Wall clock time and date at job start Mon Mar 30 2020 08:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.05524 * 2 1 4 4 C 1.54267 * 110.02920 * 238.58196 * 2 1 3 5 5 C 1.54898 * 104.19279 * 217.10376 * 4 2 1 6 6 C 1.54884 * 102.74559 * 37.94292 * 5 4 2 7 7 C 1.53873 * 110.03307 * 121.41503 * 2 1 3 8 8 H 1.09001 * 110.03586 * 238.56862 * 7 2 1 9 9 C 1.50701 * 110.03383 * 359.97438 * 7 2 1 10 10 O 1.21283 * 119.99767 * 83.44833 * 9 7 2 11 11 N 1.34776 * 120.00286 * 263.44772 * 9 7 2 12 12 C 1.47024 * 125.64377 * 359.69599 * 11 9 7 13 13 C 1.54338 * 107.26272 * 178.84988 * 12 11 9 14 14 C 1.55158 * 103.01890 * 338.13677 * 13 12 11 15 15 H 1.09006 * 111.00600 * 277.23113 * 14 13 12 16 16 C 1.50707 * 111.03565 * 153.40075 * 14 13 12 17 17 H 1.07997 * 119.99319 * 247.77929 * 16 14 13 18 18 C 1.37876 * 120.00121 * 67.78275 * 16 14 13 19 19 N 1.31519 * 119.99814 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99769 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47304 * 60.00271 * 20 18 16 22 22 H 1.48505 * 109.46967 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47343 * 299.99747 * 20 18 16 24 24 C 1.47428 * 125.65092 * 179.97438 * 11 9 7 25 25 H 1.09008 * 109.46857 * 296.56864 * 1 2 3 26 26 H 1.08997 * 109.47231 * 56.57314 * 1 2 3 27 27 H 1.08999 * 109.46762 * 176.57581 * 1 2 3 28 28 H 1.08998 * 109.46982 * 181.42248 * 3 2 1 29 29 H 1.09002 * 109.46662 * 301.41618 * 3 2 1 30 30 H 1.09000 * 109.47048 * 61.41461 * 3 2 1 31 31 H 1.09003 * 110.48511 * 98.42686 * 4 2 1 32 32 H 1.08997 * 110.48751 * 335.78057 * 4 2 1 33 33 H 1.08997 * 110.75549 * 279.62912 * 5 4 2 34 34 H 1.08997 * 110.91244 * 156.33093 * 5 4 2 35 35 H 1.09000 * 110.48390 * 203.37707 * 6 5 4 36 36 H 1.09003 * 110.60333 * 80.79466 * 6 5 4 37 37 H 1.09000 * 109.88292 * 298.38786 * 12 11 9 38 38 H 1.08998 * 109.88910 * 59.55858 * 12 11 9 39 39 H 1.09000 * 110.84730 * 219.67309 * 13 12 11 40 40 H 1.08994 * 110.67019 * 96.52172 * 13 12 11 41 41 H 0.96996 * 119.99565 * 180.02562 * 19 18 16 42 42 H 1.08995 * 110.36410 * 322.93799 * 24 11 9 43 43 H 1.08998 * 110.36309 * 85.25514 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3137 -1.5008 -0.7191 6 6 2.8875 -1.9406 0.7035 7 6 2.0572 -0.7535 1.2337 8 1 2.6868 -0.0953 1.8325 9 6 0.9039 -1.2586 2.0619 10 8 0.3622 -2.3046 1.7731 11 7 0.4743 -0.5479 3.1235 12 6 1.0413 0.7268 3.5873 13 6 0.2137 1.1786 4.8092 14 6 -1.1243 0.4143 4.6270 15 1 -1.7847 0.9414 3.9384 16 6 -1.8023 0.1870 5.9536 17 1 -1.8922 -0.8138 6.3495 18 6 -2.3079 1.2565 6.6617 19 7 -2.1989 2.4751 6.1792 20 14 -3.1477 0.9746 8.3063 21 1 -2.1909 0.3408 9.2485 22 1 -3.6003 2.2759 8.8604 23 1 -4.3202 0.0832 8.1171 24 6 -0.6381 -0.9230 4.0153 25 1 -0.3633 0.4597 0.9192 26 1 -0.3633 0.5661 -0.8576 27 1 -0.3633 -1.0258 -0.0614 28 1 3.1444 1.4262 -0.0255 29 1 1.6761 1.9622 -0.8771 30 1 1.7174 1.9471 0.9024 31 1 2.3297 -0.0536 -2.0255 32 1 1.3142 -1.4661 -1.5966 33 1 4.1710 -0.8291 -0.6751 34 1 3.5357 -2.3678 -1.3412 35 1 3.7637 -2.1036 1.3310 36 1 2.2778 -2.8431 0.6595 37 1 2.0834 0.5865 3.8744 38 1 0.9698 1.4739 2.7968 39 1 0.0484 2.2558 4.7889 40 1 0.7038 0.8824 5.7366 41 1 -2.5543 3.2276 6.6776 42 1 -1.4394 -1.3930 3.4452 43 1 -0.2860 -1.5929 4.7997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397697137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:23:27 Heat of formation + Delta-G solvation = -77.787502 kcal Electronic energy + Delta-G solvation = -21406.906319 eV Core-core repulsion = 18449.974093 eV Total energy + Delta-G solvation = -2956.932226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.71873 -39.33434 -37.97520 -34.97327 -33.16705 -32.31591 -30.40956 -29.80442 -28.25866 -26.92822 -25.58346 -23.94131 -22.06321 -21.45240 -20.81199 -19.12932 -18.56663 -17.98882 -17.00315 -16.62736 -16.53514 -15.90307 -15.43204 -15.16852 -14.55565 -14.44486 -14.32848 -14.00610 -13.76416 -13.61117 -13.34203 -13.06804 -12.93294 -12.87409 -12.69921 -12.57930 -12.37647 -12.26843 -11.91493 -11.75540 -11.63997 -11.51285 -11.39969 -11.36868 -11.31336 -10.97564 -10.66330 -10.51563 -9.53589 -8.17114 -6.26890 1.43717 1.44458 1.52057 1.66399 2.12197 2.44004 3.14906 3.43459 3.57773 3.65267 4.01011 4.03990 4.25912 4.32372 4.36244 4.40694 4.43352 4.45868 4.48631 4.51254 4.69950 4.74188 4.77421 4.79009 4.87826 5.00737 5.03834 5.06384 5.09426 5.18027 5.22513 5.24019 5.32935 5.35489 5.40251 5.48471 5.54740 5.56194 5.74447 5.85091 6.26313 6.69661 6.79302 7.22244 7.41079 8.92482 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038499 B = 0.004680 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.119584 B = 5981.595239 C = 6234.182192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.137 4.137 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.100 4.100 8 H 0.106 0.894 9 C 0.531 3.469 10 O -0.593 6.593 11 N -0.616 5.616 12 C 0.106 3.894 13 C -0.104 4.104 14 C 0.043 3.957 15 H 0.009 0.991 16 C -0.537 4.537 17 H 0.053 0.947 18 C 0.023 3.977 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.275 1.275 24 C 0.118 3.882 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.264 0.736 42 H 0.042 0.958 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.011 -0.965 -12.499 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.051 4.051 3 C -0.194 4.194 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.121 4.121 8 H 0.124 0.876 9 C 0.322 3.678 10 O -0.475 6.475 11 N -0.348 5.348 12 C -0.016 4.016 13 C -0.142 4.142 14 C 0.024 3.976 15 H 0.027 0.973 16 C -0.575 4.575 17 H 0.072 0.928 18 C -0.178 4.178 19 N -0.552 5.552 20 Si 0.780 3.220 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.201 1.201 24 C -0.005 4.005 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.716 -1.346 -12.664 17.996 hybrid contribution -1.211 -0.141 1.298 1.781 sum 11.504 -1.487 -11.365 16.240 Atomic orbital electron populations 1.22067 0.96101 1.01011 1.01468 1.21077 0.94125 0.96519 0.93353 1.21951 1.02046 0.93018 1.02340 1.22486 0.97329 0.98863 0.96220 1.22449 0.97735 1.00527 0.94148 1.22383 0.98658 0.96229 0.98043 1.22205 0.94005 0.99490 0.96422 0.87589 1.20858 0.85055 0.82862 0.78983 1.90603 1.60436 1.25673 1.70809 1.48836 1.33946 1.23783 1.28207 1.22231 0.97781 0.84396 0.97196 1.22419 0.95987 1.00433 0.95369 1.19686 0.93171 0.90129 0.94626 0.97264 1.21229 1.38105 0.93477 1.04691 0.92828 1.25652 0.96139 0.94856 1.01103 1.70036 1.46445 0.98999 1.39683 0.85661 0.78983 0.77347 0.79971 1.19456 1.20725 1.20064 1.22212 0.88040 0.98872 0.91362 0.94575 0.90944 0.94266 0.90302 0.91254 0.93127 0.89141 0.92736 0.89254 0.90390 0.90169 0.92581 0.89763 0.90706 0.91706 0.92867 0.92731 0.93960 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 7.23 71.98 0.52 -3.83 16 2 C -0.05 -1.15 0.94 -51.46 -0.05 -1.20 16 3 C -0.14 -2.45 8.15 71.98 0.59 -1.87 16 4 C -0.11 -2.11 5.90 31.67 0.19 -1.92 16 5 C -0.11 -1.85 6.91 31.89 0.22 -1.63 16 6 C -0.12 -2.66 6.32 31.67 0.20 -2.46 16 7 C -0.10 -2.62 2.61 -10.82 -0.03 -2.65 16 8 H 0.11 2.39 6.53 -2.39 -0.02 2.38 16 9 C 0.53 19.46 4.71 87.66 0.41 19.87 16 10 O -0.59 -26.09 15.08 -3.04 -0.05 -26.13 16 11 N -0.62 -23.75 3.00 -811.81 -2.44 -26.18 16 12 C 0.11 3.58 6.05 86.73 0.52 4.10 16 13 C -0.10 -4.44 5.90 31.79 0.19 -4.26 16 14 C 0.04 2.14 2.85 -10.15 -0.03 2.11 16 15 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 16 C -0.54 -29.14 8.49 25.60 0.22 -28.92 16 17 H 0.05 2.89 7.77 -2.91 -0.02 2.87 16 18 C 0.02 1.22 5.37 84.65 0.45 1.67 16 19 N -0.91 -50.94 12.62 21.45 0.27 -50.67 16 20 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 C 0.12 5.34 6.35 86.85 0.55 5.89 16 25 H 0.04 1.22 7.15 -2.38 -0.02 1.20 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.34 6.85 -2.39 -0.02 1.32 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.01 6.98 -2.39 -0.02 1.00 16 31 H 0.09 1.30 7.84 -2.39 -0.02 1.28 16 32 H 0.05 1.19 7.81 -2.39 -0.02 1.17 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.63 6.93 -2.39 -0.02 1.61 16 37 H 0.08 2.35 7.88 -2.39 -0.02 2.33 16 38 H 0.07 2.28 6.98 -2.39 -0.02 2.27 16 39 H 0.06 2.95 7.85 -2.39 -0.02 2.93 16 40 H 0.05 2.32 8.03 -2.39 -0.02 2.30 16 41 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 43 H 0.05 2.38 8.01 -2.39 -0.02 2.36 16 Total: -1.00 -63.66 329.28 4.73 -58.93 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.96 Total: 14.46 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 3.96 Total: -15.09 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.17 Total: -76.85 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -63.66 4.73 -58.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397697137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.859 kcal (2) G-P(sol) polarization free energy of solvation -63.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds