Wall clock time and date at job start Mon Mar 30 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48495 * 109.47281 * 239.99914 * 3 2 1 5 5 H 1.48496 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47181 * 120.00235 * 3 2 1 7 7 C 1.37878 * 120.00648 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99440 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.88471 * 303.87929 * 9 7 2 11 11 C 1.55154 * 111.00686 * 67.80199 * 9 7 2 12 12 C 1.54325 * 102.94303 * 153.57472 * 11 9 7 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.34774 * 125.79121 * 178.92556 * 13 12 11 15 15 O 1.21284 * 119.99787 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00339 * 359.97438 * 14 13 12 17 17 C 1.52994 * 109.47372 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47371 * 180.02562 * 17 16 14 19 19 C 1.54271 * 110.02836 * 292.91037 * 18 17 16 20 20 C 1.54964 * 104.15811 * 217.13718 * 19 18 17 21 21 C 1.54887 * 102.77994 * 37.88714 * 20 19 18 22 22 C 1.53878 * 110.03248 * 175.69634 * 18 17 16 23 23 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 24 24 H 0.97002 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.72290 * 271.94159 * 11 9 7 26 26 H 1.08994 * 110.71922 * 35.03627 * 11 9 7 27 27 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 28 28 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 29 29 H 1.09001 * 109.47139 * 300.00399 * 16 14 13 30 30 H 1.09007 * 109.46778 * 60.00102 * 16 14 13 31 31 H 1.09004 * 109.47534 * 300.00736 * 17 16 14 32 32 H 1.09007 * 109.47102 * 60.00281 * 17 16 14 33 33 H 1.08996 * 110.01501 * 54.30058 * 18 17 16 34 34 H 1.09000 * 110.48537 * 335.77859 * 19 18 17 35 35 H 1.09002 * 110.48535 * 98.42624 * 19 18 17 36 36 H 1.09013 * 110.71775 * 279.57737 * 20 19 18 37 37 H 1.08994 * 110.92652 * 156.30145 * 20 19 18 38 38 H 1.09004 * 110.49218 * 203.41148 * 21 20 19 39 39 H 1.08994 * 110.60044 * 80.81675 * 21 20 19 40 40 H 1.09001 * 110.02575 * 238.57007 * 22 18 17 41 41 H 1.08996 * 110.02893 * 359.94404 * 22 18 17 42 42 H 1.09002 * 110.36696 * 265.26054 * 23 13 12 43 43 H 1.08995 * 110.36608 * 143.04891 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5648 -2.5523 0.8435 11 6 0.4996 -2.7063 -1.3432 12 6 0.3981 -4.2426 -1.4489 13 7 1.4607 -4.8111 -0.6020 14 6 1.6955 -6.1239 -0.4071 15 8 2.6036 -6.4767 0.3153 16 6 0.8297 -7.1533 -1.0866 17 6 1.3049 -8.5551 -0.6996 18 6 0.4263 -9.6003 -1.3899 19 6 -1.0078 -9.5419 -0.8242 20 6 -1.4610 -11.0233 -0.7865 21 6 -0.1700 -11.7658 -0.3611 22 6 0.9587 -11.0137 -1.0960 23 6 2.2259 -3.7030 -0.0021 24 1 -0.4850 0.8400 0.0004 25 1 -0.4923 -2.2561 -1.3032 26 1 1.0740 -2.2970 -2.1742 27 1 -0.5769 -4.5751 -1.0927 28 1 0.5401 -4.5531 -2.4840 29 1 -0.2058 -7.0215 -0.7727 30 1 0.9000 -7.0309 -2.1674 31 1 2.3405 -8.6872 -1.0131 32 1 1.2342 -8.6773 0.3813 33 1 0.4109 -9.4232 -2.4653 34 1 -1.0046 -9.1185 0.1802 35 1 -1.6541 -8.9610 -1.4822 36 1 -1.7881 -11.3517 -1.7732 37 1 -2.2514 -11.1700 -0.0505 38 1 -0.2057 -12.8072 -0.6811 39 1 -0.0299 -11.7039 0.7181 40 1 1.2010 -11.5229 -2.0288 41 1 1.8436 -10.9550 -0.4623 42 1 3.1054 -3.4788 -0.6058 43 1 2.5201 -3.9533 1.0171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397695459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:43 Heat of formation + Delta-G solvation = -88.224271 kcal Electronic energy + Delta-G solvation = -20098.415712 eV Core-core repulsion = 17141.030914 eV Total energy + Delta-G solvation = -2957.384798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99999 -39.30352 -38.30505 -34.97112 -34.07491 -32.15584 -30.12894 -29.59402 -28.95886 -26.81276 -24.59373 -23.28092 -21.62061 -21.45229 -20.41639 -20.01235 -18.59430 -17.92359 -16.98284 -16.80652 -16.50261 -16.14963 -15.71065 -15.63839 -14.55837 -14.45170 -14.29114 -14.14585 -13.74456 -13.58807 -13.32786 -13.02477 -12.97256 -12.89674 -12.58152 -12.31247 -12.26751 -11.92474 -11.81675 -11.68009 -11.62438 -11.46127 -11.40294 -11.33844 -11.17343 -10.98428 -10.76906 -10.51331 -9.55548 -8.16979 -6.26624 1.43998 1.44604 1.52286 1.67066 2.12830 2.44187 3.15099 3.57456 3.72023 3.80513 3.93614 4.06579 4.16471 4.21269 4.33489 4.41538 4.49811 4.60940 4.62497 4.65144 4.74475 4.76922 4.78569 4.82621 4.85309 4.94597 5.03420 5.08711 5.13684 5.23002 5.25410 5.27656 5.32411 5.40520 5.44989 5.53210 5.55850 5.62395 5.75932 5.85821 6.26803 6.69247 6.79706 7.19907 7.41222 8.92584 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.050351 B = 0.003264 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.960365 B = 8575.376507 C = 8893.318421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.040 3.960 10 H 0.011 0.989 11 C -0.105 4.105 12 C 0.106 3.894 13 N -0.618 5.618 14 C 0.512 3.488 15 O -0.599 6.599 16 C -0.123 4.123 17 C -0.089 4.089 18 C -0.087 4.087 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.124 4.124 23 C 0.116 3.884 24 H 0.264 0.736 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -19.096 -6.382 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.029 0.971 11 C -0.144 4.144 12 C -0.016 4.016 13 N -0.351 5.351 14 C 0.303 3.697 15 O -0.481 6.481 16 C -0.163 4.163 17 C -0.127 4.127 18 C -0.106 4.106 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.007 4.007 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.217 -19.242 -6.011 20.595 hybrid contribution 0.620 1.353 0.443 1.553 sum -3.596 -17.889 -5.568 19.078 Atomic orbital electron populations 1.70028 1.07057 1.27663 1.50442 1.25664 0.95690 1.02181 0.94357 0.85659 0.78438 0.79033 0.78819 1.19459 1.20740 1.20052 1.21233 0.92992 0.91334 1.51917 0.92823 1.19722 0.92893 0.91192 0.94123 0.97130 1.22425 1.00980 0.92262 0.98710 1.22283 0.90161 0.94361 0.94807 1.48936 1.33393 1.05160 1.47611 1.21316 0.84893 0.82242 0.81205 1.90631 1.35155 1.80733 1.41610 1.21713 0.99757 0.92454 1.02333 1.21405 0.99173 0.92046 1.00116 1.21794 0.94551 0.93913 1.00314 1.22528 0.95504 0.97295 1.00913 1.22510 0.97132 0.94693 1.01759 1.22371 0.94812 0.99378 0.99827 1.22228 0.98270 0.94960 1.00672 1.22226 0.95381 0.86723 0.96329 0.92719 0.91691 0.92842 0.90249 0.89241 0.87315 0.86731 0.92728 0.93144 0.89742 0.92473 0.90574 0.90730 0.91412 0.90935 0.92422 0.90959 0.92657 0.92937 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.80 12.62 21.45 0.27 -50.53 16 2 C 0.02 1.13 5.37 84.66 0.45 1.59 16 3 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.54 -29.00 8.49 25.60 0.22 -28.78 16 8 H 0.05 2.88 7.77 -2.91 -0.02 2.86 16 9 C 0.04 1.97 2.85 -10.15 -0.03 1.94 16 10 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 11 C -0.11 -4.44 5.91 31.78 0.19 -4.25 16 12 C 0.11 3.41 6.51 86.68 0.56 3.97 16 13 N -0.62 -23.29 3.34 -811.11 -2.71 -26.00 16 14 C 0.51 18.25 7.85 87.66 0.69 18.94 16 15 O -0.60 -26.20 16.24 -3.04 -0.05 -26.24 16 16 C -0.12 -2.92 4.75 29.85 0.14 -2.78 16 17 C -0.09 -2.06 3.63 30.59 0.11 -1.95 16 18 C -0.09 -1.47 2.94 -10.07 -0.03 -1.50 16 19 C -0.12 -1.95 5.50 31.70 0.17 -1.78 16 20 C -0.12 -1.68 6.91 31.91 0.22 -1.46 16 21 C -0.13 -1.83 6.83 31.67 0.22 -1.62 16 22 C -0.12 -1.99 6.46 31.32 0.20 -1.78 16 23 C 0.12 5.21 6.34 86.85 0.55 5.76 16 24 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 25 H 0.06 2.91 7.85 -2.39 -0.02 2.89 16 26 H 0.05 2.30 8.03 -2.39 -0.02 2.28 16 27 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.11 2.22 7.48 -2.39 -0.02 2.20 16 30 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.05 1.39 8.10 -2.38 -0.02 1.37 16 32 H 0.05 1.34 7.98 -2.38 -0.02 1.33 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.03 7.77 -2.39 -0.02 1.01 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 1.00 7.67 -2.39 -0.02 0.99 16 42 H 0.05 2.38 8.01 -2.39 -0.02 2.36 16 43 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 Total: -1.00 -63.60 339.95 4.16 -59.45 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.94 Total: 12.45 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 3.67 Total: -13.69 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -2.43 Total: -76.53 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -63.60 4.16 -59.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397695459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.779 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds