Wall clock time and date at job start Mon Mar 30 2020 08:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.05692 * 2 1 4 4 C 1.53879 * 110.03224 * 121.41330 * 2 1 3 5 5 C 1.54274 * 106.59667 * 119.28592 * 4 2 1 6 6 C 1.54892 * 104.31241 * 336.32422 * 5 4 2 7 7 C 1.54268 * 110.03443 * 238.58080 * 2 1 3 8 8 H 1.09005 * 110.48429 * 145.51439 * 7 2 1 9 9 C 1.50704 * 110.48401 * 23.00490 * 7 2 1 10 10 O 1.21277 * 119.99812 * 278.02439 * 9 7 2 11 11 N 1.34779 * 119.99805 * 98.02307 * 9 7 2 12 12 C 1.47426 * 125.65118 * 0.02729 * 11 9 7 13 13 C 1.54906 * 104.83061 * 204.09365 * 12 11 9 14 14 C 1.55157 * 101.58144 * 322.98640 * 13 12 11 15 15 H 1.08998 * 110.72130 * 276.96668 * 14 13 12 16 16 C 1.50693 * 110.72396 * 153.86890 * 14 13 12 17 17 H 1.08002 * 120.00693 * 236.51376 * 16 14 13 18 18 C 1.37884 * 120.00116 * 56.50758 * 16 14 13 19 19 N 1.31517 * 119.99852 * 7.18899 * 18 16 14 20 20 Si 1.86793 * 120.00309 * 187.19043 * 18 16 14 21 21 H 1.48504 * 109.46842 * 94.92710 * 20 18 16 22 22 H 1.48502 * 109.47240 * 214.92817 * 20 18 16 23 23 H 1.48502 * 109.47151 * 334.93234 * 20 18 16 24 24 C 1.47021 * 125.64682 * 179.71659 * 11 9 7 25 25 H 1.08993 * 109.47106 * 293.73764 * 1 2 3 26 26 H 1.09003 * 109.47062 * 53.74213 * 1 2 3 27 27 H 1.08998 * 109.47113 * 173.73588 * 1 2 3 28 28 H 1.09003 * 109.47119 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46965 * 299.96426 * 3 2 1 30 30 H 1.08998 * 109.46897 * 59.96151 * 3 2 1 31 31 H 1.08996 * 110.03108 * 0.02562 * 4 2 1 32 32 H 1.08999 * 110.07252 * 238.58862 * 4 2 1 33 33 H 1.08998 * 110.48158 * 95.06870 * 5 4 2 34 34 H 1.09000 * 110.48555 * 217.58240 * 5 4 2 35 35 H 1.09001 * 110.75328 * 156.31961 * 6 5 4 36 36 H 1.08992 * 110.75723 * 279.69670 * 6 5 4 37 37 H 1.09006 * 110.36108 * 322.92893 * 12 11 9 38 38 H 1.08994 * 110.36705 * 85.24663 * 12 11 9 39 39 H 1.08994 * 111.01071 * 81.06320 * 13 12 11 40 40 H 1.09004 * 111.00331 * 204.91283 * 13 12 11 41 41 H 0.96990 * 120.00402 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.87868 * 298.39428 * 24 11 9 43 43 H 1.08994 * 109.88197 * 59.55618 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0571 -0.7535 1.2338 5 6 2.8875 -1.9407 0.7036 6 6 2.3290 -2.1937 -0.7188 7 6 2.0585 -0.7555 -1.2368 8 1 2.9799 -0.2986 -1.5980 9 6 1.0183 -0.7751 -2.3272 10 8 0.1265 -1.5965 -2.2998 11 7 1.0792 0.1204 -3.3326 12 6 2.1042 1.1683 -3.4891 13 6 1.4282 2.2575 -4.3588 14 6 0.5862 1.3967 -5.3372 15 1 1.1979 1.0495 -6.1698 16 6 -0.6045 2.1716 -5.8399 17 1 -1.6012 1.7784 -5.7045 18 6 -0.4216 3.3830 -6.4726 19 7 0.7926 3.7959 -6.7640 20 14 -1.8982 4.4376 -6.9159 21 1 -2.1346 5.4349 -5.8413 22 1 -1.6365 5.1424 -8.1966 23 1 -3.0973 3.5739 -7.0622 24 6 0.1379 0.2098 -4.4585 25 1 -0.3633 0.4137 0.9407 26 1 -0.3633 0.6078 -0.8287 27 1 -0.3633 -1.0215 -0.1121 28 1 3.1447 1.4261 0.0005 29 1 1.6971 1.9545 -0.8903 30 1 1.6961 1.9549 0.8896 31 1 1.2229 -1.1195 1.8323 32 1 2.6865 -0.0957 1.8332 33 1 3.9440 -1.6766 0.6572 34 1 2.7419 -2.8190 1.3324 35 1 3.0689 -2.6980 -1.3403 36 1 1.4041 -2.7686 -0.6740 37 1 2.3808 1.5766 -2.5170 38 1 2.9817 0.7679 -3.9968 39 1 0.7884 2.8995 -3.7534 40 1 2.1721 2.8454 -4.8966 41 1 0.9214 4.6478 -7.2094 42 1 0.1640 -0.7133 -5.0376 43 1 -0.8706 0.3874 -4.0853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397697140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:23:32 Heat of formation + Delta-G solvation = -76.839842 kcal Electronic energy + Delta-G solvation = -21458.353503 eV Core-core repulsion = 18501.462370 eV Total energy + Delta-G solvation = -2956.891132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65689 -39.35211 -37.99741 -34.99034 -33.14598 -32.27447 -30.41612 -29.81727 -28.25255 -26.94128 -25.59188 -23.92253 -22.16618 -21.42896 -20.71652 -19.15071 -18.56944 -18.03371 -16.90102 -16.59769 -16.42407 -16.19403 -15.33172 -15.00702 -14.52816 -14.48671 -14.31392 -14.18513 -13.74783 -13.70130 -13.24220 -13.12213 -12.92849 -12.82802 -12.69507 -12.64604 -12.40474 -12.27392 -11.94696 -11.70890 -11.58820 -11.50697 -11.37673 -11.35411 -11.28793 -10.95753 -10.64266 -10.51381 -9.54155 -8.18197 -6.26476 1.40242 1.42558 1.52096 1.66489 2.13314 2.42751 3.13246 3.42904 3.59455 3.66298 4.00722 4.04514 4.27529 4.30580 4.38406 4.41386 4.42592 4.46446 4.48547 4.50624 4.65176 4.73044 4.76228 4.78923 4.91561 5.00481 5.01402 5.08246 5.13100 5.17138 5.23423 5.25596 5.33301 5.35683 5.42084 5.48027 5.55118 5.58400 5.76830 5.85212 6.26412 6.69654 6.78247 7.23397 7.40585 8.90981 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.004883 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.222789 B = 5732.944237 C = 5831.940065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.101 4.101 8 H 0.108 0.892 9 C 0.529 3.471 10 O -0.591 6.591 11 N -0.614 5.614 12 C 0.098 3.902 13 C -0.095 4.095 14 C 0.038 3.962 15 H 0.016 0.984 16 C -0.540 4.540 17 H 0.047 0.953 18 C 0.027 3.973 19 N -0.908 5.908 20 Si 0.951 3.049 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.274 1.274 24 C 0.122 3.878 25 H 0.071 0.929 26 H 0.023 0.977 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.264 0.736 42 H 0.040 0.960 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 -5.320 15.783 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 C -0.202 4.202 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.122 4.122 8 H 0.126 0.874 9 C 0.320 3.680 10 O -0.472 6.472 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.134 4.134 14 C 0.019 3.981 15 H 0.034 0.966 16 C -0.578 4.578 17 H 0.065 0.935 18 C -0.174 4.174 19 N -0.546 5.546 20 Si 0.776 3.224 21 H -0.200 1.200 22 H -0.205 1.205 23 H -0.199 1.199 24 C -0.001 4.001 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.635 -5.647 15.767 18.406 hybrid contribution -1.250 0.643 -1.072 1.767 sum 6.386 -5.004 14.695 16.786 Atomic orbital electron populations 1.21976 0.95660 1.01135 1.00940 1.21081 0.94585 0.96008 0.93472 1.22067 1.02059 0.93994 1.02038 1.22270 0.99887 0.96952 0.95548 1.22325 1.00106 0.98466 0.94187 1.22514 1.01118 0.93477 0.97704 1.22451 0.96886 0.99973 0.92937 0.87385 1.20892 0.86554 0.78876 0.81725 1.90601 1.38749 1.40146 1.77716 1.48833 1.29190 1.32786 1.23824 1.22661 0.90625 0.87857 1.01259 1.22445 0.98612 0.96116 0.96224 1.19623 0.95190 0.90799 0.92475 0.96636 1.21289 0.92747 1.05193 1.38538 0.93453 1.25577 0.98270 0.98585 0.94929 1.70036 1.21816 1.21517 1.41254 0.85659 0.79985 0.78939 0.77784 1.20000 1.20533 1.19901 1.21945 0.92321 0.98526 0.87341 0.91002 0.95779 0.93351 0.90195 0.93919 0.91086 0.91507 0.89257 0.89687 0.90319 0.90721 0.92317 0.88536 0.90658 0.93880 0.90954 0.92650 0.94115 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 7.03 71.98 0.51 -3.46 16 2 C -0.05 -1.16 0.86 -51.46 -0.04 -1.20 16 3 C -0.14 -2.88 7.62 71.98 0.55 -2.33 16 4 C -0.11 -1.83 6.11 31.32 0.19 -1.64 16 5 C -0.11 -1.80 6.82 31.67 0.22 -1.58 16 6 C -0.11 -2.53 6.26 32.01 0.20 -2.33 16 7 C -0.10 -2.65 2.19 -10.34 -0.02 -2.67 16 8 H 0.11 2.44 6.69 -2.38 -0.02 2.42 16 9 C 0.53 19.39 5.27 87.66 0.46 19.86 16 10 O -0.59 -25.83 14.81 -3.02 -0.04 -25.88 16 11 N -0.61 -23.93 3.33 -811.79 -2.70 -26.63 16 12 C 0.10 3.33 6.26 86.85 0.54 3.88 16 13 C -0.10 -4.16 5.66 31.98 0.18 -3.98 16 14 C 0.04 1.89 2.90 -10.35 -0.03 1.86 16 15 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 16 C -0.54 -29.66 8.52 25.60 0.22 -29.44 16 17 H 0.05 2.64 7.64 -2.91 -0.02 2.62 16 18 C 0.03 1.45 5.24 84.66 0.44 1.89 16 19 N -0.91 -50.04 12.07 21.45 0.26 -49.78 16 20 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 C 0.12 5.58 6.46 86.73 0.56 6.14 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.02 0.81 7.41 -2.39 -0.02 0.79 16 27 H 0.05 1.55 7.01 -2.39 -0.02 1.54 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.03 6.24 -2.39 -0.01 1.02 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16 32 H 0.09 1.14 7.67 -2.39 -0.02 1.12 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.65 7.31 -2.39 -0.02 1.63 16 37 H 0.10 2.71 4.86 -2.38 -0.01 2.70 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 40 H 0.07 3.31 7.50 -2.38 -0.02 3.29 16 41 H 0.26 13.82 8.31 -92.72 -0.77 13.04 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.91 7.69 -2.39 -0.02 1.89 16 Total: -1.00 -63.51 325.59 4.48 -59.03 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.97 Total: 13.29 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 3.97 Total: -15.00 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -2.44 Total: -76.40 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -63.51 4.48 -59.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397697140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.815 kcal (2) G-P(sol) polarization free energy of solvation -63.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds