Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48503 * 109.47024 * 269.99810 * 3 2 1 5 5 H 1.48502 * 109.47294 * 30.00097 * 3 2 1 6 6 H 1.48498 * 109.47164 * 150.00140 * 3 2 1 7 7 C 1.37873 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99927 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00009 * 179.97438 * 7 2 1 10 10 H 1.09003 * 110.67113 * 61.78178 * 9 7 2 11 11 C 1.54889 * 110.75699 * 298.54624 * 9 7 2 12 12 C 1.54269 * 104.19521 * 203.74348 * 11 9 7 13 13 C 1.53871 * 106.60080 * 23.60828 * 12 11 9 14 14 H 1.08993 * 110.03494 * 240.66550 * 13 12 11 15 15 N 1.46499 * 110.03036 * 119.28565 * 13 12 11 16 16 C 1.34775 * 120.00438 * 87.09225 * 15 13 12 17 17 O 1.21289 * 119.99443 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00283 * 179.97438 * 16 15 13 19 19 C 1.53002 * 109.47020 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47225 * 179.97438 * 19 18 16 21 21 C 1.53782 * 113.61734 * 185.00086 * 20 19 18 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 19 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 C 1.54266 * 106.63812 * 359.97438 * 13 12 11 25 25 H 0.97003 * 120.00502 * 359.97438 * 1 2 3 26 26 H 1.09008 * 110.48717 * 85.06665 * 11 9 7 27 27 H 1.08997 * 110.60085 * 322.47375 * 11 9 7 28 28 H 1.09004 * 110.02926 * 264.32159 * 12 11 9 29 29 H 1.08999 * 110.07257 * 142.92413 * 12 11 9 30 30 H 0.97002 * 119.99977 * 267.09468 * 15 13 12 31 31 H 1.08993 * 109.47112 * 60.00258 * 18 16 15 32 32 H 1.08993 * 109.47019 * 300.00197 * 18 16 15 33 33 H 1.09005 * 109.46667 * 60.00486 * 19 18 16 34 34 H 1.08998 * 109.47226 * 300.00423 * 19 18 16 35 35 H 1.08997 * 112.90864 * 316.25931 * 20 19 18 36 36 H 1.09001 * 113.61250 * 105.47049 * 21 20 19 37 37 H 1.08997 * 113.61225 * 334.56890 * 21 20 19 38 38 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 39 39 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 40 40 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 41 41 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 42 42 H 1.09005 * 110.48228 * 95.08843 * 24 13 12 43 43 H 1.08999 * 110.48459 * 217.73262 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 1 3.8966 -0.7119 0.8975 11 6 4.0599 -0.5015 -1.2735 12 6 5.4741 -1.0932 -1.4464 13 6 5.4745 -2.4504 -0.7216 14 1 6.2148 -2.4464 0.0783 15 7 5.7683 -3.5265 -1.6713 16 6 7.0466 -3.8643 -1.9326 17 8 7.9537 -3.2778 -1.3810 18 6 7.3488 -4.9716 -2.9091 19 6 8.8639 -5.1515 -3.0233 20 6 9.1708 -6.2760 -4.0142 21 6 10.6663 -6.6207 -4.1112 22 6 10.4541 -6.7660 -5.6273 23 6 9.2649 -5.8027 -5.4763 24 6 4.0610 -2.6369 -0.1323 25 1 -0.4851 0.8400 0.0004 26 1 4.1130 0.5775 -1.1278 27 1 3.4389 -0.7388 -2.1372 28 1 6.2137 -0.4300 -0.9978 29 1 5.6934 -1.2349 -2.5047 30 1 5.0428 -3.9958 -2.1121 31 1 6.9390 -4.7162 -3.8863 32 1 6.8979 -5.8994 -2.5573 33 1 9.2741 -5.4068 -2.0462 34 1 9.3145 -4.2235 -3.3753 35 1 8.5298 -7.1472 -3.8792 36 1 10.9321 -7.5546 -3.6159 37 1 11.3233 -5.7945 -3.8395 38 1 11.2715 -6.3605 -6.2235 39 1 10.1653 -7.7716 -5.9334 40 1 9.5380 -4.7525 -5.5785 41 1 8.4010 -6.0773 -6.0815 42 1 3.4391 -3.2214 -0.8105 43 1 4.1154 -3.1157 0.8453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452560355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = -66.361523 kcal Electronic energy + Delta-G solvation = -19897.753467 eV Core-core repulsion = 16941.316709 eV Total energy + Delta-G solvation = -2956.436758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00766 -39.70442 -38.75903 -35.27025 -34.09975 -33.51036 -30.27744 -29.38354 -27.18813 -26.38224 -25.37876 -23.12595 -21.67890 -21.19535 -20.78320 -20.23114 -18.83805 -17.94696 -17.06074 -16.91117 -16.58759 -16.08513 -15.96700 -15.47018 -14.85524 -14.75255 -14.39972 -14.10153 -14.09879 -13.63727 -13.34927 -13.26818 -12.86961 -12.85747 -12.56938 -12.33078 -12.23090 -11.86403 -11.83087 -11.63738 -11.54024 -11.38503 -11.26206 -11.11643 -11.04555 -10.94580 -10.69941 -10.64562 -9.96792 -8.28451 -6.30975 1.32806 1.37031 1.46624 1.73121 2.32117 2.34472 3.07457 3.69853 3.72823 3.80667 3.86375 3.88440 4.03178 4.04596 4.08356 4.31422 4.43059 4.60178 4.64182 4.70251 4.72330 4.79568 4.89348 4.89915 4.93526 4.93961 4.95391 4.97410 5.07709 5.10598 5.12733 5.22160 5.25539 5.35912 5.39937 5.47742 5.62754 5.68093 5.71425 5.78335 6.32644 6.67563 6.75626 7.34656 7.36031 8.88102 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.047659 B = 0.003150 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.366909 B = 8887.755011 C = 8955.431561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.509 4.509 8 H 0.040 0.960 9 C 0.006 3.994 10 H 0.029 0.971 11 C -0.127 4.127 12 C -0.122 4.122 13 C 0.147 3.853 14 H 0.075 0.925 15 N -0.714 5.714 16 C 0.504 3.496 17 O -0.591 6.591 18 C -0.130 4.130 19 C -0.089 4.089 20 C -0.107 4.107 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.100 4.100 25 H 0.264 0.736 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.413 0.587 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.805 -13.265 -10.838 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.226 1.226 6 H -0.173 1.173 7 C -0.547 4.547 8 H 0.058 0.942 9 C -0.014 4.014 10 H 0.047 0.953 11 C -0.165 4.165 12 C -0.160 4.160 13 C 0.042 3.958 14 H 0.093 0.907 15 N -0.365 5.365 16 C 0.293 3.707 17 O -0.471 6.471 18 C -0.170 4.170 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.180 4.180 22 C -0.179 4.179 23 C -0.178 4.178 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.250 0.750 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.300 -12.757 -10.451 25.386 hybrid contribution -0.613 0.974 0.095 1.155 sum 18.687 -11.783 -10.356 24.398 Atomic orbital electron populations 1.70039 1.08084 1.27876 1.53094 1.25796 0.95298 1.02728 0.94442 0.85960 0.79157 0.79261 0.78977 1.19259 1.22564 1.17325 1.21275 0.91083 0.92985 1.49369 0.94209 1.20052 0.93559 0.93837 0.93905 0.95303 1.22682 0.95609 0.98246 0.99924 1.22470 0.96525 0.96412 1.00622 1.21478 0.96860 0.86411 0.91091 0.90718 1.46233 1.08204 1.37113 1.44968 1.21506 0.82022 0.84577 0.82589 1.90667 1.46407 1.56391 1.53661 1.21716 0.98885 0.97252 0.99138 1.21251 0.93786 0.98314 0.99373 1.22625 0.97225 0.98180 0.94520 1.22963 0.96362 1.01683 0.97031 1.22821 0.98572 1.00269 0.96195 1.23039 0.99079 0.99360 0.96310 1.22436 0.93240 0.97690 1.00470 0.92655 0.94117 0.92207 0.92052 0.91208 0.75009 0.86950 0.86556 0.92733 0.92942 0.87885 0.91102 0.90901 0.91548 0.89363 0.90836 0.90698 0.90978 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 2 C 0.01 0.82 5.46 84.65 0.46 1.28 16 3 Si 0.94 44.68 24.46 68.60 1.68 46.36 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.25 -11.12 6.48 99.48 0.64 -10.48 16 7 C -0.51 -28.10 9.13 25.60 0.23 -27.87 16 8 H 0.04 2.40 8.03 -2.91 -0.02 2.38 16 9 C 0.01 0.25 2.30 -10.23 -0.02 0.23 16 10 H 0.03 1.33 7.37 -2.39 -0.02 1.31 16 11 C -0.13 -5.12 5.07 31.67 0.16 -4.96 16 12 C -0.12 -4.11 6.59 31.32 0.21 -3.90 16 13 C 0.15 4.70 3.23 45.71 0.15 4.85 16 14 H 0.07 2.56 7.59 -2.39 -0.02 2.54 16 15 N -0.71 -18.11 4.99 -439.11 -2.19 -20.30 16 16 C 0.50 13.05 7.82 87.66 0.69 13.73 16 17 O -0.59 -20.50 15.65 -3.06 -0.05 -20.55 16 18 C -0.13 -2.13 5.69 29.85 0.17 -1.96 16 19 C -0.09 -1.60 4.34 30.59 0.13 -1.47 16 20 C -0.11 -1.41 3.65 -10.21 -0.04 -1.45 16 21 C -0.14 -1.89 7.65 31.12 0.24 -1.65 16 22 C -0.14 -1.62 8.08 31.12 0.25 -1.37 16 23 C -0.14 -1.76 7.65 31.18 0.24 -1.52 16 24 C -0.10 -3.61 5.95 31.69 0.19 -3.42 16 25 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.04 1.68 4.91 -2.38 -0.01 1.66 16 27 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 2.18 7.92 -2.39 -0.02 2.16 16 30 H 0.41 8.27 8.35 -92.71 -0.77 7.50 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 34 H 0.05 1.12 7.81 -2.39 -0.02 1.10 16 35 H 0.10 1.11 8.13 -2.39 -0.02 1.09 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.04 7.90 -2.39 -0.02 1.02 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 2.52 7.63 -2.38 -0.02 2.50 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.06 335.66 2.93 -65.13 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.14 Total: 17.34 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.05 Total: -29.48 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.89 Total: -78.79 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.68 Total: 46.36 kcal Total: -68.06 2.93 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452560355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.235 kcal (2) G-P(sol) polarization free energy of solvation -68.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds