Wall clock time and date at job start Mon Mar 30 2020 07:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99574 * 2 1 4 4 H 1.48494 * 109.47320 * 274.24523 * 3 2 1 5 5 H 1.48502 * 109.47437 * 34.25114 * 3 2 1 6 6 H 1.48509 * 109.46844 * 154.24535 * 3 2 1 7 7 C 1.37872 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99803 * 353.41124 * 7 2 1 9 9 C 1.50695 * 120.00017 * 173.41948 * 7 2 1 10 10 C 1.53004 * 115.55384 * 93.18539 * 9 7 2 11 11 N 1.46497 * 109.46822 * 39.51357 * 10 9 7 12 12 C 1.45988 * 120.11757 * 264.57161 * 11 10 9 13 13 C 1.53936 * 110.56905 * 277.10737 * 12 11 10 14 14 C 1.54710 * 107.33014 * 258.47083 * 13 12 11 15 15 C 1.52775 * 108.41587 * 109.70387 * 14 13 12 16 16 C 1.51064 * 113.52959 * 297.22379 * 15 14 13 17 17 C 1.53078 * 111.79254 * 292.71051 * 16 15 14 18 18 C 1.53606 * 108.13857 * 92.05723 * 17 16 15 19 19 C 1.34489 * 120.12648 * 84.55138 * 11 10 9 20 20 O 1.21279 * 120.63362 * 355.07448 * 19 11 10 21 21 C 1.53002 * 117.51704 * 238.88994 * 9 7 2 22 22 C 1.53003 * 60.00269 * 107.47872 * 21 9 7 23 23 H 0.97003 * 120.00403 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46832 * 279.51027 * 10 9 7 25 25 H 1.09001 * 109.47056 * 159.50924 * 10 9 7 26 26 H 1.09002 * 109.25980 * 37.39391 * 12 11 10 27 27 H 1.09009 * 109.25901 * 156.82974 * 12 11 10 28 28 H 1.08996 * 109.88433 * 17.92711 * 13 12 11 29 29 H 1.09007 * 109.88514 * 139.01286 * 13 12 11 30 30 H 1.09000 * 109.68123 * 229.43648 * 14 13 12 31 31 H 1.09007 * 109.67397 * 349.93643 * 14 13 12 32 32 H 1.08996 * 108.67231 * 58.26913 * 15 14 13 33 33 H 1.09004 * 108.67785 * 176.17992 * 15 14 13 34 34 H 1.09004 * 109.01288 * 53.32440 * 16 15 14 35 35 H 1.08996 * 109.01534 * 172.12568 * 16 15 14 36 36 H 1.09004 * 109.77452 * 332.38993 * 17 16 15 37 37 H 1.08996 * 109.72302 * 211.70365 * 17 16 15 38 38 H 1.09000 * 109.75648 * 283.83741 * 18 17 16 39 39 H 1.09002 * 109.75890 * 163.14142 * 18 17 16 40 40 H 1.09002 * 117.49946 * 214.97217 * 21 9 7 41 41 H 1.08998 * 117.49775 * 359.97438 * 21 9 7 42 42 H 1.08998 * 117.49819 * 252.51081 * 22 21 9 43 43 H 1.08996 * 117.49690 * 107.49155 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4068 2.0983 -1.3962 5 1 1.4943 2.6251 0.7880 6 1 3.5887 1.4160 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4699 -2.1262 0.1064 9 6 3.5040 -1.1982 -0.1501 10 6 4.2978 -1.1983 1.1580 11 7 3.6378 -2.0738 2.1295 12 6 2.7113 -1.5141 3.1091 13 6 3.4787 -0.9478 4.3174 14 6 3.3695 -1.9851 5.4600 15 6 4.7422 -2.6236 5.6650 16 6 5.2368 -3.3898 4.4607 17 6 4.3895 -4.6363 4.1928 18 6 3.2745 -4.2540 3.2079 19 6 3.8828 -3.3962 2.1221 20 8 4.5790 -3.8908 1.2610 21 6 4.0941 -1.9662 -1.3345 22 6 4.0978 -0.4362 -1.3367 23 1 -0.4851 0.8400 0.0004 24 1 4.3438 -0.1842 1.5550 25 1 5.3083 -1.5610 0.9697 26 1 2.1345 -0.7152 2.6429 27 1 2.0319 -2.2958 3.4491 28 1 4.5252 -0.7955 4.0536 29 1 3.0331 -0.0034 4.6301 30 1 3.0551 -1.4884 6.3779 31 1 2.6436 -2.7525 5.1909 32 1 5.4611 -1.8382 5.8982 33 1 4.6868 -3.3054 6.5136 34 1 5.1993 -2.7399 3.5864 35 1 6.2697 -3.6928 4.6321 36 1 3.9506 -4.9912 5.1254 37 1 5.0123 -5.4179 3.7579 38 1 2.4987 -3.6932 3.7293 39 1 2.8457 -5.1548 2.7690 40 1 5.0478 -2.4716 -1.1819 41 1 3.3977 -2.4690 -2.0056 42 1 3.4037 0.0678 -2.0093 43 1 5.0538 0.0650 -1.1854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403961549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:44 Heat of formation + Delta-G solvation = -27.122561 kcal Electronic energy + Delta-G solvation = -22212.696333 eV Core-core repulsion = 19257.961104 eV Total energy + Delta-G solvation = -2954.735229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48762 -38.68383 -37.87511 -35.89243 -34.20718 -33.62137 -31.11621 -28.28059 -27.53600 -27.18996 -24.07808 -23.38308 -23.26191 -21.25941 -20.60546 -19.49112 -18.34174 -18.01698 -17.19860 -16.79138 -16.34639 -15.84105 -15.58436 -15.29411 -14.92430 -14.75626 -14.47070 -14.18556 -13.94774 -13.62129 -13.35556 -13.10969 -12.94849 -12.81369 -12.46616 -12.44656 -12.22373 -12.08969 -11.97454 -11.82282 -11.62409 -11.40521 -11.11452 -11.03550 -10.86589 -10.73675 -10.47873 -10.17722 -9.31474 -8.24909 -6.28399 1.35651 1.39831 1.51032 1.85849 2.32687 2.39947 3.07852 3.22975 3.67347 3.83389 3.92504 4.05247 4.10813 4.18749 4.29765 4.35798 4.38289 4.44561 4.48749 4.56841 4.62953 4.67260 4.78017 4.81622 4.88621 4.97145 5.04319 5.05016 5.11689 5.15787 5.18898 5.27973 5.33417 5.35660 5.41904 5.44140 5.52879 5.62993 5.74524 5.83123 6.36829 6.71233 6.78289 7.37588 7.44468 8.90514 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.008030 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.017828 B = 3486.004900 C = 4014.926000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.230 1.230 7 C -0.461 4.461 8 H 0.021 0.979 9 C -0.031 4.031 10 C 0.154 3.846 11 N -0.577 5.577 12 C 0.104 3.896 13 C -0.136 4.136 14 C -0.120 4.120 15 C -0.108 4.108 16 C -0.137 4.137 17 C -0.096 4.096 18 C -0.151 4.151 19 C 0.515 3.485 20 O -0.595 6.595 21 C -0.167 4.167 22 C -0.192 4.192 23 H 0.264 0.736 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -2.232 13.947 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.167 4.167 3 Si 0.758 3.242 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.153 1.153 7 C -0.498 4.498 8 H 0.039 0.961 9 C -0.032 4.032 10 C 0.030 3.970 11 N -0.305 5.305 12 C -0.018 4.018 13 C -0.175 4.175 14 C -0.157 4.157 15 C -0.145 4.145 16 C -0.175 4.175 17 C -0.134 4.134 18 C -0.191 4.191 19 C 0.305 3.695 20 O -0.477 6.477 21 C -0.205 4.205 22 C -0.229 4.229 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.248 -2.361 13.517 16.548 hybrid contribution -0.362 0.764 -0.890 1.228 sum 8.886 -1.596 12.628 15.523 Atomic orbital electron populations 1.70049 1.08114 1.27814 1.52508 1.25641 0.95010 1.02086 0.93981 0.86015 0.80679 0.79168 0.78381 1.20727 1.22169 1.15304 1.20027 0.88638 0.92172 1.49010 0.96052 1.19844 0.94009 1.01364 0.88008 1.21038 0.93854 0.93553 0.88513 1.47546 1.44058 1.06762 1.32175 1.22097 0.91419 0.99294 0.89027 1.22665 1.00677 0.99452 0.94699 1.22131 0.97647 0.97720 0.98234 1.21117 0.96702 0.99462 0.97251 1.21518 0.99519 0.96912 0.99510 1.21547 0.95562 0.97605 0.98667 1.22395 1.00790 0.99819 0.96061 1.21045 0.80144 0.82639 0.85659 1.90606 1.42552 1.73833 1.40678 1.22704 1.01111 0.93084 1.03581 1.22979 1.01925 0.94476 1.03546 0.92677 0.90454 0.92171 0.92499 0.89400 0.91429 0.90321 0.89995 0.91160 0.92145 0.90699 0.93168 0.91937 0.88150 0.92129 0.87673 0.89456 0.89574 0.91889 0.90850 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.75 13.96 21.45 0.30 -56.45 16 2 C 0.03 1.68 5.33 84.65 0.45 2.13 16 3 Si 0.93 42.56 24.95 68.60 1.71 44.27 16 4 H -0.28 -12.85 7.10 99.48 0.71 -12.14 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.23 -9.35 5.50 99.48 0.55 -8.80 16 7 C -0.46 -25.47 7.69 25.60 0.20 -25.27 16 8 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 9 C -0.03 -1.42 1.20 -52.92 -0.06 -1.49 16 10 C 0.15 6.23 5.33 86.38 0.46 6.69 16 11 N -0.58 -21.74 1.20 -821.07 -0.98 -22.72 16 12 C 0.10 3.44 5.09 86.79 0.44 3.88 16 13 C -0.14 -3.31 5.70 31.49 0.18 -3.13 16 14 C -0.12 -2.22 5.62 31.10 0.17 -2.05 16 15 C -0.11 -1.90 4.90 29.89 0.15 -1.75 16 16 C -0.14 -3.10 5.25 29.99 0.16 -2.94 16 17 C -0.10 -2.14 5.78 30.82 0.18 -1.96 16 18 C -0.15 -4.30 5.54 30.20 0.17 -4.13 16 19 C 0.51 19.66 4.90 87.85 0.43 20.09 16 20 O -0.59 -27.21 16.91 -3.03 -0.05 -27.26 16 21 C -0.17 -7.56 9.88 30.60 0.30 -7.25 16 22 C -0.19 -8.15 7.50 30.60 0.23 -7.92 16 23 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 24 H 0.08 2.93 6.54 -2.39 -0.02 2.91 16 25 H 0.06 2.39 7.50 -2.39 -0.02 2.37 16 26 H 0.06 2.27 7.26 -2.39 -0.02 2.25 16 27 H 0.09 2.68 4.71 -2.38 -0.01 2.67 16 28 H 0.07 1.71 6.80 -2.39 -0.02 1.69 16 29 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.31 5.00 -2.38 -0.01 1.30 16 32 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.07 1.05 8.04 -2.39 -0.02 1.03 16 34 H 0.05 1.44 3.79 -2.39 -0.01 1.43 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.63 7.83 -2.38 -0.02 1.61 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.11 2.66 3.42 -2.39 -0.01 2.65 16 39 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.09 3.69 8.08 -2.39 -0.02 3.67 16 41 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.07 3.31 6.93 -2.39 -0.02 3.29 16 43 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 Total: -1.00 -67.83 313.81 5.26 -62.58 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.83 Total: 24.67 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.45 Total: -25.09 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -0.68 Total: -79.17 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.71 Total: 44.27 kcal Total: -67.83 5.26 -62.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403961549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.454 kcal (2) G-P(sol) polarization free energy of solvation -67.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds