Wall clock time and date at job start Mon Mar 30 2020 08:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.05524 * 2 1 4 4 C 1.54267 * 110.02920 * 238.58196 * 2 1 3 5 5 C 1.54898 * 104.19279 * 217.10376 * 4 2 1 6 6 C 1.54884 * 102.74559 * 37.94292 * 5 4 2 7 7 C 1.53873 * 110.03307 * 121.41503 * 2 1 3 8 8 H 1.09001 * 110.03586 * 238.56862 * 7 2 1 9 9 C 1.50701 * 110.03383 * 359.97438 * 7 2 1 10 10 O 1.21283 * 119.99767 * 83.44833 * 9 7 2 11 11 N 1.34776 * 120.00286 * 263.44772 * 9 7 2 12 12 C 1.47024 * 125.64377 * 359.69599 * 11 9 7 13 13 C 1.54338 * 107.26272 * 178.84988 * 12 11 9 14 14 C 1.55158 * 103.01890 * 338.13677 * 13 12 11 15 15 H 1.09006 * 111.00600 * 277.23113 * 14 13 12 16 16 C 1.50707 * 111.03565 * 153.40075 * 14 13 12 17 17 H 1.07997 * 119.99319 * 247.77929 * 16 14 13 18 18 C 1.37876 * 120.00121 * 67.78275 * 16 14 13 19 19 N 1.31519 * 119.99814 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99769 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47304 * 60.00271 * 20 18 16 22 22 H 1.48505 * 109.46967 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47343 * 299.99747 * 20 18 16 24 24 C 1.47428 * 125.65092 * 179.97438 * 11 9 7 25 25 H 1.09008 * 109.46857 * 296.56864 * 1 2 3 26 26 H 1.08997 * 109.47231 * 56.57314 * 1 2 3 27 27 H 1.08999 * 109.46762 * 176.57581 * 1 2 3 28 28 H 1.08998 * 109.46982 * 181.42248 * 3 2 1 29 29 H 1.09002 * 109.46662 * 301.41618 * 3 2 1 30 30 H 1.09000 * 109.47048 * 61.41461 * 3 2 1 31 31 H 1.09003 * 110.48511 * 98.42686 * 4 2 1 32 32 H 1.08997 * 110.48751 * 335.78057 * 4 2 1 33 33 H 1.08997 * 110.75549 * 279.62912 * 5 4 2 34 34 H 1.08997 * 110.91244 * 156.33093 * 5 4 2 35 35 H 1.09000 * 110.48390 * 203.37707 * 6 5 4 36 36 H 1.09003 * 110.60333 * 80.79466 * 6 5 4 37 37 H 1.09000 * 109.88292 * 298.38786 * 12 11 9 38 38 H 1.08998 * 109.88910 * 59.55858 * 12 11 9 39 39 H 1.09000 * 110.84730 * 219.67309 * 13 12 11 40 40 H 1.08994 * 110.67019 * 96.52172 * 13 12 11 41 41 H 0.96996 * 119.99565 * 180.02562 * 19 18 16 42 42 H 1.08995 * 110.36410 * 322.93799 * 24 11 9 43 43 H 1.08998 * 110.36309 * 85.25514 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3137 -1.5008 -0.7191 6 6 2.8875 -1.9406 0.7035 7 6 2.0572 -0.7535 1.2337 8 1 2.6868 -0.0953 1.8325 9 6 0.9039 -1.2586 2.0619 10 8 0.3622 -2.3046 1.7731 11 7 0.4743 -0.5479 3.1235 12 6 1.0413 0.7268 3.5873 13 6 0.2137 1.1786 4.8092 14 6 -1.1243 0.4143 4.6270 15 1 -1.7847 0.9414 3.9384 16 6 -1.8023 0.1870 5.9536 17 1 -1.8922 -0.8138 6.3495 18 6 -2.3079 1.2565 6.6617 19 7 -2.1989 2.4751 6.1792 20 14 -3.1477 0.9746 8.3063 21 1 -2.1909 0.3408 9.2485 22 1 -3.6003 2.2759 8.8604 23 1 -4.3202 0.0832 8.1171 24 6 -0.6381 -0.9230 4.0153 25 1 -0.3633 0.4597 0.9192 26 1 -0.3633 0.5661 -0.8576 27 1 -0.3633 -1.0258 -0.0614 28 1 3.1444 1.4262 -0.0255 29 1 1.6761 1.9622 -0.8771 30 1 1.7174 1.9471 0.9024 31 1 2.3297 -0.0536 -2.0255 32 1 1.3142 -1.4661 -1.5966 33 1 4.1710 -0.8291 -0.6751 34 1 3.5357 -2.3678 -1.3412 35 1 3.7637 -2.1036 1.3310 36 1 2.2778 -2.8431 0.6595 37 1 2.0834 0.5865 3.8744 38 1 0.9698 1.4739 2.7968 39 1 0.0484 2.2558 4.7889 40 1 0.7038 0.8824 5.7366 41 1 -2.5543 3.2276 6.6776 42 1 -1.4394 -1.3930 3.4452 43 1 -0.2860 -1.5929 4.7997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397697137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:23:28 Heat of formation + Delta-G solvation = -63.051080 kcal Electronic energy + Delta-G solvation = -21406.267299 eV Core-core repulsion = 18449.974093 eV Total energy + Delta-G solvation = -2956.293207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41209 -37.96037 -36.42214 -33.04155 -32.18541 -30.60613 -29.08072 -28.24182 -27.26374 -25.20875 -24.35881 -22.38845 -20.87836 -19.88585 -19.44765 -17.75935 -16.91373 -16.35739 -15.65432 -15.32614 -14.73286 -14.52916 -14.17490 -13.78172 -13.45838 -13.03912 -12.79994 -12.76507 -12.45832 -12.13455 -11.84282 -11.63276 -11.54741 -11.26471 -11.22297 -11.04689 -11.02238 -10.79508 -10.66952 -10.55487 -10.51908 -10.48391 -10.34167 -9.81037 -9.46523 -9.16430 -8.99565 -8.47741 -7.93842 -6.11543 -4.14912 3.10080 3.28644 3.33277 3.36016 3.62330 4.38203 4.46782 4.59065 4.71567 5.13483 5.22708 5.27424 5.31991 5.34635 5.43658 5.50463 5.63188 5.65978 5.71588 5.80643 5.85510 5.89400 5.91389 5.99340 6.04240 6.07971 6.13913 6.22225 6.31794 6.37948 6.40470 6.42848 6.52324 6.64120 6.84802 6.99303 7.12176 7.43603 7.69830 7.88143 8.19308 8.29064 8.71382 8.87235 9.50128 10.98620 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038499 B = 0.004680 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.119584 B = 5981.595239 C = 6234.182192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.104 4.104 8 H 0.087 0.913 9 C 0.535 3.465 10 O -0.557 6.557 11 N -0.611 5.611 12 C 0.096 3.904 13 C -0.113 4.113 14 C 0.047 3.953 15 H 0.041 0.959 16 C -0.516 4.516 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.107 3.893 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.262 0.738 42 H 0.060 0.940 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 -1.671 -11.676 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.125 4.125 8 H 0.106 0.894 9 C 0.324 3.676 10 O -0.437 6.437 11 N -0.343 5.343 12 C -0.027 4.027 13 C -0.152 4.152 14 C 0.028 3.972 15 H 0.059 0.941 16 C -0.554 4.554 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.014 4.014 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.359 -2.057 -11.832 15.860 hybrid contribution -0.408 0.118 1.069 1.150 sum 9.951 -1.939 -10.763 14.786 Atomic orbital electron populations 1.22123 0.93950 1.02894 1.02099 1.20999 0.95976 0.94926 0.93214 1.21965 1.00665 0.94895 1.02187 1.22484 0.97318 0.98749 0.96510 1.22451 0.97560 0.99723 0.96136 1.22352 0.98866 0.98049 0.95825 1.22069 0.95664 0.98415 0.96373 0.89443 1.19982 0.84493 0.83609 0.79561 1.90622 1.58993 1.23932 1.70129 1.48772 1.34530 1.23024 1.28022 1.22255 0.97123 0.84910 0.98426 1.22650 0.97010 1.01753 0.93764 1.19812 0.92351 0.88916 0.96093 0.94060 1.20922 1.37374 0.93532 1.03577 0.92304 1.24947 0.95610 0.95120 0.97943 1.69937 1.45802 0.98421 1.38484 0.86624 0.80004 0.77359 0.83845 1.20193 1.21278 1.20172 1.22567 0.87373 1.00215 0.91267 0.91932 0.92726 0.91463 0.92557 0.92458 0.92172 0.91596 0.91268 0.91663 0.91541 0.91739 0.89745 0.93080 0.92570 0.90297 0.92190 0.92824 0.92148 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.23 37.16 0.27 -1.98 16 2 C -0.05 -0.64 0.94 -153.39 -0.14 -0.78 16 3 C -0.14 -1.52 8.15 37.16 0.30 -1.22 16 4 C -0.11 -1.24 5.90 -25.07 -0.15 -1.38 16 5 C -0.12 -1.23 6.91 -24.74 -0.17 -1.41 16 6 C -0.11 -1.43 6.32 -25.08 -0.16 -1.59 16 7 C -0.10 -1.47 2.61 -90.66 -0.24 -1.70 16 8 H 0.09 1.15 6.53 -51.93 -0.34 0.81 16 9 C 0.53 9.79 4.71 -10.99 -0.05 9.74 16 10 O -0.56 -11.86 15.08 5.55 0.08 -11.78 16 11 N -0.61 -11.74 3.00 -170.53 -0.51 -12.25 16 12 C 0.10 1.68 6.05 -3.06 -0.02 1.66 16 13 C -0.11 -2.41 5.90 -24.89 -0.15 -2.56 16 14 C 0.05 1.14 2.85 -89.63 -0.26 0.88 16 15 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.52 -13.62 8.49 -34.44 -0.29 -13.92 16 17 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 18 C 0.07 1.76 5.37 -17.82 -0.10 1.67 16 19 N -0.89 -24.42 12.62 55.43 0.70 -23.72 16 20 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.11 2.34 6.35 -2.54 -0.02 2.32 16 25 H 0.06 1.05 7.15 -51.92 -0.37 0.67 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.11 6.85 -51.93 -0.36 0.76 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.70 6.98 -51.93 -0.36 0.34 16 31 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 32 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.25 6.93 -51.93 -0.36 0.89 16 37 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 38 H 0.06 0.91 6.98 -51.93 -0.36 0.55 16 39 H 0.08 1.77 7.85 -51.93 -0.41 1.37 16 40 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 43 H 0.06 1.26 8.01 -51.93 -0.42 0.85 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -28.40 329.28 -8.48 -36.88 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.53 Total: 0.51 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.16 Total: -10.27 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.19 Total: -35.97 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.40 -8.48 -36.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397697137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.166 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds