Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.52995 * 112.85050 * 180.02562 * 15 13 12 17 17 C 1.53780 * 113.61729 * 48.80039 * 16 15 13 18 18 C 1.53951 * 87.02346 * 220.05268 * 17 16 15 19 19 C 1.53781 * 87.11012 * 25.36172 * 18 17 16 20 20 C 1.53781 * 113.61269 * 48.80500 * 15 13 12 21 21 C 1.53963 * 87.01707 * 220.04849 * 20 15 13 22 22 C 1.53777 * 87.11168 * 25.36258 * 21 20 15 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 31 31 H 1.09000 * 112.85106 * 180.02562 * 16 15 13 32 32 H 1.09005 * 113.61436 * 334.57015 * 17 16 15 33 33 H 1.09001 * 113.61517 * 105.46976 * 17 16 15 34 34 H 1.09005 * 113.53537 * 270.80944 * 18 17 16 35 35 H 1.09001 * 113.74234 * 139.94697 * 18 17 16 36 36 H 1.09004 * 113.61384 * 220.08915 * 19 18 17 37 37 H 1.08999 * 113.68812 * 89.20541 * 19 18 17 38 38 H 1.08999 * 113.61762 * 334.56592 * 20 15 13 39 39 H 1.09002 * 113.61117 * 105.47550 * 20 15 13 40 40 H 1.09004 * 113.53445 * 270.81187 * 21 20 15 41 41 H 1.08999 * 113.74059 * 139.94814 * 21 20 15 42 42 H 1.08996 * 113.61597 * 220.08742 * 22 21 20 43 43 H 1.09000 * 113.61424 * 89.18559 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7904 -7.5929 -0.0010 15 6 2.9620 -8.5168 -0.0020 16 6 2.2764 -9.8845 -0.0027 17 6 1.1711 -10.0190 -1.0633 18 6 0.3571 -10.7819 -0.0024 19 6 1.1703 -10.0197 1.0571 20 6 4.0676 -8.3820 1.0584 21 6 5.0407 -8.9268 -0.0032 22 6 4.0678 -8.3819 -1.0622 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 3.3858 -5.9235 -0.0021 31 1 2.9847 -10.7131 -0.0023 32 1 0.7263 -9.0671 -1.3536 33 1 1.4583 -10.6313 -1.9182 34 1 0.5398 -11.8566 -0.0034 35 1 -0.7041 -10.5331 -0.0008 36 1 1.4570 -10.6326 1.9117 37 1 0.7263 -9.0679 1.3488 38 1 4.2708 -7.3513 1.3489 39 1 3.9362 -9.0458 1.9130 40 1 5.1215 -10.0138 -0.0027 41 1 6.0110 -8.4302 -0.0051 42 1 3.9364 -9.0454 -1.9169 43 1 4.2709 -7.3511 -1.3524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455429761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = -17.216701 kcal Electronic energy + Delta-G solvation = -20404.450972 eV Core-core repulsion = 17450.145293 eV Total energy + Delta-G solvation = -2954.305679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21033 -37.99021 -37.25802 -35.24416 -33.23471 -31.15552 -28.00799 -26.65088 -26.34769 -25.05038 -24.26740 -22.72716 -21.00183 -20.47363 -19.80269 -18.72870 -16.82607 -16.41810 -15.91342 -15.32237 -15.30337 -15.11316 -14.45459 -14.12806 -14.07033 -13.69006 -13.14221 -12.55937 -12.53956 -12.27455 -12.13271 -11.92088 -11.80577 -11.55786 -11.37338 -11.24178 -10.90464 -10.72944 -10.67184 -10.61463 -10.51806 -10.02471 -9.97148 -9.86849 -9.59109 -9.18326 -9.00918 -8.71260 -8.38183 -6.02791 -4.05979 2.74335 3.29993 3.36201 3.38289 3.42451 4.30323 4.31497 4.39579 4.43725 4.53058 4.80995 4.92025 4.96487 5.03288 5.16056 5.32998 5.35029 5.46809 5.46943 5.67145 5.68919 5.72565 5.74927 5.77586 5.78482 5.87986 5.94072 6.03119 6.13408 6.16055 6.21818 6.34832 6.49357 6.59057 6.71553 6.84895 7.00393 7.62327 7.74937 7.75677 7.95889 8.36598 8.46614 9.00676 9.58284 11.08500 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.003517 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.224263 B = 7960.292692 C = 8541.044979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.725 5.725 13 C 0.522 3.478 14 O -0.535 6.535 15 C -0.094 4.094 16 C -0.077 4.077 17 C -0.136 4.136 18 C -0.138 4.138 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.126 4.126 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.396 0.604 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -21.087 -0.005 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.376 5.376 13 C 0.308 3.692 14 O -0.413 6.413 15 C -0.097 4.097 16 C -0.095 4.095 17 C -0.173 4.173 18 C -0.175 4.175 19 C -0.173 4.173 20 C -0.164 4.164 21 C -0.175 4.175 22 C -0.164 4.164 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.627 -21.102 0.001 22.438 hybrid contribution 0.907 1.103 -0.010 1.428 sum 8.534 -19.999 -0.010 21.744 Atomic orbital electron populations 1.69970 1.06062 1.26690 1.50543 1.25032 0.94859 0.99306 0.95265 0.86582 0.79804 0.83428 0.78103 1.20651 1.21193 1.19886 1.21203 0.92979 0.90956 1.50960 0.92668 1.19026 0.93845 0.90865 0.97634 1.21883 0.99754 0.93445 1.00785 1.21627 0.91887 0.85142 1.01905 1.46233 1.10671 1.05982 1.74684 1.20289 0.89229 0.83745 0.75932 1.90597 1.17037 1.84356 1.49332 1.22014 0.93579 0.94783 0.99321 1.22132 0.95257 0.93305 0.98841 1.23109 0.96535 1.01969 0.95654 1.22685 0.99457 0.98088 0.97272 1.23079 0.96555 1.01974 0.95667 1.22992 0.94466 1.02206 0.96738 1.22864 0.97705 1.00992 0.95898 1.22959 0.94486 1.02206 0.96759 0.92921 0.96304 0.96286 0.92805 0.92798 0.91841 0.91836 0.77009 0.89114 0.87929 0.92764 0.91228 0.91598 0.92789 0.87920 0.89559 0.90619 0.89951 0.90968 0.90630 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 12 N -0.73 -10.28 5.15 -60.29 -0.31 -10.59 16 13 C 0.52 7.49 6.46 -10.98 -0.07 7.42 16 14 O -0.54 -9.37 11.56 5.56 0.06 -9.30 16 15 C -0.09 -1.00 0.79 -154.85 -0.12 -1.13 16 16 C -0.08 -0.81 3.14 -89.81 -0.28 -1.09 16 17 C -0.14 -1.58 7.25 -25.83 -0.19 -1.77 16 18 C -0.14 -1.53 8.09 -25.83 -0.21 -1.74 16 19 C -0.14 -1.58 7.24 -25.92 -0.19 -1.77 16 20 C -0.13 -1.12 7.10 -25.82 -0.18 -1.31 16 21 C -0.14 -1.01 7.77 -25.82 -0.20 -1.21 16 22 C -0.13 -1.12 7.09 -25.92 -0.18 -1.31 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.40 4.66 6.79 -40.82 -0.28 4.38 16 31 H 0.09 0.81 7.56 -51.93 -0.39 0.42 16 32 H 0.10 1.49 5.67 -51.93 -0.29 1.19 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 1.49 5.67 -51.93 -0.29 1.19 16 38 H 0.09 0.77 7.22 -51.93 -0.38 0.39 16 39 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.08 0.54 7.72 -51.93 -0.40 0.14 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.09 0.77 7.22 -51.93 -0.37 0.39 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -30.73 335.93 -9.25 -39.98 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.44 Total: 1.78 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.34 Total: -17.28 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.43 Total: -36.68 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.06 Total: -9.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.73 -9.25 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455429761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.767 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds