Wall clock time and date at job start Mon Mar 30 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48495 * 109.47281 * 239.99914 * 3 2 1 5 5 H 1.48496 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47181 * 120.00235 * 3 2 1 7 7 C 1.37878 * 120.00648 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99440 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.88471 * 303.87929 * 9 7 2 11 11 C 1.55154 * 111.00686 * 67.80199 * 9 7 2 12 12 C 1.54325 * 102.94303 * 153.57472 * 11 9 7 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.34774 * 125.79121 * 178.92556 * 13 12 11 15 15 O 1.21284 * 119.99787 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00339 * 359.97438 * 14 13 12 17 17 C 1.52994 * 109.47372 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47371 * 180.02562 * 17 16 14 19 19 C 1.54271 * 110.02836 * 292.91037 * 18 17 16 20 20 C 1.54964 * 104.15811 * 217.13718 * 19 18 17 21 21 C 1.54887 * 102.77994 * 37.88714 * 20 19 18 22 22 C 1.53878 * 110.03248 * 175.69634 * 18 17 16 23 23 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 24 24 H 0.97002 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.72290 * 271.94159 * 11 9 7 26 26 H 1.08994 * 110.71922 * 35.03627 * 11 9 7 27 27 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 28 28 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 29 29 H 1.09001 * 109.47139 * 300.00399 * 16 14 13 30 30 H 1.09007 * 109.46778 * 60.00102 * 16 14 13 31 31 H 1.09004 * 109.47534 * 300.00736 * 17 16 14 32 32 H 1.09007 * 109.47102 * 60.00281 * 17 16 14 33 33 H 1.08996 * 110.01501 * 54.30058 * 18 17 16 34 34 H 1.09000 * 110.48537 * 335.77859 * 19 18 17 35 35 H 1.09002 * 110.48535 * 98.42624 * 19 18 17 36 36 H 1.09013 * 110.71775 * 279.57737 * 20 19 18 37 37 H 1.08994 * 110.92652 * 156.30145 * 20 19 18 38 38 H 1.09004 * 110.49218 * 203.41148 * 21 20 19 39 39 H 1.08994 * 110.60044 * 80.81675 * 21 20 19 40 40 H 1.09001 * 110.02575 * 238.57007 * 22 18 17 41 41 H 1.08996 * 110.02893 * 359.94404 * 22 18 17 42 42 H 1.09002 * 110.36696 * 265.26054 * 23 13 12 43 43 H 1.08995 * 110.36608 * 143.04891 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5648 -2.5523 0.8435 11 6 0.4996 -2.7063 -1.3432 12 6 0.3981 -4.2426 -1.4489 13 7 1.4607 -4.8111 -0.6020 14 6 1.6955 -6.1239 -0.4071 15 8 2.6036 -6.4767 0.3153 16 6 0.8297 -7.1533 -1.0866 17 6 1.3049 -8.5551 -0.6996 18 6 0.4263 -9.6003 -1.3899 19 6 -1.0078 -9.5419 -0.8242 20 6 -1.4610 -11.0233 -0.7865 21 6 -0.1700 -11.7658 -0.3611 22 6 0.9587 -11.0137 -1.0960 23 6 2.2259 -3.7030 -0.0021 24 1 -0.4850 0.8400 0.0004 25 1 -0.4923 -2.2561 -1.3032 26 1 1.0740 -2.2970 -2.1742 27 1 -0.5769 -4.5751 -1.0927 28 1 0.5401 -4.5531 -2.4840 29 1 -0.2058 -7.0215 -0.7727 30 1 0.9000 -7.0309 -2.1674 31 1 2.3405 -8.6872 -1.0131 32 1 1.2342 -8.6773 0.3813 33 1 0.4109 -9.4232 -2.4653 34 1 -1.0046 -9.1185 0.1802 35 1 -1.6541 -8.9610 -1.4822 36 1 -1.7881 -11.3517 -1.7732 37 1 -2.2514 -11.1700 -0.0505 38 1 -0.2057 -12.8072 -0.6811 39 1 -0.0299 -11.7039 0.7181 40 1 1.2010 -11.5229 -2.0288 41 1 1.8436 -10.9550 -0.4623 42 1 3.1054 -3.4788 -0.6058 43 1 2.5201 -3.9533 1.0171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397695459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:43 Heat of formation + Delta-G solvation = -73.726021 kcal Electronic energy + Delta-G solvation = -20097.787021 eV Core-core repulsion = 17141.030914 eV Total energy + Delta-G solvation = -2956.756107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.55526 -38.42695 -36.70530 -33.18081 -32.90949 -30.43551 -28.92144 -28.52718 -27.86951 -25.04599 -23.27516 -21.90782 -20.82181 -19.77052 -19.62083 -18.54541 -16.78706 -16.38180 -15.99128 -15.49820 -15.02841 -14.74519 -14.50467 -14.31582 -13.49061 -13.28152 -12.84711 -12.66291 -12.45444 -12.36378 -11.73848 -11.58495 -11.33962 -11.27443 -11.23476 -11.14056 -11.02151 -10.88399 -10.77515 -10.73928 -10.59828 -10.48914 -10.40034 -9.82380 -9.48926 -9.24742 -9.00897 -8.48283 -7.97264 -6.11904 -4.15349 3.11176 3.28444 3.33063 3.35774 3.60705 4.37766 4.43303 4.48439 4.57967 4.95262 5.07207 5.15041 5.21848 5.29316 5.38921 5.46377 5.50137 5.56022 5.59637 5.64985 5.71264 5.73208 5.79721 5.85068 5.94148 6.01581 6.03803 6.13416 6.16547 6.27557 6.27974 6.38423 6.41699 6.63428 6.82963 6.98556 7.10369 7.43089 7.69425 7.87742 8.17464 8.28300 8.67935 8.86792 9.49664 10.98272 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.050351 B = 0.003264 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.960365 B = 8575.376507 C = 8893.318421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.046 3.954 10 H 0.042 0.958 11 C -0.114 4.114 12 C 0.097 3.903 13 N -0.614 5.614 14 C 0.518 3.482 15 O -0.559 6.559 16 C -0.135 4.135 17 C -0.095 4.095 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.121 4.121 23 C 0.107 3.893 24 H 0.262 0.738 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 -18.061 -4.673 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.026 4.026 13 N -0.346 5.346 14 C 0.307 3.693 15 O -0.439 6.439 16 C -0.175 4.175 17 C -0.133 4.133 18 C -0.112 4.112 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.015 4.015 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.339 -18.193 -4.289 18.987 hybrid contribution 0.324 1.045 -0.147 1.104 sum -3.015 -17.148 -4.436 17.967 Atomic orbital electron populations 1.69931 1.05942 1.26910 1.49880 1.24955 0.94874 0.99157 0.94696 0.86617 0.79580 0.82836 0.78752 1.20190 1.21271 1.20156 1.20921 0.92946 0.89851 1.51694 0.92278 1.19829 0.92789 0.91062 0.93611 0.94007 1.22648 1.02586 0.89045 1.00942 1.22271 0.89727 0.97615 0.93015 1.48847 1.33215 1.05197 1.47367 1.20318 0.84980 0.82161 0.81837 1.90648 1.33179 1.80254 1.39801 1.21661 1.00208 0.94236 1.01414 1.21458 0.99228 0.91561 1.01007 1.21826 0.94824 0.94599 0.99928 1.22510 0.95746 0.96388 1.01379 1.22506 0.97233 0.95544 1.01047 1.22355 0.94932 0.98711 1.00283 1.22208 0.98424 0.95041 1.00233 1.22575 0.95667 0.86194 0.97049 0.92802 0.90264 0.92108 0.92594 0.92921 0.89272 0.89484 0.91390 0.91211 0.91108 0.91301 0.91669 0.91749 0.91820 0.92070 0.91703 0.92069 0.91525 0.92438 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 12.62 55.43 0.70 -23.78 16 2 C 0.07 1.75 5.37 -17.82 -0.10 1.66 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.67 8.49 -34.44 -0.29 -13.97 16 8 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.11 2.85 -89.62 -0.26 0.86 16 10 H 0.04 1.10 8.14 -51.92 -0.42 0.68 16 11 C -0.11 -2.42 5.91 -24.90 -0.15 -2.57 16 12 C 0.10 1.68 6.51 -2.92 -0.02 1.66 16 13 N -0.61 -11.87 3.34 -170.31 -0.57 -12.44 16 14 C 0.52 9.52 7.85 -10.99 -0.09 9.43 16 15 O -0.56 -12.12 16.24 5.55 0.09 -12.03 16 16 C -0.14 -1.79 4.75 -27.89 -0.13 -1.92 16 17 C -0.09 -1.16 3.63 -26.73 -0.10 -1.25 16 18 C -0.09 -0.90 2.94 -89.50 -0.26 -1.16 16 19 C -0.12 -1.12 5.50 -25.03 -0.14 -1.26 16 20 C -0.13 -1.02 6.91 -24.70 -0.17 -1.19 16 21 C -0.13 -1.03 6.83 -25.07 -0.17 -1.20 16 22 C -0.12 -1.08 6.46 -25.61 -0.17 -1.25 16 23 C 0.11 2.34 6.34 -2.53 -0.02 2.33 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.08 1.78 7.85 -51.93 -0.41 1.37 16 26 H 0.06 1.32 8.03 -51.93 -0.42 0.91 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.07 7.48 -51.93 -0.39 0.68 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.07 0.94 7.98 -51.93 -0.41 0.52 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 42 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 43 H 0.06 1.37 8.03 -51.93 -0.42 0.96 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -28.95 339.95 -9.60 -38.55 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.88 Total: -1.28 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.05 Total: -9.82 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.13 Total: -36.22 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.95 -9.60 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397695459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.173 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds