169966 C = 5690.326605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C 0.528 3.472 4 O -0.588 6.588 5 N -0.613 5.613 6 C 0.093 3.907 7 C -0.105 4.105 8 C 0.043 3.957 9 H 0.010 0.990 10 C -0.537 4.537 11 H 0.052 0.948 12 C 0.023 3.977 13 N -0.913 5.913 14 Si 0.954 3.046 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.276 1.276 18 C 0.119 3.881 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.136 4.136 23 C -0.087 4.087 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.021 0.979 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -15.196 -6.894 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.073 4.073 3 C 0.319 3.681 4 O -0.469 6.469 5 N -0.345 5.345 6 C -0.028 4.028 7 C -0.144 4.144 8 C 0.024 3.976 9 H 0.028 0.972 10 C -0.575 4.575 11 H 0.070 0.930 12 C -0.177 4.177 13 N -0.551 5.551 14 Si 0.780 3.220 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.201 1.201 18 C -0.004 4.004 19 C -0.150 4.150 20 C -0.163 4.163 21 C -0.148 4.148 22 C -0.174 4.174 23 C -0.124 4.124 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.110 -15.052 -7.234 16.987 hybrid contribution 0.365 1.667 0.357 1.743 sum -2.745 -13.385 -6.877 15.297 Atomic orbital electron populations 1.22163 0.91162 1.04795 1.02964 1.20845 0.98090 0.89263 0.99068 1.21060 0.79184 0.88126 0.79727 1.90558 1.41432 1.78111 1.36835 1.48742 1.46035 1.14907 1.24773 1.22726 0.93631 0.98963 0.87470 1.22490 0.98881 0.94759 0.98223 1.19730 0.94024 0.95180 0.88695 0.97171 1.21224 1.51446 0.92166 0.92658 0.92959 1.25640 0.94404 1.01730 0.95943 1.70030 1.50134 1.35467 0.99468 0.85675 0.78776 0.80548 0.77044 1.19511 1.20679 1.20095 1.22196 0.96914 0.82546 0.98718 1.21855 0.95253 1.02089 0.95836 1.21568 0.96292 0.99206 0.99225 1.21501 1.00001 0.99804 0.93519 1.21758 0.96183 1.01134 0.98295 1.21367 0.95572 1.00566 0.94944 0.92870 0.88393 0.90830 0.89002 0.89663 0.92983 0.91621 0.92718 0.94146 0.93256 0.90742 0.87611 0.90457 0.95983 0.89622 0.92520 0.91322 0.93105 0.88422 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.33 71.98 0.60 -2.51 16 2 C -0.07 -1.77 0.50 -52.93 -0.03 -1.79 16 3 C 0.53 19.13 5.05 87.66 0.44 19.57 16 4 O -0.59 -25.57 13.97 -3.02 -0.04 -25.61 16 5 N -0.61 -23.37 3.31 -811.80 -2.69 -26.06 16 6 C 0.09 3.09 5.37 86.73 0.47 3.55 16 7 C -0.10 -4.47 5.92 31.87 0.19 -4.28 16 8 C 0.04 2.13 2.85 -10.06 -0.03 2.10 16 9 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 10 C -0.54 -29.12 8.50 25.60 0.22 -28.90 16 11 H 0.05 2.83 7.77 -2.91 -0.02 2.80 16 12 C 0.02 1.23 5.37 84.66 0.45 1.69 16 13 N -0.91 -50.72 12.62 21.45 0.27 -50.45 16 14 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 18 C 0.12 5.39 6.33 86.85 0.55 5.94 16 19 C -0.11 -2.50 4.58 30.59 0.14 -2.36 16 20 C -0.13 -3.16 5.70 30.59 0.17 -2.99 16 21 C -0.11 -2.45 5.92 30.59 0.18 -2.26 16 22 C -0.14 -3.53 5.63 30.59 0.17 -3.36 16 23 C -0.09 -2.03 4.37 30.60 0.13 -1.90 16 24 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.53 4.23 -2.39 -0.01 1.52 16 27 H 0.09 2.53 5.56 -2.39 -0.01 2.51 16 28 H 0.09 2.51 5.14 -2.38 -0.01 2.50 16 29 H 0.05 2.26 8.03 -2.39 -0.02 2.24 16 30 H 0.07 2.95 7.86 -2.39 -0.02 2.93 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.04 1.93 8.09 -2.39 -0.02 1.91 16 33 H 0.05 2.27 8.02 -2.39 -0.02 2.26 16 34 H 0.07 1.74 4.58 -2.38 -0.01 1.73 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.02 0.72 7.22 -2.39 -0.02 0.71 16 38 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.05 1.76 5.53 -2.39 -0.01 1.75 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -63.80 316.89 4.21 -59.59 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.98 Total: 15.36 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 3.67 Total: -17.50 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -2.42 Total: -76.51 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -63.80 4.21 -59.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397695347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.742 kcal (2) G-P(sol) polarization free energy of solvation -63.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds