Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.52995 * 112.85050 * 180.02562 * 15 13 12 17 17 C 1.53780 * 113.61729 * 48.80039 * 16 15 13 18 18 C 1.53951 * 87.02346 * 220.05268 * 17 16 15 19 19 C 1.53781 * 87.11012 * 25.36172 * 18 17 16 20 20 C 1.53781 * 113.61269 * 48.80500 * 15 13 12 21 21 C 1.53963 * 87.01707 * 220.04849 * 20 15 13 22 22 C 1.53777 * 87.11168 * 25.36258 * 21 20 15 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 31 31 H 1.09000 * 112.85106 * 180.02562 * 16 15 13 32 32 H 1.09005 * 113.61436 * 334.57015 * 17 16 15 33 33 H 1.09001 * 113.61517 * 105.46976 * 17 16 15 34 34 H 1.09005 * 113.53537 * 270.80944 * 18 17 16 35 35 H 1.09001 * 113.74234 * 139.94697 * 18 17 16 36 36 H 1.09004 * 113.61384 * 220.08915 * 19 18 17 37 37 H 1.08999 * 113.68812 * 89.20541 * 19 18 17 38 38 H 1.08999 * 113.61762 * 334.56592 * 20 15 13 39 39 H 1.09002 * 113.61117 * 105.47550 * 20 15 13 40 40 H 1.09004 * 113.53445 * 270.81187 * 21 20 15 41 41 H 1.08999 * 113.74059 * 139.94814 * 21 20 15 42 42 H 1.08996 * 113.61597 * 220.08742 * 22 21 20 43 43 H 1.09000 * 113.61424 * 89.18559 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7904 -7.5929 -0.0010 15 6 2.9620 -8.5168 -0.0020 16 6 2.2764 -9.8845 -0.0027 17 6 1.1711 -10.0190 -1.0633 18 6 0.3571 -10.7819 -0.0024 19 6 1.1703 -10.0197 1.0571 20 6 4.0676 -8.3820 1.0584 21 6 5.0407 -8.9268 -0.0032 22 6 4.0678 -8.3819 -1.0622 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 3.3858 -5.9235 -0.0021 31 1 2.9847 -10.7131 -0.0023 32 1 0.7263 -9.0671 -1.3536 33 1 1.4583 -10.6313 -1.9182 34 1 0.5398 -11.8566 -0.0034 35 1 -0.7041 -10.5331 -0.0008 36 1 1.4570 -10.6326 1.9117 37 1 0.7263 -9.0679 1.3488 38 1 4.2708 -7.3513 1.3489 39 1 3.9362 -9.0458 1.9130 40 1 5.1215 -10.0138 -0.0027 41 1 6.0110 -8.4302 -0.0051 42 1 3.9364 -9.0454 -1.9169 43 1 4.2709 -7.3511 -1.3524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455429761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = -34.603736 kcal Electronic energy + Delta-G solvation = -20405.204930 eV Core-core repulsion = 17450.145293 eV Total energy + Delta-G solvation = -2955.059637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14927 -39.10714 -38.09640 -36.78458 -35.10363 -32.94069 -29.19144 -28.12856 -27.11661 -25.87304 -25.62578 -24.14494 -22.36106 -21.83360 -20.68618 -19.77292 -18.55826 -17.66811 -17.06962 -16.69735 -16.50773 -16.21053 -16.03986 -15.49520 -15.03067 -14.72342 -14.25994 -14.00508 -13.78291 -13.66506 -13.36465 -13.26938 -12.85537 -12.77721 -12.64383 -12.55022 -12.38544 -12.23175 -11.88037 -11.68338 -11.57458 -11.41421 -11.39725 -11.22313 -10.84563 -10.77281 -10.56869 -10.19577 -10.02256 -8.20745 -6.32617 1.41023 1.42531 1.53561 1.64011 2.23167 2.42162 3.12995 3.46731 3.54949 3.62192 3.89389 3.92946 4.01614 4.03681 4.18027 4.18145 4.27386 4.33811 4.52268 4.65664 4.79319 4.79612 4.87420 4.91773 4.94386 4.99684 5.01851 5.10710 5.11823 5.13644 5.16877 5.19117 5.22559 5.40498 5.48163 5.50864 5.55971 5.67995 5.81430 5.82325 6.20526 6.62520 6.84875 7.33154 7.37269 8.91445 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.003517 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.224263 B = 7960.292692 C = 8541.044979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.132 3.868 12 N -0.717 5.717 13 C 0.515 3.485 14 O -0.572 6.572 15 C -0.098 4.098 16 C -0.066 4.066 17 C -0.141 4.141 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.126 4.126 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.410 0.590 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.899 -22.235 -0.009 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.008 3.992 12 N -0.369 5.369 13 C 0.303 3.697 14 O -0.452 6.452 15 C -0.101 4.101 16 C -0.084 4.084 17 C -0.178 4.178 18 C -0.173 4.173 19 C -0.178 4.178 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.164 4.164 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.247 0.753 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.907 -22.267 -0.005 24.795 hybrid contribution -0.195 1.430 -0.010 1.443 sum 10.712 -20.837 -0.014 23.429 Atomic orbital electron populations 1.70120 1.07994 1.27818 1.51653 1.26043 0.95752 1.03621 0.94719 0.85399 0.78695 0.78169 0.78489 1.19777 1.21031 1.18335 1.21678 0.93753 0.91977 1.50538 0.91499 1.18940 0.94430 0.93063 0.94951 1.21587 0.98404 0.91878 1.02006 1.21170 0.91986 0.85726 1.00311 1.46028 1.10833 1.05241 1.74785 1.21125 0.89532 0.84384 0.74638 1.90600 1.19040 1.84868 1.50682 1.22139 0.93156 0.93016 1.01781 1.22176 0.95099 0.94048 0.97114 1.23021 0.97349 1.00665 0.96777 1.22729 0.98327 0.99421 0.96806 1.22991 0.97375 1.00669 0.96788 1.23046 0.93815 1.02598 0.96903 1.22831 0.97508 1.01938 0.93519 1.23012 0.93829 1.02600 0.96921 0.92802 0.99095 0.99075 0.91456 0.91432 0.93574 0.93568 0.75269 0.86132 0.91402 0.91067 0.88665 0.93381 0.91100 0.91393 0.89653 0.90042 0.88409 0.89548 0.90050 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.29 21.45 0.28 -57.26 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.26 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.13 4.79 5.67 86.38 0.49 5.28 16 12 N -0.72 -20.20 5.15 -463.05 -2.38 -22.58 16 13 C 0.51 14.89 6.46 87.66 0.57 15.46 16 14 O -0.57 -21.06 11.56 -3.02 -0.03 -21.10 16 15 C -0.10 -1.93 0.79 -52.40 -0.04 -1.97 16 16 C -0.07 -1.26 3.14 -10.27 -0.03 -1.29 16 17 C -0.14 -3.20 7.25 31.18 0.23 -2.97 16 18 C -0.14 -2.92 8.09 31.18 0.25 -2.67 16 19 C -0.14 -3.20 7.24 31.12 0.23 -2.98 16 20 C -0.13 -1.89 7.10 31.18 0.22 -1.67 16 21 C -0.12 -1.29 7.77 31.18 0.24 -1.05 16 22 C -0.13 -1.89 7.09 31.12 0.22 -1.66 16 23 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.41 9.06 6.79 -92.71 -0.63 8.43 16 31 H 0.12 1.64 7.56 -2.39 -0.02 1.62 16 32 H 0.07 2.05 5.67 -2.38 -0.01 2.03 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 2.05 5.67 -2.39 -0.01 2.04 16 38 H 0.08 1.30 7.22 -2.39 -0.02 1.28 16 39 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.10 0.80 7.72 -2.38 -0.02 0.78 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 43 H 0.08 1.30 7.22 -2.39 -0.02 1.28 16 Total: -1.00 -68.95 335.93 3.61 -65.33 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.35 Total: 17.54 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 3.38 Total: -27.82 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.10 Total: -79.84 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.03 Total: -21.10 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.95 3.61 -65.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455429761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.727 kcal (2) G-P(sol) polarization free energy of solvation -68.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds