Wall clock time and date at job start Mon Mar 30 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48503 * 109.47024 * 269.99810 * 3 2 1 5 5 H 1.48502 * 109.47294 * 30.00097 * 3 2 1 6 6 H 1.48498 * 109.47164 * 150.00140 * 3 2 1 7 7 C 1.37873 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99927 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00009 * 179.97438 * 7 2 1 10 10 H 1.09003 * 110.67113 * 61.78178 * 9 7 2 11 11 C 1.54889 * 110.75699 * 298.54624 * 9 7 2 12 12 C 1.54269 * 104.19521 * 203.74348 * 11 9 7 13 13 C 1.53871 * 106.60080 * 23.60828 * 12 11 9 14 14 H 1.08993 * 110.03494 * 240.66550 * 13 12 11 15 15 N 1.46499 * 110.03036 * 119.28565 * 13 12 11 16 16 C 1.34775 * 120.00438 * 87.09225 * 15 13 12 17 17 O 1.21289 * 119.99443 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00283 * 179.97438 * 16 15 13 19 19 C 1.53002 * 109.47020 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47225 * 179.97438 * 19 18 16 21 21 C 1.53782 * 113.61734 * 185.00086 * 20 19 18 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 19 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 C 1.54266 * 106.63812 * 359.97438 * 13 12 11 25 25 H 0.97003 * 120.00502 * 359.97438 * 1 2 3 26 26 H 1.09008 * 110.48717 * 85.06665 * 11 9 7 27 27 H 1.08997 * 110.60085 * 322.47375 * 11 9 7 28 28 H 1.09004 * 110.02926 * 264.32159 * 12 11 9 29 29 H 1.08999 * 110.07257 * 142.92413 * 12 11 9 30 30 H 0.97002 * 119.99977 * 267.09468 * 15 13 12 31 31 H 1.08993 * 109.47112 * 60.00258 * 18 16 15 32 32 H 1.08993 * 109.47019 * 300.00197 * 18 16 15 33 33 H 1.09005 * 109.46667 * 60.00486 * 19 18 16 34 34 H 1.08998 * 109.47226 * 300.00423 * 19 18 16 35 35 H 1.08997 * 112.90864 * 316.25931 * 20 19 18 36 36 H 1.09001 * 113.61250 * 105.47049 * 21 20 19 37 37 H 1.08997 * 113.61225 * 334.56890 * 21 20 19 38 38 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 39 39 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 40 40 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 41 41 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 42 42 H 1.09005 * 110.48228 * 95.08843 * 24 13 12 43 43 H 1.08999 * 110.48459 * 217.73262 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 1 3.8966 -0.7119 0.8975 11 6 4.0599 -0.5015 -1.2735 12 6 5.4741 -1.0932 -1.4464 13 6 5.4745 -2.4504 -0.7216 14 1 6.2148 -2.4464 0.0783 15 7 5.7683 -3.5265 -1.6713 16 6 7.0466 -3.8643 -1.9326 17 8 7.9537 -3.2778 -1.3810 18 6 7.3488 -4.9716 -2.9091 19 6 8.8639 -5.1515 -3.0233 20 6 9.1708 -6.2760 -4.0142 21 6 10.6663 -6.6207 -4.1112 22 6 10.4541 -6.7660 -5.6273 23 6 9.2649 -5.8027 -5.4763 24 6 4.0610 -2.6369 -0.1323 25 1 -0.4851 0.8400 0.0004 26 1 4.1130 0.5775 -1.1278 27 1 3.4389 -0.7388 -2.1372 28 1 6.2137 -0.4300 -0.9978 29 1 5.6934 -1.2349 -2.5047 30 1 5.0428 -3.9958 -2.1121 31 1 6.9390 -4.7162 -3.8863 32 1 6.8979 -5.8994 -2.5573 33 1 9.2741 -5.4068 -2.0462 34 1 9.3145 -4.2235 -3.3753 35 1 8.5298 -7.1472 -3.8792 36 1 10.9321 -7.5546 -3.6159 37 1 11.3233 -5.7945 -3.8395 38 1 11.2715 -6.3605 -6.2235 39 1 10.1653 -7.7716 -5.9334 40 1 9.5380 -4.7525 -5.5785 41 1 8.4010 -6.0773 -6.0815 42 1 3.4391 -3.2214 -0.8105 43 1 4.1154 -3.1157 0.8453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452560355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:08 Heat of formation + Delta-G solvation = -47.583094 kcal Electronic energy + Delta-G solvation = -19896.939173 eV Core-core repulsion = 16941.316709 eV Total energy + Delta-G solvation = -2955.622464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.88268 -38.97037 -37.30593 -33.70750 -32.86859 -32.01530 -28.56733 -27.95955 -26.25725 -25.77739 -23.60275 -22.28853 -20.42513 -19.76828 -19.68232 -19.16621 -16.90132 -16.86543 -15.97340 -15.70591 -15.27325 -15.07678 -14.64976 -14.26770 -13.63926 -13.32756 -12.97029 -12.78641 -12.69707 -12.55426 -12.39357 -12.24459 -11.66731 -11.53753 -11.18117 -11.08060 -10.97033 -10.80722 -10.48743 -10.46356 -10.33149 -10.13226 -9.98497 -9.78474 -9.52470 -9.44951 -9.03385 -8.70419 -8.54397 -6.08681 -4.07863 2.82155 3.29132 3.38590 3.40810 3.42633 4.32886 4.38889 4.41733 4.47853 4.59807 4.82976 4.99950 5.12416 5.20427 5.29602 5.35332 5.43966 5.45945 5.50266 5.53726 5.55902 5.59060 5.64408 5.67157 5.87881 6.05115 6.10944 6.12101 6.15030 6.30162 6.30652 6.42623 6.48948 6.57001 6.69306 6.83491 7.02229 7.08250 7.50733 7.73594 7.77987 8.44039 8.50698 8.94300 9.54508 11.04495 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.047659 B = 0.003150 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.366909 B = 8887.755011 C = 8955.431561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.015 3.985 10 H 0.034 0.966 11 C -0.130 4.130 12 C -0.130 4.130 13 C 0.136 3.864 14 H 0.082 0.918 15 N -0.721 5.721 16 C 0.507 3.493 17 O -0.549 6.549 18 C -0.140 4.140 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.110 4.110 25 H 0.263 0.737 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.213 -12.397 -9.584 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.092 0.908 9 C -0.004 4.004 10 H 0.053 0.947 11 C -0.168 4.168 12 C -0.169 4.169 13 C 0.032 3.968 14 H 0.100 0.900 15 N -0.371 5.371 16 C 0.293 3.707 17 O -0.427 6.427 18 C -0.180 4.180 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.175 4.175 22 C -0.182 4.182 23 C -0.177 4.177 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.702 -11.857 -9.177 23.198 hybrid contribution -0.088 0.781 -0.323 0.850 sum 17.614 -11.075 -9.499 22.873 Atomic orbital electron populations 1.69901 1.06301 1.26946 1.50930 1.24991 0.94643 0.99047 0.94398 0.86896 0.79969 0.83637 0.78324 1.20469 1.22285 1.18945 1.20970 0.88568 0.94413 1.50867 0.90840 1.20069 0.96508 0.90689 0.93177 0.94748 1.22822 0.93936 0.98635 1.01442 1.22545 0.98640 0.96099 0.99583 1.21825 0.98432 0.85811 0.90722 0.89982 1.46361 1.07403 1.37810 1.45546 1.20748 0.82891 0.84327 0.82726 1.90678 1.45268 1.54770 1.51957 1.21683 0.98890 0.98013 0.99434 1.21310 0.93759 0.98317 0.99673 1.22630 0.96854 0.98560 0.94977 1.22935 0.96598 1.01703 0.96297 1.22812 0.98750 0.99846 0.96781 1.23038 0.98470 0.99628 0.96543 1.22582 0.92304 1.00206 0.99687 0.92683 0.93599 0.91488 0.92347 0.92543 0.76668 0.89105 0.89149 0.91170 0.91165 0.89273 0.91658 0.90041 0.91683 0.90390 0.90052 0.91600 0.91378 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.76 24.46 -169.99 -4.16 17.60 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.28 6.48 56.52 0.37 -5.91 16 7 C -0.51 -13.92 9.13 -34.45 -0.31 -14.24 16 8 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 9 C 0.01 0.34 2.30 -89.74 -0.21 0.13 16 10 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 11 C -0.13 -2.75 5.07 -25.07 -0.13 -2.87 16 12 C -0.13 -2.35 6.59 -25.61 -0.17 -2.51 16 13 C 0.14 2.31 3.23 -66.81 -0.22 2.10 16 14 H 0.08 1.48 7.59 -51.93 -0.39 1.08 16 15 N -0.72 -10.07 4.99 -52.73 -0.26 -10.33 16 16 C 0.51 7.12 7.82 -10.99 -0.09 7.04 16 17 O -0.55 -9.86 15.65 5.55 0.09 -9.77 16 18 C -0.14 -1.36 5.69 -27.88 -0.16 -1.52 16 19 C -0.09 -0.91 4.34 -26.73 -0.12 -1.03 16 20 C -0.11 -0.87 3.65 -89.71 -0.33 -1.20 16 21 C -0.14 -1.02 7.65 -25.92 -0.20 -1.22 16 22 C -0.14 -0.99 8.08 -25.92 -0.21 -1.20 16 23 C -0.14 -1.03 7.65 -25.82 -0.20 -1.23 16 24 C -0.11 -2.05 5.95 -25.03 -0.15 -2.20 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.05 1.00 4.91 -51.92 -0.25 0.74 16 27 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 30 H 0.40 4.61 8.35 -40.82 -0.34 4.27 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.07 0.78 7.81 -51.93 -0.41 0.37 16 35 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.64 7.90 -51.93 -0.41 0.23 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 1.24 7.63 -51.93 -0.40 0.84 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -31.23 335.66 -8.72 -39.96 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.65 Total: 2.06 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.57 Total: -18.03 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.51 Total: -36.87 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.16 Total: 17.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.23 -8.72 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452560355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.626 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds