Wall clock time and date at job start Mon Mar 30 2020 07:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99574 * 2 1 4 4 H 1.48494 * 109.47320 * 274.24523 * 3 2 1 5 5 H 1.48502 * 109.47437 * 34.25114 * 3 2 1 6 6 H 1.48509 * 109.46844 * 154.24535 * 3 2 1 7 7 C 1.37872 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99803 * 353.41124 * 7 2 1 9 9 C 1.50695 * 120.00017 * 173.41948 * 7 2 1 10 10 C 1.53004 * 115.55384 * 93.18539 * 9 7 2 11 11 N 1.46497 * 109.46822 * 39.51357 * 10 9 7 12 12 C 1.45988 * 120.11757 * 264.57161 * 11 10 9 13 13 C 1.53936 * 110.56905 * 277.10737 * 12 11 10 14 14 C 1.54710 * 107.33014 * 258.47083 * 13 12 11 15 15 C 1.52775 * 108.41587 * 109.70387 * 14 13 12 16 16 C 1.51064 * 113.52959 * 297.22379 * 15 14 13 17 17 C 1.53078 * 111.79254 * 292.71051 * 16 15 14 18 18 C 1.53606 * 108.13857 * 92.05723 * 17 16 15 19 19 C 1.34489 * 120.12648 * 84.55138 * 11 10 9 20 20 O 1.21279 * 120.63362 * 355.07448 * 19 11 10 21 21 C 1.53002 * 117.51704 * 238.88994 * 9 7 2 22 22 C 1.53003 * 60.00269 * 107.47872 * 21 9 7 23 23 H 0.97003 * 120.00403 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46832 * 279.51027 * 10 9 7 25 25 H 1.09001 * 109.47056 * 159.50924 * 10 9 7 26 26 H 1.09002 * 109.25980 * 37.39391 * 12 11 10 27 27 H 1.09009 * 109.25901 * 156.82974 * 12 11 10 28 28 H 1.08996 * 109.88433 * 17.92711 * 13 12 11 29 29 H 1.09007 * 109.88514 * 139.01286 * 13 12 11 30 30 H 1.09000 * 109.68123 * 229.43648 * 14 13 12 31 31 H 1.09007 * 109.67397 * 349.93643 * 14 13 12 32 32 H 1.08996 * 108.67231 * 58.26913 * 15 14 13 33 33 H 1.09004 * 108.67785 * 176.17992 * 15 14 13 34 34 H 1.09004 * 109.01288 * 53.32440 * 16 15 14 35 35 H 1.08996 * 109.01534 * 172.12568 * 16 15 14 36 36 H 1.09004 * 109.77452 * 332.38993 * 17 16 15 37 37 H 1.08996 * 109.72302 * 211.70365 * 17 16 15 38 38 H 1.09000 * 109.75648 * 283.83741 * 18 17 16 39 39 H 1.09002 * 109.75890 * 163.14142 * 18 17 16 40 40 H 1.09002 * 117.49946 * 214.97217 * 21 9 7 41 41 H 1.08998 * 117.49775 * 359.97438 * 21 9 7 42 42 H 1.08998 * 117.49819 * 252.51081 * 22 21 9 43 43 H 1.08996 * 117.49690 * 107.49155 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4068 2.0983 -1.3962 5 1 1.4943 2.6251 0.7880 6 1 3.5887 1.4160 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4699 -2.1262 0.1064 9 6 3.5040 -1.1982 -0.1501 10 6 4.2978 -1.1983 1.1580 11 7 3.6378 -2.0738 2.1295 12 6 2.7113 -1.5141 3.1091 13 6 3.4787 -0.9478 4.3174 14 6 3.3695 -1.9851 5.4600 15 6 4.7422 -2.6236 5.6650 16 6 5.2368 -3.3898 4.4607 17 6 4.3895 -4.6363 4.1928 18 6 3.2745 -4.2540 3.2079 19 6 3.8828 -3.3962 2.1221 20 8 4.5790 -3.8908 1.2610 21 6 4.0941 -1.9662 -1.3345 22 6 4.0978 -0.4362 -1.3367 23 1 -0.4851 0.8400 0.0004 24 1 4.3438 -0.1842 1.5550 25 1 5.3083 -1.5610 0.9697 26 1 2.1345 -0.7152 2.6429 27 1 2.0319 -2.2958 3.4491 28 1 4.5252 -0.7955 4.0536 29 1 3.0331 -0.0034 4.6301 30 1 3.0551 -1.4884 6.3779 31 1 2.6436 -2.7525 5.1909 32 1 5.4611 -1.8382 5.8982 33 1 4.6868 -3.3054 6.5136 34 1 5.1993 -2.7399 3.5864 35 1 6.2697 -3.6928 4.6321 36 1 3.9506 -4.9912 5.1254 37 1 5.0123 -5.4179 3.7579 38 1 2.4987 -3.6932 3.7293 39 1 2.8457 -5.1548 2.7690 40 1 5.0478 -2.4716 -1.1819 41 1 3.3977 -2.4690 -2.0056 42 1 3.4037 0.0678 -2.0093 43 1 5.0538 0.0650 -1.1854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403961549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:45 Heat of formation + Delta-G solvation = -10.365109 kcal Electronic energy + Delta-G solvation = -22211.969676 eV Core-core repulsion = 19257.961104 eV Total energy + Delta-G solvation = -2954.008571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08935 -37.01259 -36.53683 -34.52410 -32.46793 -32.07680 -29.87323 -26.67095 -26.28256 -25.33760 -22.86816 -22.20538 -21.48368 -19.96473 -19.05546 -18.01237 -16.85049 -16.27852 -15.81572 -15.11854 -14.72739 -14.57467 -14.31211 -14.00180 -13.38342 -13.11553 -12.87520 -12.72262 -12.45768 -12.33366 -11.89643 -11.77733 -11.66772 -11.38122 -11.11191 -10.99377 -10.77345 -10.52283 -10.49959 -10.37299 -10.18332 -10.11233 -9.99032 -9.65639 -9.03265 -8.88338 -8.64539 -8.33035 -7.75820 -6.10626 -4.09718 3.26000 3.33422 3.36464 3.39290 3.77945 4.40896 4.75419 4.88153 4.96412 5.02840 5.06735 5.19546 5.23177 5.38864 5.43067 5.57537 5.64029 5.67722 5.85793 5.90948 5.94668 6.03220 6.09758 6.11530 6.16135 6.22261 6.24332 6.25867 6.31441 6.36664 6.44549 6.50489 6.53908 6.60557 6.71862 6.89178 7.08783 7.25881 7.36360 7.79042 8.20919 8.55504 8.94073 8.94551 9.53345 11.01159 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.008030 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.017828 B = 3486.004900 C = 4014.926000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.259 1.259 7 C -0.468 4.468 8 H 0.073 0.927 9 C -0.013 4.013 10 C 0.149 3.851 11 N -0.575 5.575 12 C 0.105 3.895 13 C -0.145 4.145 14 C -0.124 4.124 15 C -0.112 4.112 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.155 4.155 19 C 0.523 3.477 20 O -0.552 6.552 21 C -0.167 4.167 22 C -0.206 4.206 23 H 0.263 0.737 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -3.017 11.722 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.126 4.126 3 Si 0.705 3.295 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.506 4.506 8 H 0.091 0.909 9 C -0.015 4.015 10 C 0.026 3.974 11 N -0.304 5.304 12 C -0.018 4.018 13 C -0.184 4.184 14 C -0.161 4.161 15 C -0.150 4.150 16 C -0.174 4.174 17 C -0.141 4.141 18 C -0.195 4.195 19 C 0.311 3.689 20 O -0.431 6.431 21 C -0.204 4.204 22 C -0.244 4.244 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.569 -3.143 11.268 13.933 hybrid contribution 0.235 1.104 -0.135 1.137 sum 7.804 -2.039 11.133 13.748 Atomic orbital electron populations 1.69916 1.06237 1.26852 1.50714 1.24958 0.94489 0.98702 0.94474 0.86923 0.80580 0.83710 0.78297 1.20735 1.22319 1.18370 1.20136 0.86766 0.94186 1.49491 0.90876 1.19808 0.95721 0.99798 0.86176 1.21173 0.94090 0.92566 0.89564 1.47433 1.44102 1.06651 1.32203 1.21994 0.91292 1.00145 0.88413 1.22740 1.01596 0.98389 0.95662 1.22143 0.97225 0.98289 0.98490 1.21160 0.97067 0.99128 0.97642 1.21522 0.98943 0.97223 0.99741 1.21530 0.96534 0.97750 0.98261 1.22341 0.99735 1.00629 0.96809 1.20289 0.80811 0.82457 0.85345 1.90643 1.40535 1.73125 1.38797 1.22779 1.01126 0.92301 1.04234 1.22936 1.01016 0.95083 1.05353 0.92737 0.91448 0.92512 0.89012 0.90191 0.91092 0.91297 0.92114 0.91217 0.92641 0.92843 0.90413 0.92479 0.91276 0.91465 0.88997 0.89386 0.90662 0.90138 0.89667 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.96 55.43 0.77 -25.44 16 2 C 0.08 2.05 5.33 -17.82 -0.09 1.96 16 3 Si 0.88 20.91 24.95 -169.99 -4.24 16.67 16 4 H -0.28 -6.80 7.10 56.52 0.40 -6.40 16 5 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -5.78 5.50 56.52 0.31 -5.47 16 7 C -0.47 -12.55 7.69 -34.44 -0.26 -12.82 16 8 H 0.07 2.22 8.06 -52.49 -0.42 1.79 16 9 C -0.01 -0.31 1.20 -155.66 -0.19 -0.50 16 10 C 0.15 3.08 5.33 -4.04 -0.02 3.05 16 11 N -0.57 -10.86 1.20 -173.40 -0.21 -11.07 16 12 C 0.11 1.76 5.09 -3.83 -0.02 1.74 16 13 C -0.15 -1.92 5.70 -25.34 -0.14 -2.07 16 14 C -0.12 -1.36 5.62 -25.95 -0.15 -1.51 16 15 C -0.11 -1.20 4.90 -27.82 -0.14 -1.34 16 16 C -0.14 -1.71 5.25 -27.66 -0.15 -1.86 16 17 C -0.10 -1.26 5.78 -26.38 -0.15 -1.42 16 18 C -0.16 -2.28 5.54 -27.34 -0.15 -2.43 16 19 C 0.52 9.95 4.90 -10.89 -0.05 9.90 16 20 O -0.55 -12.44 16.91 5.56 0.09 -12.35 16 21 C -0.17 -3.76 9.88 -26.73 -0.26 -4.03 16 22 C -0.21 -4.55 7.50 -26.73 -0.20 -4.75 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.07 1.35 6.54 -51.93 -0.34 1.01 16 25 H 0.06 1.16 7.50 -51.93 -0.39 0.77 16 26 H 0.09 1.81 7.26 -51.93 -0.38 1.43 16 27 H 0.08 1.24 4.71 -51.92 -0.24 0.99 16 28 H 0.07 0.98 6.80 -51.93 -0.35 0.62 16 29 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.76 5.00 -51.93 -0.26 0.50 16 32 H 0.05 0.58 8.13 -51.93 -0.42 0.15 16 33 H 0.05 0.50 8.04 -51.93 -0.42 0.09 16 34 H 0.08 1.18 3.79 -51.93 -0.20 0.98 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.23 3.42 -51.93 -0.18 1.05 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.63 8.08 -51.93 -0.42 1.21 16 41 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.08 1.98 6.93 -51.93 -0.36 1.62 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -30.29 313.81 -7.80 -38.09 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.97 Total: 5.43 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.98 Total: -16.06 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.57 Total: -36.51 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.24 Total: 16.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.29 -7.80 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403961549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.726 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds